Phosphorus in PDB 1akx: Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 29;

Binding sites:

The binding sites of Phosphorus atom in the Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure (pdb code 1akx). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 29 binding sites of Phosphorus where determined in the Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure, PDB code: 1akx:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Phosphorus binding site 1 out of 29 in the Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:P17 b:0.0 occ:1.00 P A:G17 0.0 0.0 1.0 OP1 A:G17 1.5 0.0 1.0 OP2 A:G17 1.5 0.0 1.0 O5' A:G17 1.6 0.0 1.0 O3' A:G16 1.6 0.0 1.0 C3' A:G16 2.6 0.0 1.0 C5' A:G17 2.6 0.0 1.0 H3' A:G16 2.7 0.0 1.0 H5'' A:G17 2.8 0.0 1.0 H5' A:G17 3.0 0.0 1.0 HO2' A:G16 3.2 0.0 1.0 H2' A:G16 3.3 0.0 1.0 C2' A:G16 3.3 0.0 1.0 O2' A:G16 3.6 0.0 1.0 C4' A:G17 3.9 0.0 1.0 H8 A:G17 3.9 0.0 1.0 C4' A:G16 3.9 0.0 1.0 H4' A:G16 4.1 0.0 1.0 O4' A:G17 4.2 0.0 1.0 H5' A:G16 4.2 0.0 1.0 H4' A:G17 4.3 0.0 1.0 C5' A:G16 4.6 0.0 1.0 C1' A:G16 4.7 0.0 1.0 H5'' A:G16 4.9 0.0 1.0 O4' A:G16 5.0 0.0 1.0 C8 A:G17 5.0 0.0 1.0

Phosphorus binding site 2 out of 29 in the Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:P18 b:0.0 occ:1.00 P A:C18 0.0 0.0 1.0 OP2 A:C18 1.5 0.0 1.0 OP1 A:C18 1.5 0.0 1.0 O5' A:C18 1.6 0.0 1.0 O3' A:G17 1.6 0.0 1.0 C3' A:G17 2.6 0.0 1.0 C5' A:C18 2.6 0.0 1.0 H3' A:G17 2.7 0.0 1.0 H5'' A:C18 2.9 0.0 1.0 H5' A:C18 2.9 0.0 1.0 H2' A:G17 3.4 0.0 1.0 H6 A:C18 3.4 0.0 1.0 C2' A:G17 3.4 0.0 1.0 O2' A:G17 3.9 0.0 1.0 C4' A:G17 3.9 0.0 1.0 H3' A:C18 3.9 0.0 1.0 C4' A:C18 3.9 0.0 1.0 HO2' A:G17 4.0 0.0 1.0 H4' A:G17 4.1 0.0 1.0 H5' A:G17 4.2 0.0 1.0 O4' A:C18 4.3 0.0 1.0 C3' A:C18 4.5 0.0 1.0 C6 A:C18 4.5 0.0 1.0 C5' A:G17 4.5 0.0 1.0 H5'' A:G17 4.6 0.0 1.0 H4' A:C18 4.7 0.0 1.0 C1' A:G17 4.8 0.0 1.0 H5 A:C18 4.8 0.0 1.0 O4' A:G17 5.0 0.0 1.0

Phosphorus binding site 3 out of 29 in the Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:P19 b:0.0 occ:1.00 P A:C19 0.0 0.0 1.0 OP1 A:C19 1.5 0.0 1.0 OP2 A:C19 1.5 0.0 1.0 O5' A:C19 1.6 0.0 1.0 O3' A:C18 1.6 0.0 1.0 C3' A:C18 2.6 0.0 1.0 C5' A:C19 2.6 0.0 1.0 H3' A:C18 2.8 0.0 1.0 H5'' A:C19 2.9 0.0 1.0 H5' A:C19 2.9 0.0 1.0 H2' A:C18 3.2 0.0 1.0 C2' A:C18 3.3 0.0 1.0 O2' A:C18 3.5 0.0 1.0 HO2' A:C18 3.5 0.0 1.0 C4' A:C19 3.9 0.0 1.0 C4' A:C18 3.9 0.0 1.0 H4' A:C18 4.1 0.0 1.0 H4' A:C19 4.1 0.0 1.0 H5'' A:C18 4.3 0.0 1.0 H6 A:C19 4.4 0.0 1.0 O4' A:C19 4.4 0.0 1.0 C5' A:C18 4.7 0.0 1.0 C1' A:C18 4.7 0.0 1.0 O4' A:C18 5.0 0.0 1.0

Phosphorus binding site 4 out of 29 in the Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:P20 b:0.0 occ:1.00 P A:A20 0.0 0.0 1.0 OP2 A:A20 1.5 0.0 1.0 OP1 A:A20 1.5 0.0 1.0 O5' A:A20 1.6 0.0 1.0 O3' A:C19 1.6 0.0 1.0 C5' A:A20 2.6 0.0 1.0 C3' A:C19 2.6 0.0 1.0 H3' A:C19 2.6 0.0 1.0 H5' A:A20 2.9 0.0 1.0 H5'' A:A20 2.9 0.0 1.0 H2' A:C19 3.4 0.0 1.0 C2' A:C19 3.5 0.0 1.0 H8 A:A20 3.5 0.0 1.0 C4' A:C19 3.9 0.0 1.0 O2' A:C19 3.9 0.0 1.0 C4' A:A20 3.9 0.0 1.0 H3' A:A20 4.0 0.0 1.0 H5' A:C19 4.0 0.0 1.0 H4' A:C19 4.1 0.0 1.0 HO2' A:C19 4.2 0.0 1.0 O4' A:A20 4.3 0.0 1.0 C5' A:C19 4.5 0.0 1.0 C8 A:A20 4.5 0.0 1.0 C3' A:A20 4.5 0.0 1.0 H4' A:A20 4.7 0.0 1.0 C1' A:C19 4.8 0.0 1.0 H5'' A:C19 4.8 0.0 1.0 O4' A:C19 5.0 0.0 1.0

Phosphorus binding site 5 out of 29 in the Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:P21 b:0.0 occ:1.00 P A:G21 0.0 0.0 1.0 OP2 A:G21 1.5 0.0 1.0 OP1 A:G21 1.5 0.0 1.0 O5' A:G21 1.6 0.0 1.0 O3' A:A20 1.6 0.0 1.0 C3' A:A20 2.6 0.0 1.0 C5' A:G21 2.6 0.0 1.0 H3' A:A20 2.7 0.0 1.0 H5' A:G21 2.8 0.0 1.0 H5'' A:G21 3.0 0.0 1.0 H8 A:G21 3.3 0.0 1.0 H2' A:A20 3.3 0.0 1.0 C2' A:A20 3.4 0.0 1.0 O2' A:A20 3.8 0.0 1.0 C4' A:G21 3.9 0.0 1.0 C4' A:A20 3.9 0.0 1.0 HO2' A:A20 3.9 0.0 1.0 H4' A:A20 4.1 0.0 1.0 O4' A:G21 4.2 0.0 1.0 H5'' A:A20 4.2 0.0 1.0 H3' A:G21 4.2 0.0 1.0 C8 A:G21 4.4 0.0 1.0 C5' A:A20 4.5 0.0 1.0 C3' A:G21 4.7 0.0 1.0 H4' A:G21 4.7 0.0 1.0 C1' A:A20 4.7 0.0 1.0 O5' A:A20 4.9 0.0 1.0 O4' A:A20 5.0 0.0 1.0

Phosphorus binding site 6 out of 29 in the Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:P22 b:0.0 occ:1.00 P A:A22 0.0 0.0 1.0 OP1 A:A22 1.5 0.0 1.0 OP2 A:A22 1.5 0.0 1.0 O5' A:A22 1.6 0.0 1.0 O3' A:G21 1.6 0.0 1.0 C3' A:G21 2.6 0.0 1.0 C5' A:A22 2.6 0.0 1.0 H5'' A:A22 2.7 0.0 1.0 HO2' A:G21 2.7 0.0 1.0 H3' A:G21 2.9 0.0 1.0 H2' A:G21 3.1 0.0 1.0 C2' A:G21 3.2 0.0 1.0 H5' A:A22 3.2 0.0 1.0 O2' A:G21 3.4 0.0 1.0 H8 A:A22 3.6 0.0 1.0 O4' A:A22 3.8 0.0 1.0 C4' A:A22 3.8 0.0 1.0 C4' A:G21 4.0 0.0 1.0 H4' A:G21 4.0 0.0 1.0 H5'' A:G21 4.3 0.0 1.0 H4' A:A22 4.4 0.0 1.0 C1' A:G21 4.6 0.0 1.0 C8 A:A22 4.6 0.0 1.0 C5' A:G21 4.7 0.0 1.0 H3' A:A22 4.8 0.0 1.0 O4' A:G21 4.9 0.0 1.0 C3' A:A22 4.9 0.0 1.0

Phosphorus binding site 7 out of 29 in the Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 7 of Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:P23 b:0.0 occ:1.00 P A:U23 0.0 0.0 1.0 OP1 A:U23 1.5 0.0 1.0 OP2 A:U23 1.5 0.0 1.0 O5' A:U23 1.6 0.0 1.0 O3' A:A22 1.6 0.0 1.0 C5' A:U23 2.6 0.0 1.0 C3' A:A22 2.6 0.0 1.0 H5'' A:U23 2.7 0.0 1.0 H3' A:A22 2.8 0.0 1.0 H5' A:A22 2.8 0.0 1.0 H4' A:U23 3.2 0.0 1.0 C4' A:A22 3.2 0.0 1.0 H4' A:A22 3.2 0.0 1.0 C5' A:A22 3.3 0.0 1.0 H5'' A:A22 3.4 0.0 1.0 H5' A:U23 3.5 0.0 1.0 C4' A:U23 3.5 0.0 1.0 HO2' A:A22 3.8 0.0 1.0 C2' A:A22 4.0 0.0 1.0 HH21 A:ARG47 4.0 0.0 1.0 O4' A:U23 4.2 0.0 1.0 O2' A:A22 4.3 0.0 1.0 H5' A:U25 4.3 0.0 1.0 H2' A:A22 4.4 0.0 1.0 O4' A:A22 4.6 0.0 1.0 HH22 A:ARG47 4.6 0.0 1.0 NH2 A:ARG47 4.7 0.0 1.0 O5' A:A22 4.7 0.0 1.0 H2' A:U25 4.8 0.0 1.0 C3' A:U23 4.8 0.0 1.0 O5' A:U25 4.8 0.0 1.0 H3' A:U23 4.9 0.0 1.0 H6 A:U23 4.9 0.0 1.0 C1' A:A22 5.0 0.0 1.0

Phosphorus binding site 8 out of 29 in the Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 8 of Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:P25 b:0.0 occ:1.00 P A:U25 0.0 0.0 1.0 OP2 A:U25 1.5 0.0 1.0 OP1 A:U25 1.5 0.0 1.0 O5' A:U25 1.6 0.0 1.0 O3' A:U23 1.6 0.0 1.0 C5' A:U25 2.6 0.0 1.0 C3' A:U23 2.6 0.0 1.0 H5'' A:U25 2.7 0.0 1.0 H3' A:U23 2.7 0.0 1.0 H4' A:U23 2.9 0.0 1.0 H5' A:G26 2.9 0.0 1.0 H5' A:U25 3.3 0.0 1.0 C4' A:U23 3.3 0.0 1.0 C5' A:G26 3.7 0.0 1.0 H4' A:U25 3.7 0.0 1.0 H5'' A:G26 3.7 0.0 1.0 C4' A:U25 3.7 0.0 1.0 O5' A:G26 3.9 0.0 1.0 C2' A:U23 4.0 0.0 1.0 H3' A:U25 4.0 0.0 1.0 O2' A:U23 4.2 0.0 1.0 O4' A:U23 4.4 0.0 1.0 C5' A:U23 4.4 0.0 1.0 C3' A:U25 4.4 0.0 1.0 H1' A:U23 4.4 0.0 1.0 O5' A:U23 4.5 0.0 1.0 C1' A:U23 4.5 0.0 1.0 H5' A:U23 4.5 0.0 1.0 H2' A:U23 4.7 0.0 1.0 O4' A:U25 4.9 0.0 1.0

Phosphorus binding site 9 out of 29 in the Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 9 of Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:P26 b:0.0 occ:1.00 P A:G26 0.0 0.0 1.0 OP2 A:G26 1.5 0.0 1.0 OP1 A:G26 1.5 0.0 1.0 O5' A:G26 1.6 0.0 1.0 O3' A:U25 1.6 0.0 1.0 H3' A:U25 2.6 0.0 1.0 C3' A:U25 2.6 0.0 1.0 C5' A:G26 2.6 0.0 1.0 H5'' A:G26 2.8 0.0 1.0 O4' A:G26 3.0 0.0 1.0 C4' A:G26 3.3 0.0 1.0 H4' A:U25 3.3 0.0 1.0 HO2' A:C41 3.4 0.0 1.0 H5' A:G26 3.5 0.0 1.0 H8 A:G26 3.6 0.0 1.0 C4' A:U25 3.6 0.0 1.0 H4' A:G26 3.6 0.0 1.0 O2' A:C41 3.6 0.0 1.0 H5' A:U42 3.7 0.0 1.0 H4' A:U42 3.8 0.0 1.0 C2' A:U25 3.8 0.0 1.0 O2' A:U25 3.9 0.0 1.0 O5' A:U25 4.1 0.0 1.0 HO2' A:U25 4.2 0.0 1.0 O4' A:U42 4.2 0.0 1.0 O2' A:A22 4.3 0.0 1.0 C4' A:U42 4.3 0.0 1.0 C1' A:G26 4.3 0.0 1.0 H1' A:U25 4.3 0.0 1.0 C8 A:G26 4.4 0.0 1.0 C5' A:U25 4.5 0.0 1.0 C5' A:U42 4.5 0.0 1.0 C1' A:U25 4.5 0.0 1.0 H2' A:U25 4.6 0.0 1.0 O4' A:U25 4.6 0.0 1.0 C3' A:G26 4.7 0.0 1.0 HO2' A:A22 4.7 0.0 1.0 N9 A:G26 4.7 0.0 1.0 H1' A:G26 4.7 0.0 1.0 HO2' A:U42 4.9 0.0 1.0 H3' A:G26 4.9 0.0 1.0 C2' A:C41 4.9 0.0 1.0 OP2 A:U25 5.0 0.0 1.0

Phosphorus binding site 10 out of 29 in the Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 10 of Hiv-2 Trans Activating Region Rna Complex with Argininamide, uc(Nmr), Minimized Average Structure within 5.0Å range: probe atom residue distance (Å) B Occ A:P27 b:0.0 occ:1.00 P A:A27 0.0 0.0 1.0 OP2 A:A27 1.5 0.0 1.0 OP1 A:A27 1.5 0.0 1.0 O5' A:A27 1.6 0.0 1.0 O3' A:G26 1.6 0.0 1.0 C3' A:G26 2.6 0.0 1.0 C5' A:A27 2.6 0.0 1.0 H3' A:G26 2.7 0.0 1.0 H5'' A:A27 2.9 0.0 1.0 H5' A:A27 2.9 0.0 1.0 H2' A:G26 3.2 0.0 1.0 C2' A:G26 3.3 0.0 1.0 HO2' A:G26 3.6 0.0 1.0 O2' A:G26 3.6 0.0 1.0 O2 A:U23 3.9 0.0 1.0 C4' A:A27 3.9 0.0 1.0 C4' A:G26 3.9 0.0 1.0 O2' A:U23 4.0 0.0 1.0 H4' A:G26 4.1 0.0 1.0 H4' A:A27 4.1 0.0 1.0 HO2' A:U23 4.2 0.0 1.0 H5' A:G26 4.3 0.0 1.0 O4' A:A27 4.4 0.0 1.0 H8 A:A27 4.4 0.0 1.0 H1' A:U23 4.6 0.0 1.0 C5' A:G26 4.6 0.0 1.0 C1' A:G26 4.7 0.0 1.0 H5'' A:G26 5.0 0.0 1.0 O4' A:G26 5.0 0.0 1.0

A.S.Brodsky, J.R.Williamson. Solution Structure of the Hiv-2 Tar-Argininamide Complex. J.Mol.Biol. V. 267 624 1997.
ISSN: ISSN 0022-2836
PubMed: 9126842
DOI: 10.1006/JMBI.1996.0879