Phosphorus in PDB 1aju: Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures

Phosphorus Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 29;

Binding sites:

The binding sites of Phosphorus atom in the Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures (pdb code 1aju). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 29 binding sites of Phosphorus where determined in the Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures, PDB code: 1aju:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Phosphorus binding site 1 out of 29 in 1aju

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Phosphorus binding site 1 out of 29 in the Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P17

b:0.0
occ:1.00
P A:G17 0.0 0.0 1.0
OP1 A:G17 1.5 0.0 1.0
OP2 A:G17 1.5 0.0 1.0
O5' A:G17 1.6 0.0 1.0
O3' A:G16 1.6 0.0 1.0
C3' A:G16 2.6 0.0 1.0
C5' A:G17 2.6 0.0 1.0
H3' A:G16 2.7 0.0 1.0
H5'' A:G17 2.8 0.0 1.0
H5' A:G17 3.0 0.0 1.0
HO2' A:G16 3.1 0.0 1.0
H2' A:G16 3.3 0.0 1.0
C2' A:G16 3.3 0.0 1.0
O2' A:G16 3.6 0.0 1.0
C4' A:G17 3.9 0.0 1.0
C4' A:G16 3.9 0.0 1.0
H4' A:G16 4.1 0.0 1.0
H8 A:G17 4.2 0.0 1.0
H4' A:G17 4.2 0.0 1.0
O4' A:G17 4.3 0.0 1.0
H5' A:G16 4.3 0.0 1.0
C5' A:G16 4.6 0.0 1.0
C1' A:G16 4.7 0.0 1.0
H5'' A:G16 4.8 0.0 1.0
O4' A:G16 5.0 0.0 1.0

Phosphorus binding site 2 out of 29 in 1aju

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Phosphorus binding site 2 out of 29 in the Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P18

b:0.0
occ:1.00
P A:C18 0.0 0.0 1.0
OP2 A:C18 1.5 0.0 1.0
OP1 A:C18 1.5 0.0 1.0
O5' A:C18 1.6 0.0 1.0
O3' A:G17 1.6 0.0 1.0
C5' A:C18 2.6 0.0 1.0
C3' A:G17 2.7 0.0 1.0
HO2' A:G17 2.7 0.0 1.0
H5'' A:C18 2.8 0.0 1.0
O2' A:G17 2.8 0.0 1.0
H4' A:G17 2.8 0.0 1.0
H5' A:C18 3.0 0.0 1.0
C2' A:G17 3.2 0.0 1.0
C4' A:G17 3.3 0.0 1.0
H3' A:G17 3.6 0.0 1.0
H2' A:G17 3.7 0.0 1.0
C4' A:C18 3.9 0.0 1.0
H5' A:G17 4.0 0.0 1.0
H4' A:C18 4.1 0.0 1.0
O4' A:C18 4.3 0.0 1.0
C5' A:G17 4.3 0.0 1.0
O4' A:G17 4.4 0.0 1.0
C1' A:G17 4.4 0.0 1.0
H6 A:C18 4.5 0.0 1.0
H1' A:G17 5.0 0.0 1.0

Phosphorus binding site 3 out of 29 in 1aju

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Phosphorus binding site 3 out of 29 in the Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P19

b:0.0
occ:1.00
P A:C19 0.0 0.0 1.0
OP1 A:C19 1.5 0.0 1.0
OP2 A:C19 1.5 0.0 1.0
O5' A:C19 1.6 0.0 1.0
O3' A:C18 1.6 0.0 1.0
C3' A:C18 2.6 0.0 1.0
C5' A:C19 2.6 0.0 1.0
H3' A:C18 2.8 0.0 1.0
H5'' A:C19 2.8 0.0 1.0
H5' A:C19 3.0 0.0 1.0
H2' A:C18 3.2 0.0 1.0
C2' A:C18 3.3 0.0 1.0
H6 A:C19 3.5 0.0 1.0
O2' A:C18 3.5 0.0 1.0
C4' A:C19 3.9 0.0 1.0
HO2' A:C18 3.9 0.0 1.0
C4' A:C18 3.9 0.0 1.0
H4' A:C18 4.1 0.0 1.0
O4' A:C19 4.1 0.0 1.0
H5' A:C18 4.2 0.0 1.0
H4' A:C19 4.3 0.0 1.0
C6 A:C19 4.6 0.0 1.0
C5' A:C18 4.7 0.0 1.0
C1' A:C18 4.7 0.0 1.0
O4' A:C18 5.0 0.0 1.0

Phosphorus binding site 4 out of 29 in 1aju

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Phosphorus binding site 4 out of 29 in the Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P20

b:0.0
occ:1.00
P A:A20 0.0 0.0 1.0
OP2 A:A20 1.5 0.0 1.0
OP1 A:A20 1.5 0.0 1.0
O5' A:A20 1.6 0.0 1.0
O3' A:C19 1.6 0.0 1.0
C3' A:C19 2.6 0.0 1.0
H3' A:C19 2.6 0.0 1.0
C5' A:A20 2.6 0.0 1.0
H5'' A:A20 2.8 0.0 1.0
H5' A:A20 3.0 0.0 1.0
H2' A:C19 3.4 0.0 1.0
C2' A:C19 3.5 0.0 1.0
H3' A:A20 3.6 0.0 1.0
H8 A:A20 3.7 0.0 1.0
C4' A:C19 3.9 0.0 1.0
C4' A:A20 3.9 0.0 1.0
O2' A:C19 3.9 0.0 1.0
H4' A:C19 4.0 0.0 1.0
C3' A:A20 4.2 0.0 1.0
H5' A:C19 4.2 0.0 1.0
HO2' A:C19 4.4 0.0 1.0
H5'' A:C19 4.4 0.0 1.0
C5' A:C19 4.5 0.0 1.0
OP2 A:G21 4.5 0.0 1.0
O4' A:A20 4.6 0.0 1.0
C8 A:A20 4.6 0.0 1.0
H4' A:A20 4.7 0.0 1.0
O3' A:A20 4.8 0.0 1.0
C1' A:C19 4.8 0.0 1.0
O4' A:C19 5.0 0.0 1.0

Phosphorus binding site 5 out of 29 in 1aju

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Phosphorus binding site 5 out of 29 in the Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P21

b:0.0
occ:1.00
P A:G21 0.0 0.0 1.0
OP1 A:G21 1.5 0.0 1.0
OP2 A:G21 1.5 0.0 1.0
O5' A:G21 1.6 0.0 1.0
O3' A:A20 1.6 0.0 1.0
C5' A:G21 2.6 0.0 1.0
C3' A:A20 2.6 0.0 1.0
H3' A:A20 2.7 0.0 1.0
H5' A:G21 2.8 0.0 1.0
H5'' A:G21 3.0 0.0 1.0
H8 A:G21 3.3 0.0 1.0
H2' A:A20 3.4 0.0 1.0
C2' A:A20 3.4 0.0 1.0
O2' A:A20 3.8 0.0 1.0
C4' A:G21 3.9 0.0 1.0
C4' A:A20 3.9 0.0 1.0
H4' A:A20 4.1 0.0 1.0
O4' A:G21 4.1 0.0 1.0
H3' A:G21 4.2 0.0 1.0
H5'' A:A20 4.3 0.0 1.0
C8 A:G21 4.3 0.0 1.0
HO2' A:A20 4.4 0.0 1.0
C5' A:A20 4.5 0.0 1.0
O5' A:A20 4.5 0.0 1.0
C3' A:G21 4.7 0.0 1.0
H4' A:G21 4.7 0.0 1.0
C1' A:A20 4.8 0.0 1.0
O4' A:A20 5.0 0.0 1.0

Phosphorus binding site 6 out of 29 in 1aju

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Phosphorus binding site 6 out of 29 in the Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P22

b:0.0
occ:1.00
P A:A22 0.0 0.0 1.0
OP2 A:A22 1.5 0.0 1.0
OP1 A:A22 1.5 0.0 1.0
O5' A:A22 1.6 0.0 1.0
O3' A:G21 1.6 0.0 1.0
C3' A:G21 2.6 0.0 1.0
C5' A:A22 2.6 0.0 1.0
H3' A:G21 2.7 0.0 1.0
H5' A:A22 2.8 0.0 1.0
H5'' A:A22 2.9 0.0 1.0
H2' A:G21 3.3 0.0 1.0
H8 A:A22 3.4 0.0 1.0
C2' A:G21 3.4 0.0 1.0
O2' A:G21 3.8 0.0 1.0
C4' A:A22 3.9 0.0 1.0
C4' A:G21 3.9 0.0 1.0
H5'' A:G21 4.1 0.0 1.0
H4' A:G21 4.1 0.0 1.0
H3' A:A22 4.1 0.0 1.0
O4' A:A22 4.2 0.0 1.0
HO2' A:G21 4.3 0.0 1.0
C8 A:A22 4.4 0.0 1.0
C5' A:G21 4.5 0.0 1.0
C3' A:A22 4.6 0.0 1.0
HE A:ARG47 4.7 0.0 1.0
H4' A:A22 4.7 0.0 1.0
C1' A:G21 4.7 0.0 1.0
O4' A:G21 5.0 0.0 1.0

Phosphorus binding site 7 out of 29 in 1aju

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Phosphorus binding site 7 out of 29 in the Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 7 of Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P23

b:0.0
occ:1.00
P A:U23 0.0 0.0 1.0
OP1 A:U23 1.5 0.0 1.0
OP2 A:U23 1.5 0.0 1.0
O5' A:U23 1.6 0.0 1.0
O3' A:A22 1.6 0.0 1.0
C5' A:U23 2.6 0.0 1.0
C3' A:A22 2.7 0.0 1.0
O2' A:A22 2.8 0.0 1.0
H4' A:A22 2.8 0.0 1.0
H5'' A:U23 2.9 0.0 1.0
H5' A:U23 2.9 0.0 1.0
HO2' A:A22 3.0 0.0 1.0
C2' A:A22 3.2 0.0 1.0
C4' A:A22 3.3 0.0 1.0
H3' A:A22 3.6 0.0 1.0
H2' A:A22 3.7 0.0 1.0
H6 A:U25 3.8 0.0 1.0
H5'' A:A22 3.9 0.0 1.0
C4' A:U23 3.9 0.0 1.0
H4' A:U23 4.0 0.0 1.0
H5 A:U25 4.1 0.0 1.0
HH22 A:ARG47 4.1 0.0 1.0
H2' A:U25 4.2 0.0 1.0
C5' A:A22 4.2 0.0 1.0
C6 A:U25 4.3 0.0 1.0
H3' A:U23 4.4 0.0 1.0
C5 A:U25 4.4 0.0 1.0
O4' A:A22 4.4 0.0 1.0
C1' A:A22 4.4 0.0 1.0
H5' A:U25 4.6 0.0 1.0
O5' A:U25 4.7 0.0 1.0
NH2 A:ARG47 4.7 0.0 1.0
C3' A:U23 4.8 0.0 1.0
H5' A:A22 4.8 0.0 1.0
H1' A:A22 4.9 0.0 1.0
HH21 A:ARG47 4.9 0.0 1.0
O4' A:U23 5.0 0.0 1.0

Phosphorus binding site 8 out of 29 in 1aju

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Phosphorus binding site 8 out of 29 in the Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 8 of Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P25

b:0.0
occ:1.00
P A:U25 0.0 0.0 1.0
OP2 A:U25 1.5 0.0 1.0
OP1 A:U25 1.5 0.0 1.0
O5' A:U25 1.6 0.0 1.0
O3' A:U23 1.6 0.0 1.0
H3' A:U23 2.6 0.0 1.0
C3' A:U23 2.6 0.0 1.0
C5' A:U25 2.6 0.0 1.0
H5'' A:U25 2.7 0.0 1.0
H3' A:U25 2.8 0.0 1.0
H4' A:U23 3.1 0.0 1.0
H5' A:G26 3.3 0.0 1.0
H5'' A:G26 3.4 0.0 1.0
H5' A:U25 3.4 0.0 1.0
C4' A:U23 3.5 0.0 1.0
C4' A:U25 3.6 0.0 1.0
C3' A:U25 3.6 0.0 1.0
HO2' A:U23 3.7 0.0 1.0
C5' A:G26 3.8 0.0 1.0
C2' A:U23 3.9 0.0 1.0
H4' A:U25 3.9 0.0 1.0
O2' A:U23 4.0 0.0 1.0
O5' A:G26 4.2 0.0 1.0
H2' A:U25 4.3 0.0 1.0
O5' A:U23 4.4 0.0 1.0
C5' A:U23 4.5 0.0 1.0
O4' A:U23 4.5 0.0 1.0
O3' A:U25 4.5 0.0 1.0
H1' A:U23 4.5 0.0 1.0
C1' A:U23 4.6 0.0 1.0
C2' A:U25 4.6 0.0 1.0
H2' A:U23 4.6 0.0 1.0
H5' A:U23 4.7 0.0 1.0
O4' A:U25 4.8 0.0 1.0
H3' A:G26 5.0 0.0 1.0
H8 A:G26 5.0 0.0 1.0
P A:G26 5.0 0.0 1.0

Phosphorus binding site 9 out of 29 in 1aju

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Phosphorus binding site 9 out of 29 in the Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 9 of Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P26

b:0.0
occ:1.00
P A:G26 0.0 0.0 1.0
OP1 A:G26 1.5 0.0 1.0
OP2 A:G26 1.5 0.0 1.0
O5' A:G26 1.6 0.0 1.0
O3' A:U25 1.6 0.0 1.0
C3' A:U25 2.6 0.0 1.0
H3' A:U25 2.6 0.0 1.0
C5' A:G26 2.6 0.0 1.0
H5'' A:G26 2.8 0.0 1.0
O2' A:C41 3.1 0.0 1.0
O4' A:G26 3.1 0.0 1.0
O2' A:U25 3.2 0.0 1.0
HO2' A:C41 3.3 0.0 1.0
C4' A:G26 3.3 0.0 1.0
C2' A:U25 3.5 0.0 1.0
H5' A:G26 3.5 0.0 1.0
H4' A:G26 3.6 0.0 1.0
H8 A:G26 3.7 0.0 1.0
H4' A:U25 3.8 0.0 1.0
C4' A:U25 3.9 0.0 1.0
H4' A:C41 4.1 0.0 1.0
HO2' A:U25 4.2 0.0 1.0
H1' A:U25 4.2 0.0 1.0
OP2 A:U25 4.2 0.0 1.0
H2' A:U25 4.2 0.0 1.0
C1' A:U25 4.4 0.0 1.0
C2' A:C41 4.4 0.0 1.0
H1' A:C41 4.5 0.0 1.0
C1' A:G26 4.5 0.0 1.0
C8 A:G26 4.5 0.0 1.0
O3' A:C41 4.6 0.0 1.0
O4' A:U25 4.8 0.0 1.0
C3' A:G26 4.8 0.0 1.0
O5' A:U25 4.8 0.0 1.0
H4' A:U23 4.8 0.0 1.0
C4' A:C41 4.9 0.0 1.0
N9 A:G26 4.9 0.0 1.0
H1' A:G26 4.9 0.0 1.0
C1' A:C41 4.9 0.0 1.0
C5' A:U25 4.9 0.0 1.0
C3' A:C41 4.9 0.0 1.0
O5' A:U42 5.0 0.0 1.0
P A:U25 5.0 0.0 1.0
H3' A:G26 5.0 0.0 1.0

Phosphorus binding site 10 out of 29 in 1aju

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Phosphorus binding site 10 out of 29 in the Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 10 of Hiv-2 Tar-Argininamide Complex, uc(Nmr), 20 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P27

b:0.0
occ:1.00
P A:A27 0.0 0.0 1.0
OP1 A:A27 1.5 0.0 1.0
OP2 A:A27 1.5 0.0 1.0
O5' A:A27 1.6 0.0 1.0
O3' A:G26 1.6 0.0 1.0
C5' A:A27 2.6 0.0 1.0
C3' A:G26 2.6 0.0 1.0
H3' A:G26 2.8 0.0 1.0
H5' A:A27 2.9 0.0 1.0
H5'' A:A27 2.9 0.0 1.0
H2' A:G26 3.2 0.0 1.0
C2' A:G26 3.2 0.0 1.0
O2' A:G26 3.5 0.0 1.0
O2 A:U23 3.8 0.0 1.0
C4' A:A27 3.9 0.0 1.0
C4' A:G26 4.0 0.0 1.0
HO2' A:G26 4.0 0.0 1.0
H4' A:G26 4.0 0.0 1.0
H4' A:A27 4.1 0.0 1.0
H5' A:G26 4.3 0.0 1.0
O4' A:A27 4.4 0.0 1.0
H1' A:U23 4.5 0.0 1.0
H8 A:A27 4.5 0.0 1.0
O2' A:U23 4.6 0.0 1.0
C1' A:G26 4.7 0.0 1.0
C5' A:G26 4.7 0.0 1.0
O4' A:G26 5.0 0.0 1.0

Reference:

A.S.Brodsky, J.R.Williamson. Solution Structure of the Hiv-2 Tar-Argininamide Complex. J.Mol.Biol. V. 267 624 1997.
ISSN: ISSN 0022-2836
PubMed: 9126842
DOI: 10.1006/JMBI.1996.0879
Page generated: Fri Sep 25 13:03:42 2020

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