Phosphorus in PDB 1aj8: Citrate Synthase From Pyrococcus Furiosus

Enzymatic activity of Citrate Synthase From Pyrococcus Furiosus

All present enzymatic activity of Citrate Synthase From Pyrococcus Furiosus:
4.1.3.7;

Protein crystallography data

The structure of Citrate Synthase From Pyrococcus Furiosus, PDB code: 1aj8 was solved by R.J.M.Russell, J.M.C.Ferguson, D.W.Hough, M.J.Danson, G.L.Taylor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 100.00 / 1.90
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 98.290, 98.290, 238.030, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 23.2

Phosphorus Binding Sites:

The binding sites of Phosphorus atom in the Citrate Synthase From Pyrococcus Furiosus (pdb code 1aj8). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 6 binding sites of Phosphorus where determined in the Citrate Synthase From Pyrococcus Furiosus, PDB code: 1aj8:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6;

Phosphorus binding site 1 out of 6 in 1aj8

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Phosphorus binding site 1 out of 6 in the Citrate Synthase From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Citrate Synthase From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P3000

b:38.2
occ:1.00
 P3B A:COA3000 0.0 38.2 1.0
O9A A:COA3000 1.6 40.7 1.0
O8A A:COA3000 1.6 44.5 1.0
O7A A:COA3000 1.6 45.6 1.0
O3B A:COA3000 1.7 38.8 1.0
C3B A:COA3000 2.7 31.6 1.0
C4B A:COA3000 3.5 31.3 1.0
NZ A:LYS305 3.5 24.6 1.0
C2B A:COA3000 3.9 30.7 1.0
O2B A:COA3000 4.2 36.5 1.0
CE A:LYS305 4.2 23.4 1.0
O4B A:COA3000 4.4 25.0 1.0
C5B A:COA3000 4.6 34.5 1.0
C1B A:COA3000 4.6 25.9 1.0
NZ A:LYS254 4.6 59.5 1.0

Phosphorus binding site 2 out of 6 in 1aj8

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Phosphorus binding site 2 out of 6 in the Citrate Synthase From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Citrate Synthase From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P3000

b:41.8
occ:1.00
 P1A A:COA3000 0.0 41.8 1.0
O1A A:COA3000 1.6 43.5 1.0
O2A A:COA3000 1.6 34.9 1.0
O3A A:COA3000 1.6 29.5 1.0
O5B A:COA3000 1.7 39.0 1.0
C5B A:COA3000 2.7 34.5 1.0
P2A A:COA3000 2.9 18.8 1.0
O5A A:COA3000 3.1 24.6 1.0
O A:HOH3132 3.4 35.3 1.0
O6A A:COA3000 3.7 22.2 1.0
C4B A:COA3000 3.8 31.3 1.0
O4A A:COA3000 4.0 21.5 1.0
C3B A:COA3000 4.0 31.6 1.0
C2B A:COA3000 4.1 30.7 1.0
C8A A:COA3000 4.2 20.4 1.0
NE B:ARG353 4.3 23.5 1.0
NH2 B:ARG353 4.3 25.9 1.0
O4B A:COA3000 4.3 25.0 1.0
O B:HOH4024 4.6 15.3 1.0
C1B A:COA3000 4.6 25.9 1.0
N9A A:COA3000 4.7 23.1 1.0
CZ B:ARG353 4.8 25.9 1.0
CCP A:COA3000 4.9 16.2 1.0
O B:HOH4093 4.9 47.3 1.0

Phosphorus binding site 3 out of 6 in 1aj8

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Phosphorus binding site 3 out of 6 in the Citrate Synthase From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Citrate Synthase From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P3000

b:18.8
occ:1.00
 P2A A:COA3000 0.0 18.8 1.0
O4A A:COA3000 1.5 21.5 1.0
O5A A:COA3000 1.6 24.6 1.0
O3A A:COA3000 1.6 29.5 1.0
O6A A:COA3000 1.6 22.2 1.0
CCP A:COA3000 2.7 16.2 1.0
P1A A:COA3000 2.9 41.8 1.0
O1A A:COA3000 3.4 43.5 1.0
O A:HOH3132 3.4 35.3 1.0
O2A A:COA3000 3.5 34.9 1.0
NE A:ARG263 3.7 13.2 1.0
NH2 A:ARG263 3.8 14.6 1.0
O B:HOH4024 3.8 15.3 1.0
NH2 B:ARG353 4.0 25.9 1.0
CBP A:COA3000 4.0 16.0 1.0
O5B A:COA3000 4.0 39.0 1.0
NE B:ARG353 4.2 23.5 1.0
CZ A:ARG263 4.2 12.4 1.0
CG2 B:ILE354 4.4 10.6 1.0
CAP A:COA3000 4.4 15.6 1.0
CEP A:COA3000 4.5 15.5 1.0
CZ B:ARG353 4.5 25.9 1.0
OAP A:COA3000 4.6 15.5 1.0
CA A:ARG263 4.7 15.9 1.0
CD A:ARG263 4.8 11.5 1.0
CB A:ARG263 4.8 15.1 1.0
N A:ARG263 5.0 15.7 1.0

Phosphorus binding site 4 out of 6 in 1aj8

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Phosphorus binding site 4 out of 6 in the Citrate Synthase From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Citrate Synthase From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P4000

b:65.6
occ:1.00
 P3B B:COA4000 0.0 65.6 1.0
O8A B:COA4000 1.6 66.5 1.0
O9A B:COA4000 1.6 63.7 1.0
O7A B:COA4000 1.6 68.4 1.0
O3B B:COA4000 1.7 60.6 1.0
C3B B:COA4000 2.8 49.7 1.0
C4B B:COA4000 3.4 45.0 1.0
NZ B:LYS305 3.9 74.9 1.0
C2B B:COA4000 4.0 47.4 1.0
O2B B:COA4000 4.2 51.7 1.0
C5B B:COA4000 4.4 41.5 1.0
O4B B:COA4000 4.5 41.7 1.0
CE B:LYS305 4.6 71.3 1.0
C1B B:COA4000 4.7 43.3 1.0

Phosphorus binding site 5 out of 6 in 1aj8

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Phosphorus binding site 5 out of 6 in the Citrate Synthase From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of Citrate Synthase From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P4000

b:37.9
occ:1.00
 P1A B:COA4000 0.0 37.9 1.0
O1A B:COA4000 1.6 35.3 1.0
O2A B:COA4000 1.6 39.2 1.0
O3A B:COA4000 1.6 32.7 1.0
O5B B:COA4000 1.7 39.6 1.0
C5B B:COA4000 2.7 41.5 1.0
P2A B:COA4000 2.9 27.4 1.0
O5A B:COA4000 3.1 30.6 1.0
C4B B:COA4000 3.8 45.0 1.0
O6A B:COA4000 3.9 26.7 1.0
O4A B:COA4000 3.9 27.2 1.0
C3B B:COA4000 4.0 49.7 1.0
O4B B:COA4000 4.3 41.7 1.0
C2B B:COA4000 4.3 47.4 1.0
NH2 A:ARG353 4.4 28.0 1.0
NE A:ARG353 4.5 24.6 1.0
O B:HOH4033 4.5 50.2 1.0
C8A B:COA4000 4.6 37.5 1.0
O A:HOH3147 4.8 20.8 1.0
O B:HOH4106 4.8 53.6 1.0
C1B B:COA4000 4.8 43.3 1.0
CZ A:ARG353 4.9 27.8 1.0
CCP B:COA4000 5.0 23.2 1.0

Phosphorus binding site 6 out of 6 in 1aj8

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Phosphorus binding site 6 out of 6 in the Citrate Synthase From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of Citrate Synthase From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P4000

b:27.4
occ:1.00
 P2A B:COA4000 0.0 27.4 1.0
O5A B:COA4000 1.5 30.6 1.0
O4A B:COA4000 1.6 27.2 1.0
O3A B:COA4000 1.6 32.7 1.0
O6A B:COA4000 1.6 26.7 1.0
CCP B:COA4000 2.7 23.2 1.0
P1A B:COA4000 2.9 37.9 1.0
O1A B:COA4000 3.3 35.3 1.0
O2A B:COA4000 3.6 39.2 1.0
NH2 B:ARG263 3.8 19.3 1.0
NE B:ARG263 3.8 18.0 1.0
O A:HOH3147 3.9 20.8 1.0
CBP B:COA4000 4.0 22.7 1.0
O5B B:COA4000 4.1 39.6 1.0
NH2 A:ARG353 4.2 28.0 1.0
CZ B:ARG263 4.3 19.7 1.0
CAP B:COA4000 4.4 23.0 1.0
CG2 A:ILE354 4.4 19.2 1.0
NE A:ARG353 4.5 24.6 1.0
CEP B:COA4000 4.5 21.9 1.0
OAP B:COA4000 4.6 22.4 1.0
CZ A:ARG353 4.8 27.8 1.0
CA B:ARG263 4.8 19.4 1.0
CD B:ARG263 4.9 13.6 1.0
CB B:ARG263 5.0 17.2 1.0
O B:HOH4106 5.0 53.6 1.0

Reference:

R.J.Russell, J.M.Ferguson, D.W.Hough, M.J.Danson, G.L.Taylor. The Crystal Structure of Citrate Synthase From the Hyperthermophilic Archaeon Pyrococcus Furiosus at 1.9 A Resolution,. Biochemistry V. 36 9983 1997.
ISSN: ISSN 0006-2960
PubMed: 9254593
DOI: 10.1021/BI9705321
Page generated: Fri Sep 25 13:01:12 2020

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