Phosphorus in PDB 1aj8: Citrate Synthase From Pyrococcus Furiosus

Enzymatic activity of Citrate Synthase From Pyrococcus Furiosus

All present enzymatic activity of Citrate Synthase From Pyrococcus Furiosus:
4.1.3.7;

Protein crystallography data

The structure of Citrate Synthase From Pyrococcus Furiosus, PDB code: 1aj8 was solved by R.J.M.Russell, J.M.C.Ferguson, D.W.Hough, M.J.Danson, G.L.Taylor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 100.00 / 1.90
Space group P 41 21 2
Cell size a, b, c (Å), α, β, γ (°) 98.290, 98.290, 238.030, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 23.2

Phosphorus Binding Sites:

The binding sites of Phosphorus atom in the Citrate Synthase From Pyrococcus Furiosus (pdb code 1aj8). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 6 binding sites of Phosphorus where determined in the Citrate Synthase From Pyrococcus Furiosus, PDB code: 1aj8:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6;

Phosphorus binding site 1 out of 6 in 1aj8

Go back to Phosphorus Binding Sites List in 1aj8
Phosphorus binding site 1 out of 6 in the Citrate Synthase From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Citrate Synthase From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P3000

b:38.2
occ:1.00
 P3B A:COA3000 0.0 38.2 1.0
O9A A:COA3000 1.6 40.7 1.0
O8A A:COA3000 1.6 44.5 1.0
O7A A:COA3000 1.6 45.6 1.0
O3B A:COA3000 1.7 38.8 1.0
C3B A:COA3000 2.7 31.6 1.0
C4B A:COA3000 3.5 31.3 1.0
NZ A:LYS305 3.5 24.6 1.0
C2B A:COA3000 3.9 30.7 1.0
O2B A:COA3000 4.2 36.5 1.0
CE A:LYS305 4.2 23.4 1.0
O4B A:COA3000 4.4 25.0 1.0
C5B A:COA3000 4.6 34.5 1.0
C1B A:COA3000 4.6 25.9 1.0
NZ A:LYS254 4.6 59.5 1.0

Phosphorus binding site 2 out of 6 in 1aj8

Go back to Phosphorus Binding Sites List in 1aj8
Phosphorus binding site 2 out of 6 in the Citrate Synthase From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Citrate Synthase From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P3000

b:41.8
occ:1.00
 P1A A:COA3000 0.0 41.8 1.0
O1A A:COA3000 1.6 43.5 1.0
O2A A:COA3000 1.6 34.9 1.0
O3A A:COA3000 1.6 29.5 1.0
O5B A:COA3000 1.7 39.0 1.0
C5B A:COA3000 2.7 34.5 1.0
P2A A:COA3000 2.9 18.8 1.0
O5A A:COA3000 3.1 24.6 1.0
O A:HOH3132 3.4 35.3 1.0
O6A A:COA3000 3.7 22.2 1.0
C4B A:COA3000 3.8 31.3 1.0
O4A A:COA3000 4.0 21.5 1.0
C3B A:COA3000 4.0 31.6 1.0
C2B A:COA3000 4.1 30.7 1.0
C8A A:COA3000 4.2 20.4 1.0
NE B:ARG353 4.3 23.5 1.0
NH2 B:ARG353 4.3 25.9 1.0
O4B A:COA3000 4.3 25.0 1.0
O B:HOH4024 4.6 15.3 1.0
C1B A:COA3000 4.6 25.9 1.0
N9A A:COA3000 4.7 23.1 1.0
CZ B:ARG353 4.8 25.9 1.0
CCP A:COA3000 4.9 16.2 1.0
O B:HOH4093 4.9 47.3 1.0

Phosphorus binding site 3 out of 6 in 1aj8

Go back to Phosphorus Binding Sites List in 1aj8
Phosphorus binding site 3 out of 6 in the Citrate Synthase From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Citrate Synthase From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P3000

b:18.8
occ:1.00
 P2A A:COA3000 0.0 18.8 1.0
O4A A:COA3000 1.5 21.5 1.0
O5A A:COA3000 1.6 24.6 1.0
O3A A:COA3000 1.6 29.5 1.0
O6A A:COA3000 1.6 22.2 1.0
CCP A:COA3000 2.7 16.2 1.0
P1A A:COA3000 2.9 41.8 1.0
O1A A:COA3000 3.4 43.5 1.0
O A:HOH3132 3.4 35.3 1.0
O2A A:COA3000 3.5 34.9 1.0
NE A:ARG263 3.7 13.2 1.0
NH2 A:ARG263 3.8 14.6 1.0
O B:HOH4024 3.8 15.3 1.0
NH2 B:ARG353 4.0 25.9 1.0
CBP A:COA3000 4.0 16.0 1.0
O5B A:COA3000 4.0 39.0 1.0
NE B:ARG353 4.2 23.5 1.0
CZ A:ARG263 4.2 12.4 1.0
CG2 B:ILE354 4.4 10.6 1.0
CAP A:COA3000 4.4 15.6 1.0
CEP A:COA3000 4.5 15.5 1.0
CZ B:ARG353 4.5 25.9 1.0
OAP A:COA3000 4.6 15.5 1.0
CA A:ARG263 4.7 15.9 1.0
CD A:ARG263 4.8 11.5 1.0
CB A:ARG263 4.8 15.1 1.0
N A:ARG263 5.0 15.7 1.0

Phosphorus binding site 4 out of 6 in 1aj8

Go back to Phosphorus Binding Sites List in 1aj8
Phosphorus binding site 4 out of 6 in the Citrate Synthase From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Citrate Synthase From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P4000

b:65.6
occ:1.00
 P3B B:COA4000 0.0 65.6 1.0
O8A B:COA4000 1.6 66.5 1.0
O9A B:COA4000 1.6 63.7 1.0
O7A B:COA4000 1.6 68.4 1.0
O3B B:COA4000 1.7 60.6 1.0
C3B B:COA4000 2.8 49.7 1.0
C4B B:COA4000 3.4 45.0 1.0
NZ B:LYS305 3.9 74.9 1.0
C2B B:COA4000 4.0 47.4 1.0
O2B B:COA4000 4.2 51.7 1.0
C5B B:COA4000 4.4 41.5 1.0
O4B B:COA4000 4.5 41.7 1.0
CE B:LYS305 4.6 71.3 1.0
C1B B:COA4000 4.7 43.3 1.0

Phosphorus binding site 5 out of 6 in 1aj8

Go back to Phosphorus Binding Sites List in 1aj8
Phosphorus binding site 5 out of 6 in the Citrate Synthase From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of Citrate Synthase From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P4000

b:37.9
occ:1.00
 P1A B:COA4000 0.0 37.9 1.0
O1A B:COA4000 1.6 35.3 1.0
O2A B:COA4000 1.6 39.2 1.0
O3A B:COA4000 1.6 32.7 1.0
O5B B:COA4000 1.7 39.6 1.0
C5B B:COA4000 2.7 41.5 1.0
P2A B:COA4000 2.9 27.4 1.0
O5A B:COA4000 3.1 30.6 1.0
C4B B:COA4000 3.8 45.0 1.0
O6A B:COA4000 3.9 26.7 1.0
O4A B:COA4000 3.9 27.2 1.0
C3B B:COA4000 4.0 49.7 1.0
O4B B:COA4000 4.3 41.7 1.0
C2B B:COA4000 4.3 47.4 1.0
NH2 A:ARG353 4.4 28.0 1.0
NE A:ARG353 4.5 24.6 1.0
O B:HOH4033 4.5 50.2 1.0
C8A B:COA4000 4.6 37.5 1.0
O A:HOH3147 4.8 20.8 1.0
O B:HOH4106 4.8 53.6 1.0
C1B B:COA4000 4.8 43.3 1.0
CZ A:ARG353 4.9 27.8 1.0
CCP B:COA4000 5.0 23.2 1.0

Phosphorus binding site 6 out of 6 in 1aj8

Go back to Phosphorus Binding Sites List in 1aj8
Phosphorus binding site 6 out of 6 in the Citrate Synthase From Pyrococcus Furiosus


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of Citrate Synthase From Pyrococcus Furiosus within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P4000

b:27.4
occ:1.00
 P2A B:COA4000 0.0 27.4 1.0
O5A B:COA4000 1.5 30.6 1.0
O4A B:COA4000 1.6 27.2 1.0
O3A B:COA4000 1.6 32.7 1.0
O6A B:COA4000 1.6 26.7 1.0
CCP B:COA4000 2.7 23.2 1.0
P1A B:COA4000 2.9 37.9 1.0
O1A B:COA4000 3.3 35.3 1.0
O2A B:COA4000 3.6 39.2 1.0
NH2 B:ARG263 3.8 19.3 1.0
NE B:ARG263 3.8 18.0 1.0
O A:HOH3147 3.9 20.8 1.0
CBP B:COA4000 4.0 22.7 1.0
O5B B:COA4000 4.1 39.6 1.0
NH2 A:ARG353 4.2 28.0 1.0
CZ B:ARG263 4.3 19.7 1.0
CAP B:COA4000 4.4 23.0 1.0
CG2 A:ILE354 4.4 19.2 1.0
NE A:ARG353 4.5 24.6 1.0
CEP B:COA4000 4.5 21.9 1.0
OAP B:COA4000 4.6 22.4 1.0
CZ A:ARG353 4.8 27.8 1.0
CA B:ARG263 4.8 19.4 1.0
CD B:ARG263 4.9 13.6 1.0
CB B:ARG263 5.0 17.2 1.0
O B:HOH4106 5.0 53.6 1.0

Reference:

R.J.Russell, J.M.Ferguson, D.W.Hough, M.J.Danson, G.L.Taylor. The Crystal Structure of Citrate Synthase From the Hyperthermophilic Archaeon Pyrococcus Furiosus at 1.9 A Resolution,. Biochemistry V. 36 9983 1997.
ISSN: ISSN 0006-2960
PubMed: 9254593
DOI: 10.1021/BI9705321
Page generated: Fri Sep 25 13:01:12 2020

Last articles

Zn in 8PFC
Zn in 8SF0
Zn in 8SOJ
Zn in 8SOK
Zn in 8SYI
Zn in 8SLG
Zn in 8SEX
Zn in 8SEZ
Zn in 8SJG
Zn in 8SEY
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy