Phosphorus in PDB 1ai3: Orbital Steering in the Catalytic Power of Enzymes: Small Structural Changes with Large Catalytic Consequences

Enzymatic activity of Orbital Steering in the Catalytic Power of Enzymes: Small Structural Changes with Large Catalytic Consequences

All present enzymatic activity of Orbital Steering in the Catalytic Power of Enzymes: Small Structural Changes with Large Catalytic Consequences:
1.1.1.42;

Protein crystallography data

The structure of Orbital Steering in the Catalytic Power of Enzymes: Small Structural Changes with Large Catalytic Consequences, PDB code: 1ai3 was solved by B.L.Stoddard, A.Mesecar, D.E.Koshland Junior, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 102.400, 102.400, 150.700, 90.00, 90.00, 90.00
R / Rfree (%) 18.8 / 22

Phosphorus Binding Sites:

The binding sites of Phosphorus atom in the Orbital Steering in the Catalytic Power of Enzymes: Small Structural Changes with Large Catalytic Consequences (pdb code 1ai3). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 3 binding sites of Phosphorus where determined in the Orbital Steering in the Catalytic Power of Enzymes: Small Structural Changes with Large Catalytic Consequences, PDB code: 1ai3:
Jump to Phosphorus binding site number: 1; 2; 3;

Phosphorus binding site 1 out of 3 in 1ai3

Go back to Phosphorus Binding Sites List in 1ai3
Phosphorus binding site 1 out of 3 in the Orbital Steering in the Catalytic Power of Enzymes: Small Structural Changes with Large Catalytic Consequences


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Orbital Steering in the Catalytic Power of Enzymes: Small Structural Changes with Large Catalytic Consequences within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P417

b:45.2
occ:1.00
 PA A:NDO417 0.0 45.2 1.0
O2A A:NDO417 1.4 41.3 1.0
O3 A:NDO417 1.5 52.0 1.0
O5B A:NDO417 1.6 43.3 1.0
O1A A:NDO417 1.6 42.5 1.0
C5B A:NDO417 2.7 42.2 1.0
PN A:NDO417 2.9 45.6 1.0
O2N A:NDO417 3.5 54.8 1.0
O1N A:NDO417 3.7 52.8 1.0
C4B A:NDO417 3.9 37.1 1.0
O3B A:NDO417 4.0 35.9 1.0
O5D A:NDO417 4.2 41.2 1.0
C3B A:NDO417 4.2 45.5 1.0
CA A:GLY340 4.5 15.2 1.0
C5D A:NDO417 4.6 41.0 1.0
C3D A:NDO417 4.7 44.2 1.0

Phosphorus binding site 2 out of 3 in 1ai3

Go back to Phosphorus Binding Sites List in 1ai3
Phosphorus binding site 2 out of 3 in the Orbital Steering in the Catalytic Power of Enzymes: Small Structural Changes with Large Catalytic Consequences


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Orbital Steering in the Catalytic Power of Enzymes: Small Structural Changes with Large Catalytic Consequences within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P417

b:45.6
occ:1.00
 PN A:NDO417 0.0 45.6 1.0
O1N A:NDO417 1.5 52.8 1.0
O2N A:NDO417 1.5 54.8 1.0
O3 A:NDO417 1.6 52.0 1.0
O5D A:NDO417 1.8 41.2 1.0
C5D A:NDO417 2.8 41.0 1.0
PA A:NDO417 2.9 45.2 1.0
O5B A:NDO417 3.6 43.3 1.0
O1A A:NDO417 3.7 42.5 1.0
CD A:PRO343 3.8 15.6 1.0
O A:HOH518 3.8 44.6 1.0
C3D A:NDO417 3.9 44.2 1.0
C4D A:NDO417 3.9 39.5 1.0
O2A A:NDO417 4.0 41.3 1.0
CG A:PRO343 4.3 19.9 1.0
N A:ALA342 4.4 12.6 1.0
O3D A:NDO417 4.4 42.6 1.0
O3B A:NDO417 4.6 35.9 1.0
O4D A:NDO417 4.7 40.8 1.0
CA A:ALA342 4.7 13.3 1.0

Phosphorus binding site 3 out of 3 in 1ai3

Go back to Phosphorus Binding Sites List in 1ai3
Phosphorus binding site 3 out of 3 in the Orbital Steering in the Catalytic Power of Enzymes: Small Structural Changes with Large Catalytic Consequences


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Orbital Steering in the Catalytic Power of Enzymes: Small Structural Changes with Large Catalytic Consequences within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P417

b:49.7
occ:1.00
 P2B A:NDO417 0.0 49.7 1.0
O2X A:NDO417 1.5 48.6 1.0
O3X A:NDO417 1.5 51.0 1.0
O1X A:NDO417 1.5 44.2 1.0
O2B A:NDO417 1.6 38.1 1.0
C2B A:NDO417 2.7 40.8 1.0
NH2 A:ARG395 3.4 21.2 1.0
C1B A:NDO417 3.5 35.9 1.0
C3B A:NDO417 3.9 45.5 1.0
NH1 A:ARG395 4.1 21.2 1.0
CZ A:ARG395 4.2 21.2 1.0
O4B A:NDO417 4.3 41.2 1.0
O3B A:NDO417 4.3 35.9 1.0
C4B A:NDO417 4.4 37.1 1.0
N9A A:NDO417 4.7 43.4 1.0
N3A A:NDO417 4.8 47.6 1.0

Reference:

A.D.Mesecar, B.L.Stoddard, D.E.Koshland Jr.. Orbital Steering in the Catalytic Power of Enzymes: Small Structural Changes with Large Catalytic Consequences. Science V. 277 202 1997.
ISSN: ISSN 0036-8075
PubMed: 9211842
DOI: 10.1126/SCIENCE.277.5323.202
Page generated: Fri Sep 25 12:58:21 2020

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy