Phosphorus in PDB 1ahv: Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol

Enzymatic activity of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol

All present enzymatic activity of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol:
1.1.3.13;

Protein crystallography data

The structure of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol, PDB code: 1ahv was solved by A.Mattevi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 3.10
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 140.620, 140.620, 132.510, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 24.9

Phosphorus Binding Sites:

The binding sites of Phosphorus atom in the Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol (pdb code 1ahv). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 4 binding sites of Phosphorus where determined in the Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol, PDB code: 1ahv:
Jump to Phosphorus binding site number: 1; 2; 3; 4;

Phosphorus binding site 1 out of 4 in 1ahv

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Phosphorus binding site 1 out of 4 in the Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P600

b:23.1
occ:1.00
 PA A:FAD600 0.0 23.1 1.0
O2A A:FAD600 1.5 20.9 1.0
O1A A:FAD600 1.5 30.2 1.0
O5B A:FAD600 1.6 21.4 1.0
O3P A:FAD600 1.6 17.4 1.0
C5B A:FAD600 2.5 18.7 1.0
P A:FAD600 2.9 18.8 1.0
O2P A:FAD600 3.2 18.1 1.0
O5' A:FAD600 3.6 15.6 1.0
N A:GLY103 3.6 14.3 1.0
C4B A:FAD600 3.9 18.1 1.0
O1P A:FAD600 4.1 18.9 1.0
N A:ILE102 4.1 7.7 1.0
CB A:ASN105 4.1 18.7 1.0
N A:ARG104 4.2 8.4 1.0
N A:ASN105 4.3 12.6 1.0
CA A:GLY103 4.3 12.6 1.0
N A:SER101 4.3 15.5 1.0
C3B A:FAD600 4.4 22.7 1.0
C8A A:FAD600 4.5 15.8 1.0
C A:GLY103 4.5 16.8 1.0
C5' A:FAD600 4.6 13.3 1.0
C A:ILE102 4.6 15.4 1.0
CA A:ILE102 4.6 5.3 1.0
CB A:ILE100 4.7 6.0 1.0
CA A:ASN105 4.8 14.3 1.0
O4B A:FAD600 4.9 17.6 1.0
CA A:ILE100 4.9 1.2 1.0
CB A:ILE102 5.0 12.4 1.0

Phosphorus binding site 2 out of 4 in 1ahv

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Phosphorus binding site 2 out of 4 in the Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P600

b:18.8
occ:1.00
 P A:FAD600 0.0 18.8 1.0
O2P A:FAD600 1.5 18.1 1.0
O1P A:FAD600 1.5 18.9 1.0
O5' A:FAD600 1.6 15.6 1.0
O3P A:FAD600 1.6 17.4 1.0
C5' A:FAD600 2.6 13.3 1.0
PA A:FAD600 2.9 23.1 1.0
O1A A:FAD600 3.3 30.2 1.0
C4' A:FAD600 3.3 12.0 1.0
O4' A:FAD600 3.3 8.8 1.0
O2A A:FAD600 3.7 20.9 1.0
N A:SER175 3.8 6.8 1.0
N A:ASN105 3.9 12.6 1.0
C A:ARG104 4.0 16.7 1.0
O5B A:FAD600 4.1 21.4 1.0
N A:ARG104 4.1 8.4 1.0
CA A:ARG104 4.1 8.8 1.0
CA A:GLY174 4.3 20.0 1.0
CB A:ILE102 4.4 12.4 1.0
CB A:SER175 4.4 9.4 1.0
CA A:ASN105 4.5 14.3 1.0
C5B A:FAD600 4.5 18.7 1.0
CB A:ARG104 4.5 8.4 1.0
CB A:ASN105 4.6 18.7 1.0
C A:GLY174 4.6 15.5 1.0
O A:ARG104 4.6 19.4 1.0
N A:ASN179 4.6 2.3 1.0
CA A:SER175 4.7 4.2 1.0
N A:GLY103 4.8 14.3 1.0
C3' A:FAD600 4.8 17.8 1.0
C A:GLY178 4.8 3.6 1.0
CA A:GLY178 4.9 2.7 1.0
O A:SER175 4.9 2.2 1.0
CG2 A:ILE102 5.0 17.0 1.0
N A:ILE102 5.0 7.7 1.0

Phosphorus binding site 3 out of 4 in 1ahv

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Phosphorus binding site 3 out of 4 in the Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P600

b:23.1
occ:1.00
 PA B:FAD600 0.0 23.1 1.0
O2A B:FAD600 1.5 20.9 1.0
O1A B:FAD600 1.5 30.2 1.0
O5B B:FAD600 1.6 21.4 1.0
O3P B:FAD600 1.6 17.4 1.0
C5B B:FAD600 2.5 18.7 1.0
P B:FAD600 2.9 18.8 1.0
O2P B:FAD600 3.2 18.1 1.0
O5' B:FAD600 3.6 15.6 1.0
N B:GLY103 3.6 14.3 1.0
C4B B:FAD600 3.9 18.1 1.0
O1P B:FAD600 4.1 18.9 1.0
N B:ILE102 4.1 7.7 1.0
CB B:ASN105 4.1 18.7 1.0
N B:ARG104 4.2 8.4 1.0
N B:ASN105 4.3 12.6 1.0
CA B:GLY103 4.3 12.6 1.0
N B:SER101 4.3 15.5 1.0
C3B B:FAD600 4.4 22.7 1.0
C8A B:FAD600 4.5 15.8 1.0
C B:GLY103 4.5 16.8 1.0
C5' B:FAD600 4.6 13.3 1.0
C B:ILE102 4.6 15.4 1.0
CA B:ILE102 4.6 5.3 1.0
CB B:ILE100 4.7 6.0 1.0
CA B:ASN105 4.8 14.3 1.0
O4B B:FAD600 4.9 17.6 1.0
CA B:ILE100 4.9 1.2 1.0
CB B:ILE102 5.0 12.4 1.0

Phosphorus binding site 4 out of 4 in 1ahv

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Phosphorus binding site 4 out of 4 in the Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P600

b:18.8
occ:1.00
 P B:FAD600 0.0 18.8 1.0
O2P B:FAD600 1.5 18.1 1.0
O1P B:FAD600 1.5 18.9 1.0
O5' B:FAD600 1.6 15.6 1.0
O3P B:FAD600 1.6 17.4 1.0
C5' B:FAD600 2.6 13.3 1.0
PA B:FAD600 2.9 23.1 1.0
O1A B:FAD600 3.3 30.2 1.0
C4' B:FAD600 3.3 12.0 1.0
O4' B:FAD600 3.3 8.8 1.0
O2A B:FAD600 3.7 20.9 1.0
N B:SER175 3.8 6.8 1.0
N B:ASN105 3.9 12.6 1.0
C B:ARG104 4.0 16.7 1.0
O5B B:FAD600 4.1 21.4 1.0
N B:ARG104 4.1 8.4 1.0
CA B:ARG104 4.1 8.8 1.0
CA B:GLY174 4.3 20.0 1.0
CB B:ILE102 4.4 12.4 1.0
CB B:SER175 4.4 9.4 1.0
CA B:ASN105 4.5 14.3 1.0
C5B B:FAD600 4.5 18.7 1.0
CB B:ARG104 4.5 8.4 1.0
CB B:ASN105 4.6 18.7 1.0
C B:GLY174 4.6 15.5 1.0
O B:ARG104 4.6 19.4 1.0
N B:ASN179 4.6 2.3 1.0
CA B:SER175 4.7 4.2 1.0
N B:GLY103 4.8 14.3 1.0
C3' B:FAD600 4.8 17.8 1.0
C B:GLY178 4.8 3.6 1.0
CA B:GLY178 4.9 2.7 1.0
O B:SER175 4.9 2.2 1.0
CG2 B:ILE102 5.0 17.0 1.0
N B:ILE102 5.0 7.7 1.0

Reference:

A.Mattevi, M.W.Fraaije, A.Mozzarelli, L.Olivi, A.Coda, W.J.Van Berkel. Crystal Structures and Inhibitor Binding in the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase: the Shape of the Active-Site Cavity Controls Substrate Specificity. Structure V. 5 907 1997.
ISSN: ISSN 0969-2126
PubMed: 9261083
DOI: 10.1016/S0969-2126(97)00245-1
Page generated: Fri Sep 25 12:57:34 2020

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