Phosphorus in PDB 1ahv: Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol

Enzymatic activity of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol

All present enzymatic activity of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol:
1.1.3.13;

Protein crystallography data

The structure of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol, PDB code: 1ahv was solved by A.Mattevi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 3.10
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 140.620, 140.620, 132.510, 90.00, 90.00, 90.00
R / Rfree (%) 20.5 / 24.9

Phosphorus Binding Sites:

The binding sites of Phosphorus atom in the Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol (pdb code 1ahv). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 4 binding sites of Phosphorus where determined in the Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol, PDB code: 1ahv:
Jump to Phosphorus binding site number: 1; 2; 3; 4;

Phosphorus binding site 1 out of 4 in 1ahv

Go back to Phosphorus Binding Sites List in 1ahv
Phosphorus binding site 1 out of 4 in the Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P600

b:23.1
occ:1.00
 PA A:FAD600 0.0 23.1 1.0
O2A A:FAD600 1.5 20.9 1.0
O1A A:FAD600 1.5 30.2 1.0
O5B A:FAD600 1.6 21.4 1.0
O3P A:FAD600 1.6 17.4 1.0
C5B A:FAD600 2.5 18.7 1.0
P A:FAD600 2.9 18.8 1.0
O2P A:FAD600 3.2 18.1 1.0
O5' A:FAD600 3.6 15.6 1.0
N A:GLY103 3.6 14.3 1.0
C4B A:FAD600 3.9 18.1 1.0
O1P A:FAD600 4.1 18.9 1.0
N A:ILE102 4.1 7.7 1.0
CB A:ASN105 4.1 18.7 1.0
N A:ARG104 4.2 8.4 1.0
N A:ASN105 4.3 12.6 1.0
CA A:GLY103 4.3 12.6 1.0
N A:SER101 4.3 15.5 1.0
C3B A:FAD600 4.4 22.7 1.0
C8A A:FAD600 4.5 15.8 1.0
C A:GLY103 4.5 16.8 1.0
C5' A:FAD600 4.6 13.3 1.0
C A:ILE102 4.6 15.4 1.0
CA A:ILE102 4.6 5.3 1.0
CB A:ILE100 4.7 6.0 1.0
CA A:ASN105 4.8 14.3 1.0
O4B A:FAD600 4.9 17.6 1.0
CA A:ILE100 4.9 1.2 1.0
CB A:ILE102 5.0 12.4 1.0

Phosphorus binding site 2 out of 4 in 1ahv

Go back to Phosphorus Binding Sites List in 1ahv
Phosphorus binding site 2 out of 4 in the Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P600

b:18.8
occ:1.00
 P A:FAD600 0.0 18.8 1.0
O2P A:FAD600 1.5 18.1 1.0
O1P A:FAD600 1.5 18.9 1.0
O5' A:FAD600 1.6 15.6 1.0
O3P A:FAD600 1.6 17.4 1.0
C5' A:FAD600 2.6 13.3 1.0
PA A:FAD600 2.9 23.1 1.0
O1A A:FAD600 3.3 30.2 1.0
C4' A:FAD600 3.3 12.0 1.0
O4' A:FAD600 3.3 8.8 1.0
O2A A:FAD600 3.7 20.9 1.0
N A:SER175 3.8 6.8 1.0
N A:ASN105 3.9 12.6 1.0
C A:ARG104 4.0 16.7 1.0
O5B A:FAD600 4.1 21.4 1.0
N A:ARG104 4.1 8.4 1.0
CA A:ARG104 4.1 8.8 1.0
CA A:GLY174 4.3 20.0 1.0
CB A:ILE102 4.4 12.4 1.0
CB A:SER175 4.4 9.4 1.0
CA A:ASN105 4.5 14.3 1.0
C5B A:FAD600 4.5 18.7 1.0
CB A:ARG104 4.5 8.4 1.0
CB A:ASN105 4.6 18.7 1.0
C A:GLY174 4.6 15.5 1.0
O A:ARG104 4.6 19.4 1.0
N A:ASN179 4.6 2.3 1.0
CA A:SER175 4.7 4.2 1.0
N A:GLY103 4.8 14.3 1.0
C3' A:FAD600 4.8 17.8 1.0
C A:GLY178 4.8 3.6 1.0
CA A:GLY178 4.9 2.7 1.0
O A:SER175 4.9 2.2 1.0
CG2 A:ILE102 5.0 17.0 1.0
N A:ILE102 5.0 7.7 1.0

Phosphorus binding site 3 out of 4 in 1ahv

Go back to Phosphorus Binding Sites List in 1ahv
Phosphorus binding site 3 out of 4 in the Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P600

b:23.1
occ:1.00
 PA B:FAD600 0.0 23.1 1.0
O2A B:FAD600 1.5 20.9 1.0
O1A B:FAD600 1.5 30.2 1.0
O5B B:FAD600 1.6 21.4 1.0
O3P B:FAD600 1.6 17.4 1.0
C5B B:FAD600 2.5 18.7 1.0
P B:FAD600 2.9 18.8 1.0
O2P B:FAD600 3.2 18.1 1.0
O5' B:FAD600 3.6 15.6 1.0
N B:GLY103 3.6 14.3 1.0
C4B B:FAD600 3.9 18.1 1.0
O1P B:FAD600 4.1 18.9 1.0
N B:ILE102 4.1 7.7 1.0
CB B:ASN105 4.1 18.7 1.0
N B:ARG104 4.2 8.4 1.0
N B:ASN105 4.3 12.6 1.0
CA B:GLY103 4.3 12.6 1.0
N B:SER101 4.3 15.5 1.0
C3B B:FAD600 4.4 22.7 1.0
C8A B:FAD600 4.5 15.8 1.0
C B:GLY103 4.5 16.8 1.0
C5' B:FAD600 4.6 13.3 1.0
C B:ILE102 4.6 15.4 1.0
CA B:ILE102 4.6 5.3 1.0
CB B:ILE100 4.7 6.0 1.0
CA B:ASN105 4.8 14.3 1.0
O4B B:FAD600 4.9 17.6 1.0
CA B:ILE100 4.9 1.2 1.0
CB B:ILE102 5.0 12.4 1.0

Phosphorus binding site 4 out of 4 in 1ahv

Go back to Phosphorus Binding Sites List in 1ahv
Phosphorus binding site 4 out of 4 in the Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with 2-Nitro-P-Cresol within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P600

b:18.8
occ:1.00
 P B:FAD600 0.0 18.8 1.0
O2P B:FAD600 1.5 18.1 1.0
O1P B:FAD600 1.5 18.9 1.0
O5' B:FAD600 1.6 15.6 1.0
O3P B:FAD600 1.6 17.4 1.0
C5' B:FAD600 2.6 13.3 1.0
PA B:FAD600 2.9 23.1 1.0
O1A B:FAD600 3.3 30.2 1.0
C4' B:FAD600 3.3 12.0 1.0
O4' B:FAD600 3.3 8.8 1.0
O2A B:FAD600 3.7 20.9 1.0
N B:SER175 3.8 6.8 1.0
N B:ASN105 3.9 12.6 1.0
C B:ARG104 4.0 16.7 1.0
O5B B:FAD600 4.1 21.4 1.0
N B:ARG104 4.1 8.4 1.0
CA B:ARG104 4.1 8.8 1.0
CA B:GLY174 4.3 20.0 1.0
CB B:ILE102 4.4 12.4 1.0
CB B:SER175 4.4 9.4 1.0
CA B:ASN105 4.5 14.3 1.0
C5B B:FAD600 4.5 18.7 1.0
CB B:ARG104 4.5 8.4 1.0
CB B:ASN105 4.6 18.7 1.0
C B:GLY174 4.6 15.5 1.0
O B:ARG104 4.6 19.4 1.0
N B:ASN179 4.6 2.3 1.0
CA B:SER175 4.7 4.2 1.0
N B:GLY103 4.8 14.3 1.0
C3' B:FAD600 4.8 17.8 1.0
C B:GLY178 4.8 3.6 1.0
CA B:GLY178 4.9 2.7 1.0
O B:SER175 4.9 2.2 1.0
CG2 B:ILE102 5.0 17.0 1.0
N B:ILE102 5.0 7.7 1.0

Reference:

A.Mattevi, M.W.Fraaije, A.Mozzarelli, L.Olivi, A.Coda, W.J.Van Berkel. Crystal Structures and Inhibitor Binding in the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase: the Shape of the Active-Site Cavity Controls Substrate Specificity. Structure V. 5 907 1997.
ISSN: ISSN 0969-2126
PubMed: 9261083
DOI: 10.1016/S0969-2126(97)00245-1
Page generated: Fri Sep 25 12:57:34 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy