Phosphorus in PDB 1ahu: Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with P-Cresol

Enzymatic activity of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with P-Cresol

All present enzymatic activity of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with P-Cresol:
1.1.3.13;

Protein crystallography data

The structure of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with P-Cresol, PDB code: 1ahu was solved by A.Mattevi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.70
Space group I 4
Cell size a, b, c (Å), α, β, γ (°) 128.820, 128.820, 130.790, 90.00, 90.00, 90.00
R / Rfree (%) 22.1 / 29.3

Phosphorus Binding Sites:

The binding sites of Phosphorus atom in the Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with P-Cresol (pdb code 1ahu). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 4 binding sites of Phosphorus where determined in the Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with P-Cresol, PDB code: 1ahu:
Jump to Phosphorus binding site number: 1; 2; 3; 4;

Phosphorus binding site 1 out of 4 in 1ahu

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Phosphorus binding site 1 out of 4 in the Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with P-Cresol


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with P-Cresol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P600

b:29.3
occ:1.00
 PA A:FAA600 0.0 29.3 1.0
O2A A:FAA600 1.5 28.6 1.0
O1A A:FAA600 1.5 29.2 1.0
O5B A:FAA600 1.6 26.0 1.0
O3P A:FAA600 1.6 27.9 1.0
C5B A:FAA600 2.7 24.8 1.0
P A:FAA600 3.0 26.1 1.0
O2P A:FAA600 3.2 25.0 1.0
N A:GLY103 3.5 21.4 1.0
N A:ILE102 3.8 16.1 1.0
O5' A:FAA600 3.8 26.7 1.0
C4B A:FAA600 4.0 25.1 1.0
N A:ASN105 4.0 38.5 1.0
O1P A:FAA600 4.0 25.7 1.0
CB A:ASN105 4.1 40.0 1.0
CA A:ILE102 4.2 22.0 1.0
N A:ARG104 4.2 34.4 1.0
C3B A:FAA600 4.3 26.1 1.0
C A:ILE102 4.3 28.8 1.0
N A:SER101 4.3 21.6 1.0
CA A:GLY103 4.3 22.8 1.0
C8A A:FAA600 4.4 28.5 1.0
C A:GLY103 4.4 36.7 1.0
CB A:ILE100 4.5 10.5 1.0
CA A:ASN105 4.6 40.9 1.0
CB A:ILE102 4.7 28.0 1.0
C5' A:FAA600 4.7 29.1 1.0
C A:ARG104 4.8 42.9 1.0
O3B A:FAA600 4.8 27.2 1.0
CA A:ILE100 4.8 7.0 1.0
CA A:ARG104 4.9 35.9 1.0
C A:SER101 4.9 16.2 1.0
CB A:SER101 4.9 9.7 1.0
CG A:ASN105 5.0 82.6 1.0

Phosphorus binding site 2 out of 4 in 1ahu

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Phosphorus binding site 2 out of 4 in the Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with P-Cresol


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with P-Cresol within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P600

b:26.1
occ:1.00
 P A:FAA600 0.0 26.1 1.0
O1P A:FAA600 1.5 25.7 1.0
O2P A:FAA600 1.5 25.0 1.0
O5' A:FAA600 1.6 26.7 1.0
O3P A:FAA600 1.6 27.9 1.0
C5' A:FAA600 2.8 29.1 1.0
PA A:FAA600 3.0 29.3 1.0
O1A A:FAA600 3.5 29.2 1.0
O2A A:FAA600 3.6 28.6 1.0
C4' A:FAA600 3.7 32.2 1.0
CB A:ILE102 3.8 28.0 1.0
O4' A:FAA600 3.8 34.0 1.0
N A:ARG104 3.8 34.4 1.0
CA A:ARG104 3.9 35.9 1.0
C A:ARG104 3.9 42.9 1.0
CB A:ARG104 3.9 38.5 1.0
N A:ASN105 3.9 38.5 1.0
O5B A:FAA600 4.1 26.0 1.0
N A:SER175 4.1 13.7 1.0
CG2 A:ILE102 4.1 29.1 1.0
N A:GLY103 4.2 21.4 1.0
CA A:ILE102 4.3 22.0 1.0
CA A:GLY174 4.4 30.4 1.0
O A:ARG104 4.5 46.2 1.0
N A:ILE102 4.6 16.1 1.0
CB A:SER175 4.6 7.3 1.0
C5B A:FAA600 4.6 24.8 1.0
CA A:ASN105 4.6 40.9 1.0
C A:ILE102 4.8 28.8 1.0
C A:GLY174 4.8 24.0 1.0
C A:GLY103 4.9 36.7 1.0
CB A:ASN105 4.9 40.0 1.0
CG1 A:ILE102 5.0 28.6 1.0
CA A:SER175 5.0 9.9 1.0

Phosphorus binding site 3 out of 4 in 1ahu

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Phosphorus binding site 3 out of 4 in the Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with P-Cresol


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with P-Cresol within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P600

b:29.3
occ:1.00
 PA B:FAA600 0.0 29.3 1.0
O1A B:FAA600 1.5 29.2 1.0
O2A B:FAA600 1.5 28.6 1.0
O5B B:FAA600 1.6 26.0 1.0
O3P B:FAA600 1.6 27.9 1.0
C5B B:FAA600 2.7 24.8 1.0
P B:FAA600 3.0 26.1 1.0
O2P B:FAA600 3.2 25.0 1.0
N B:GLY103 3.5 21.4 1.0
N B:ILE102 3.8 16.1 1.0
O5' B:FAA600 3.8 26.7 1.0
C4B B:FAA600 4.0 25.1 1.0
N B:ASN105 4.0 38.5 1.0
O1P B:FAA600 4.0 25.7 1.0
CB B:ASN105 4.1 40.0 1.0
CA B:ILE102 4.2 22.0 1.0
N B:ARG104 4.2 34.4 1.0
C3B B:FAA600 4.3 26.1 1.0
C B:ILE102 4.3 28.8 1.0
N B:SER101 4.3 21.6 1.0
CA B:GLY103 4.3 22.8 1.0
C8A B:FAA600 4.4 28.5 1.0
C B:GLY103 4.4 36.7 1.0
CB B:ILE100 4.5 10.5 1.0
CA B:ASN105 4.6 40.9 1.0
CB B:ILE102 4.7 28.0 1.0
C5' B:FAA600 4.7 29.1 1.0
C B:ARG104 4.8 42.9 1.0
O3B B:FAA600 4.8 27.2 1.0
CA B:ILE100 4.8 7.0 1.0
CA B:ARG104 4.9 35.9 1.0
C B:SER101 4.9 16.2 1.0
CB B:SER101 4.9 9.7 1.0
CG B:ASN105 5.0 82.6 1.0

Phosphorus binding site 4 out of 4 in 1ahu

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Phosphorus binding site 4 out of 4 in the Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with P-Cresol


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Structure of the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase in Complex with P-Cresol within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P600

b:26.1
occ:1.00
 P B:FAA600 0.0 26.1 1.0
O1P B:FAA600 1.5 25.7 1.0
O2P B:FAA600 1.5 25.0 1.0
O5' B:FAA600 1.6 26.7 1.0
O3P B:FAA600 1.6 27.9 1.0
C5' B:FAA600 2.8 29.1 1.0
PA B:FAA600 3.0 29.3 1.0
O1A B:FAA600 3.5 29.2 1.0
O2A B:FAA600 3.6 28.6 1.0
C4' B:FAA600 3.7 32.2 1.0
CB B:ILE102 3.8 28.0 1.0
O4' B:FAA600 3.8 34.0 1.0
N B:ARG104 3.8 34.4 1.0
CA B:ARG104 3.9 35.9 1.0
C B:ARG104 3.9 42.9 1.0
CB B:ARG104 3.9 38.5 1.0
N B:ASN105 3.9 38.5 1.0
O5B B:FAA600 4.1 26.0 1.0
N B:SER175 4.1 13.7 1.0
CG2 B:ILE102 4.1 29.1 1.0
N B:GLY103 4.2 21.4 1.0
CA B:ILE102 4.3 22.0 1.0
CA B:GLY174 4.4 30.4 1.0
O B:ARG104 4.5 46.2 1.0
N B:ILE102 4.6 16.1 1.0
CB B:SER175 4.6 7.3 1.0
C5B B:FAA600 4.6 24.8 1.0
CA B:ASN105 4.6 40.9 1.0
C B:ILE102 4.8 28.8 1.0
C B:GLY174 4.8 24.0 1.0
C B:GLY103 4.9 36.7 1.0
CB B:ASN105 4.9 40.0 1.0
CG1 B:ILE102 5.0 28.6 1.0
CA B:SER175 5.0 9.9 1.0

Reference:

A.Mattevi, M.W.Fraaije, A.Mozzarelli, L.Olivi, A.Coda, W.J.Van Berkel. Crystal Structures and Inhibitor Binding in the Octameric Flavoenzyme Vanillyl-Alcohol Oxidase: the Shape of the Active-Site Cavity Controls Substrate Specificity. Structure V. 5 907 1997.
ISSN: ISSN 0969-2126
PubMed: 9261083
DOI: 10.1016/S0969-2126(97)00245-1
Page generated: Fri Sep 25 12:57:33 2020

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