Phosphorus in PDB 1ahh: 7 Alpha-Hydroxysteroid Dehydrogenase Complexed with Nad+
Enzymatic activity of 7 Alpha-Hydroxysteroid Dehydrogenase Complexed with Nad+
All present enzymatic activity of 7 Alpha-Hydroxysteroid Dehydrogenase Complexed with Nad+:
1.1.1.159;
Protein crystallography data
The structure of 7 Alpha-Hydroxysteroid Dehydrogenase Complexed with Nad+, PDB code: 1ahh
was solved by
N.Tanaka,
T.Nonaka,
Y.Mitsui,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
8.00 /
2.30
|
Space group
|
P 41 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
81.660,
81.660,
214.600,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
18.2 /
26.5
|
Phosphorus Binding Sites:
The binding sites of Phosphorus atom in the 7 Alpha-Hydroxysteroid Dehydrogenase Complexed with Nad+
(pdb code 1ahh). This binding sites where shown within
5.0 Angstroms radius around Phosphorus atom.
In total 4 binding sites of Phosphorus where determined in the
7 Alpha-Hydroxysteroid Dehydrogenase Complexed with Nad+, PDB code: 1ahh:
Jump to Phosphorus binding site number:
1;
2;
3;
4;
Phosphorus binding site 1 out
of 4 in 1ahh
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Phosphorus Binding Sites List in 1ahh
Phosphorus binding site 1 out
of 4 in the 7 Alpha-Hydroxysteroid Dehydrogenase Complexed with Nad+
 Mono view
 Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 1 of 7 Alpha-Hydroxysteroid Dehydrogenase Complexed with Nad+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P256
b:63.4
occ:1.00
|
PA
|
A:NAD256
|
0.0
|
63.4
|
1.0
|
O1A
|
A:NAD256
|
1.5
|
62.8
|
1.0
|
O2A
|
A:NAD256
|
1.5
|
64.9
|
1.0
|
O5B
|
A:NAD256
|
1.6
|
56.6
|
1.0
|
O3
|
A:NAD256
|
1.6
|
64.4
|
1.0
|
C5B
|
A:NAD256
|
2.6
|
49.6
|
1.0
|
PN
|
A:NAD256
|
3.1
|
61.2
|
1.0
|
O2N
|
A:NAD256
|
3.5
|
62.1
|
1.0
|
O1N
|
A:NAD256
|
3.8
|
58.9
|
1.0
|
C4B
|
A:NAD256
|
3.9
|
44.8
|
1.0
|
C3B
|
A:NAD256
|
4.1
|
38.1
|
1.0
|
O5D
|
A:NAD256
|
4.1
|
52.3
|
1.0
|
O
|
A:HOH259
|
4.6
|
19.8
|
1.0
|
C2B
|
A:NAD256
|
4.8
|
36.0
|
1.0
|
O4B
|
A:NAD256
|
4.9
|
42.5
|
1.0
|
C5D
|
A:NAD256
|
4.9
|
42.6
|
1.0
|
|
Phosphorus binding site 2 out
of 4 in 1ahh
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Phosphorus Binding Sites List in 1ahh
Phosphorus binding site 2 out
of 4 in the 7 Alpha-Hydroxysteroid Dehydrogenase Complexed with Nad+
 Mono view
 Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 2 of 7 Alpha-Hydroxysteroid Dehydrogenase Complexed with Nad+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P256
b:61.2
occ:1.00
|
PN
|
A:NAD256
|
0.0
|
61.2
|
1.0
|
O2N
|
A:NAD256
|
1.5
|
62.1
|
1.0
|
O1N
|
A:NAD256
|
1.5
|
58.9
|
1.0
|
O5D
|
A:NAD256
|
1.6
|
52.3
|
1.0
|
O3
|
A:NAD256
|
1.6
|
64.4
|
1.0
|
C5D
|
A:NAD256
|
2.7
|
42.6
|
1.0
|
PA
|
A:NAD256
|
3.1
|
63.4
|
1.0
|
O2A
|
A:NAD256
|
3.5
|
64.9
|
1.0
|
O5B
|
A:NAD256
|
3.7
|
56.6
|
1.0
|
O
|
A:HOH259
|
3.9
|
19.8
|
1.0
|
C4D
|
A:NAD256
|
3.9
|
38.9
|
1.0
|
O4D
|
A:NAD256
|
4.1
|
37.6
|
1.0
|
O1A
|
A:NAD256
|
4.2
|
62.8
|
1.0
|
C2N
|
A:NAD256
|
4.2
|
28.5
|
1.0
|
N7N
|
A:NAD256
|
4.2
|
23.9
|
1.0
|
C5B
|
A:NAD256
|
4.3
|
49.6
|
1.0
|
C3D
|
A:NAD256
|
4.5
|
33.6
|
1.0
|
CG2
|
A:THR194
|
4.6
|
56.5
|
1.0
|
C2D
|
A:NAD256
|
4.6
|
35.6
|
1.0
|
C1D
|
A:NAD256
|
4.8
|
33.2
|
1.0
|
N
|
A:ILE23
|
4.9
|
33.0
|
1.0
|
CD1
|
A:ILE23
|
5.0
|
19.1
|
1.0
|
N1N
|
A:NAD256
|
5.0
|
23.9
|
1.0
|
|
Phosphorus binding site 3 out
of 4 in 1ahh
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Phosphorus Binding Sites List in 1ahh
Phosphorus binding site 3 out
of 4 in the 7 Alpha-Hydroxysteroid Dehydrogenase Complexed with Nad+
 Mono view
 Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 3 of 7 Alpha-Hydroxysteroid Dehydrogenase Complexed with Nad+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:P256
b:55.9
occ:1.00
|
PA
|
B:NAD256
|
0.0
|
55.9
|
1.0
|
O1A
|
B:NAD256
|
1.5
|
51.7
|
1.0
|
O2A
|
B:NAD256
|
1.5
|
51.2
|
1.0
|
O3
|
B:NAD256
|
1.6
|
56.6
|
1.0
|
O5B
|
B:NAD256
|
1.6
|
50.0
|
1.0
|
C5B
|
B:NAD256
|
2.6
|
43.4
|
1.0
|
PN
|
B:NAD256
|
3.0
|
51.5
|
1.0
|
O1N
|
B:NAD256
|
3.5
|
57.5
|
1.0
|
O2N
|
B:NAD256
|
3.8
|
51.0
|
1.0
|
C4B
|
B:NAD256
|
3.8
|
38.3
|
1.0
|
C3B
|
B:NAD256
|
3.9
|
37.1
|
1.0
|
O5D
|
B:NAD256
|
3.9
|
47.6
|
1.0
|
O4B
|
B:NAD256
|
4.3
|
36.1
|
1.0
|
C5D
|
B:NAD256
|
4.4
|
35.1
|
1.0
|
C2B
|
B:NAD256
|
4.4
|
34.2
|
1.0
|
O
|
B:HOH259
|
4.5
|
20.7
|
1.0
|
|
Phosphorus binding site 4 out
of 4 in 1ahh
Go back to
Phosphorus Binding Sites List in 1ahh
Phosphorus binding site 4 out
of 4 in the 7 Alpha-Hydroxysteroid Dehydrogenase Complexed with Nad+
 Mono view
 Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 4 of 7 Alpha-Hydroxysteroid Dehydrogenase Complexed with Nad+ within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:P256
b:51.5
occ:1.00
|
PN
|
B:NAD256
|
0.0
|
51.5
|
1.0
|
O1N
|
B:NAD256
|
1.5
|
57.5
|
1.0
|
O2N
|
B:NAD256
|
1.5
|
51.0
|
1.0
|
O3
|
B:NAD256
|
1.6
|
56.6
|
1.0
|
O5D
|
B:NAD256
|
1.6
|
47.6
|
1.0
|
C5D
|
B:NAD256
|
2.6
|
35.1
|
1.0
|
PA
|
B:NAD256
|
3.0
|
55.9
|
1.0
|
O2A
|
B:NAD256
|
3.4
|
51.2
|
1.0
|
O1A
|
B:NAD256
|
3.8
|
51.7
|
1.0
|
C4D
|
B:NAD256
|
3.9
|
32.3
|
1.0
|
N7N
|
B:NAD256
|
3.9
|
27.6
|
1.0
|
O5B
|
B:NAD256
|
4.0
|
50.0
|
1.0
|
C2N
|
B:NAD256
|
4.0
|
31.2
|
1.0
|
O4D
|
B:NAD256
|
4.0
|
34.5
|
1.0
|
O
|
B:HOH259
|
4.3
|
20.7
|
1.0
|
C5B
|
B:NAD256
|
4.3
|
43.4
|
1.0
|
CD1
|
B:ILE23
|
4.6
|
16.9
|
1.0
|
C3D
|
B:NAD256
|
4.6
|
27.3
|
1.0
|
C2D
|
B:NAD256
|
4.6
|
27.3
|
1.0
|
C1D
|
B:NAD256
|
4.7
|
34.5
|
1.0
|
N1N
|
B:NAD256
|
4.8
|
32.1
|
1.0
|
C7N
|
B:NAD256
|
4.9
|
28.9
|
1.0
|
C3N
|
B:NAD256
|
4.9
|
30.2
|
1.0
|
CG1
|
B:ILE23
|
5.0
|
11.6
|
1.0
|
|
Reference:
N.Tanaka,
T.Nonaka,
T.Tanabe,
T.Yoshimoto,
D.Tsuru,
Y.Mitsui.
Crystal Structures of the Binary and Ternary Complexes of 7 Alpha-Hydroxysteroid Dehydrogenase From Escherichia Coli. Biochemistry V. 35 7715 1996.
ISSN: ISSN 0006-2960
PubMed: 8672472
DOI: 10.1021/BI951904D
Page generated: Fri Sep 25 12:56:45 2020
|