Phosphorus in PDB 1ahd: Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex

Phosphorus Binding Sites:

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Binding sites:

The binding sites of Phosphorus atom in the Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex (pdb code 1ahd). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 26 binding sites of Phosphorus where determined in the Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex, PDB code: 1ahd:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Phosphorus binding site 1 out of 26 in 1ahd

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Phosphorus binding site 1 out of 26 in the Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P2

b:3.6
occ:1.00
P A:DA2 0.0 3.6 1.0
OP2 A:DA2 1.5 3.6 1.0
OP1 A:DA2 1.5 4.2 1.0
O3' A:DG1 1.6 4.2 1.0
O5' A:DA2 1.6 3.2 1.0
C3' A:DG1 2.6 4.2 1.0
C5' A:DA2 2.6 3.4 1.0
H5' A:DA2 2.7 3.7 1.0
H3' A:DG1 2.7 4.0 1.0
H5'' A:DA2 3.3 3.6 1.0
H5'' A:DG1 3.4 5.5 1.0
C4' A:DG1 3.6 4.8 1.0
O4' A:DA2 3.7 3.3 1.0
H4' A:DG1 3.7 5.1 1.0
C4' A:DA2 3.7 3.4 1.0
C2' A:DG1 3.8 4.0 1.0
H2'' A:DG1 3.8 4.1 1.0
H2' A:DA2 3.9 2.9 1.0
H8 A:DA2 4.0 2.8 1.0
C5' A:DG1 4.0 5.3 1.0
C8 A:DA2 4.2 2.7 1.0
H2' A:DG1 4.3 3.7 1.0
H3' A:DA2 4.4 3.3 1.0
C1' A:DA2 4.4 3.0 1.0
N9 A:DA2 4.5 2.8 1.0
O5' A:DG1 4.5 5.0 1.0
C3' A:DA2 4.5 3.3 1.0
C2' A:DA2 4.5 3.0 1.0
H4' A:DA2 4.6 3.7 1.0
N7 A:DA2 4.8 2.5 1.0
O4' A:DG1 4.8 4.9 1.0
C1' A:DG1 4.9 4.5 1.0
H5' A:DG1 4.9 5.8 1.0

Phosphorus binding site 2 out of 26 in 1ahd

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Phosphorus binding site 2 out of 26 in the Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P3

b:3.8
occ:1.00
P A:DA3 0.0 3.8 1.0
OP2 A:DA3 1.5 3.8 1.0
OP1 A:DA3 1.5 4.5 1.0
O5' A:DA3 1.6 3.5 1.0
O3' A:DA2 1.6 3.7 1.0
C5' A:DA3 2.6 3.8 1.0
C3' A:DA2 2.7 3.3 1.0
H5' A:DA3 2.8 4.1 1.0
H3' A:DA2 2.9 3.3 1.0
H2'' A:DA2 2.9 3.1 1.0
H5'' A:DA3 3.0 4.3 1.0
C2' A:DA2 3.3 3.0 1.0
C4' A:DA3 3.9 3.4 1.0
C4' A:DA2 4.0 3.4 1.0
H3' A:DA3 4.0 3.2 1.0
H4' A:DA2 4.0 3.7 1.0
H2' A:DA2 4.0 2.9 1.0
H1' A:DA2 4.0 3.3 1.0
O4' A:DA3 4.2 3.0 1.0
C1' A:DA2 4.3 3.0 1.0
H8 A:DA3 4.5 2.4 1.0
C3' A:DA3 4.5 3.2 1.0
O4' A:DA2 4.7 3.3 1.0
H4' A:DA3 4.8 3.8 1.0
H5'' A:DA2 5.0 3.6 1.0

Phosphorus binding site 3 out of 26 in 1ahd

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Phosphorus binding site 3 out of 26 in the Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4

b:4.3
occ:1.00
P A:DA4 0.0 4.3 1.0
OP1 A:DA4 1.5 5.5 1.0
OP2 A:DA4 1.5 4.5 1.0
O3' A:DA3 1.6 3.9 1.0
O5' A:DA4 1.6 3.5 1.0
C3' A:DA3 2.6 3.2 1.0
C5' A:DA4 2.7 3.8 1.0
H5' A:DA4 2.8 4.1 1.0
HD2 P:LYS46 2.8 2.4 1.0
H3' A:DA3 2.8 3.2 1.0
HZ3 P:LYS46 2.9 2.8 1.0
H5'' A:DA4 3.1 4.3 1.0
H8 A:DA4 3.3 2.5 1.0
C2' A:DA3 3.4 2.6 1.0
H2'' A:DA3 3.4 2.7 1.0
HE3 P:LYS46 3.4 1.7 1.0
H2' A:DA3 3.4 2.3 1.0
CD P:LYS46 3.6 1.9 1.0
NZ P:LYS46 3.7 2.5 1.0
CE P:LYS46 3.8 1.9 1.0
HG2 P:LYS46 3.9 2.3 1.0
C4' A:DA3 3.9 3.4 1.0
C4' A:DA4 4.0 3.1 1.0
O4' A:DA4 4.1 2.6 1.0
C8 A:DA4 4.2 2.2 1.0
H4' A:DA3 4.2 3.8 1.0
H5'' A:DA3 4.2 4.3 1.0
CG P:LYS46 4.2 1.6 1.0
HZ2 P:LYS46 4.3 2.9 1.0
HZ1 P:LYS46 4.4 3.4 1.0
HG3 P:LYS46 4.4 2.8 1.0
HD3 P:LYS46 4.5 2.6 1.0
H2' A:DA4 4.5 2.3 1.0
C5' A:DA3 4.5 3.8 1.0
H3' A:DA4 4.7 2.9 1.0
H4' A:DA4 4.7 3.5 1.0
C1' A:DA3 4.8 2.7 1.0
HB3 P:GLU42 4.8 1.7 1.0
HG3 P:ARG28 4.8 4.7 1.0
O5' A:DA3 4.8 3.5 1.0
C3' A:DA4 4.8 2.6 1.0
HE2 P:LYS46 4.8 2.8 1.0
N9 A:DA4 4.9 2.1 1.0
C1' A:DA4 4.9 2.3 1.0
O4' A:DA3 4.9 3.0 1.0
N7 A:DA4 5.0 1.9 1.0
C2' A:DA4 5.0 2.3 1.0

Phosphorus binding site 4 out of 26 in 1ahd

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Phosphorus binding site 4 out of 26 in the Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P5

b:2.1
occ:1.00
P A:DG5 0.0 2.1 1.0
OP2 A:DG5 1.5 2.5 1.0
OP1 A:DG5 1.5 2.2 1.0
O5' A:DG5 1.6 1.8 1.0
O3' A:DA4 1.6 2.3 1.0
HH21 P:ARG31 2.5 4.7 1.0
HE P:ARG31 2.5 2.7 1.0
C5' A:DG5 2.6 1.6 1.0
C3' A:DA4 2.7 2.6 1.0
HH22 P:ARG53 2.7 5.5 1.0
H5' A:DG5 2.8 1.7 1.0
H3' A:DA4 2.8 2.9 1.0
H2'' A:DA4 2.9 2.2 1.0
H5'' A:DG5 3.0 1.7 1.0
H P:LEU26 3.2 2.7 1.0
C2' A:DA4 3.3 2.3 1.0
HH21 P:ARG53 3.3 5.4 1.0
NH2 P:ARG53 3.3 4.8 1.0
NH2 P:ARG31 3.4 4.7 1.0
NE P:ARG31 3.5 2.1 1.0
CZ P:ARG31 3.8 3.5 1.0
HA P:TYR25 3.9 2.3 1.0
O P:LEU26 3.9 3.1 1.0
C4' A:DG5 3.9 1.4 1.0
H4' A:DA4 4.0 3.5 1.0
C4' A:DA4 4.0 3.1 1.0
H2' A:DA4 4.0 2.3 1.0
HB2 P:LEU26 4.1 2.2 1.0
HH22 P:ARG31 4.1 6.0 1.0
H3' A:DG5 4.1 2.0 1.0
O4' A:DG5 4.2 1.5 1.0
N P:LEU26 4.2 2.3 1.0
H1' A:DA4 4.3 2.3 1.0
HG3 P:ARG31 4.3 3.2 1.0
C1' A:DA4 4.4 2.3 1.0
H8 A:DG5 4.6 1.6 1.0
C3' A:DG5 4.6 1.6 1.0
CZ P:ARG53 4.6 3.5 1.0
CD P:ARG31 4.6 1.5 1.0
O4' A:DA4 4.7 2.6 1.0
H4' A:DG5 4.8 1.5 1.0
HH12 P:ARG53 4.8 4.5 1.0
CG P:ARG31 4.8 2.0 1.0
HG2 P:ARG31 4.8 2.6 1.0
HA P:LYS46 4.8 0.7 1.0
CA P:TYR25 4.9 2.1 1.0
C P:LEU26 4.9 2.7 1.0
HD2 P:ARG31 4.9 2.0 1.0
HA P:ARG28 5.0 3.6 1.0
H5'' A:DA4 5.0 4.3 1.0
CB P:LEU26 5.0 2.2 1.0
CA P:LEU26 5.0 2.4 1.0

Phosphorus binding site 5 out of 26 in 1ahd

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Phosphorus binding site 5 out of 26 in the Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P6

b:2.1
occ:1.00
P A:DC6 0.0 2.1 1.0
OP2 A:DC6 1.5 2.5 1.0
OP1 A:DC6 1.5 2.5 1.0
O5' A:DC6 1.6 1.7 1.0
O3' A:DG5 1.6 1.7 1.0
C3' A:DG5 2.6 1.6 1.0
HH11 P:ARG53 2.6 3.5 1.0
C5' A:DC6 2.6 1.5 1.0
H3' A:DG5 2.8 2.0 1.0
H5' A:DC6 2.9 1.5 1.0
H5'' A:DC6 3.0 1.7 1.0
NH1 P:ARG53 3.0 3.7 1.0
HH12 P:ARG53 3.2 4.5 1.0
HD2 P:ARG53 3.2 2.6 1.0
C2' A:DG5 3.3 1.6 1.0
H2' A:DG5 3.3 2.1 1.0
H2'' A:DG5 3.4 1.9 1.0
CZ P:ARG53 3.4 3.5 1.0
H3' A:DC6 3.8 1.5 1.0
NE P:ARG53 3.9 2.8 1.0
CD P:ARG53 3.9 1.7 1.0
C4' A:DC6 3.9 1.3 1.0
C4' A:DG5 4.0 1.4 1.0
HD3 P:ARG53 4.0 2.0 1.0
HH22 P:ARG53 4.0 5.5 1.0
NH2 P:ARG53 4.1 4.8 1.0
H6 A:DC6 4.2 1.6 1.0
O4' A:DC6 4.2 1.2 1.0
H4' A:DG5 4.2 1.5 1.0
CZ P:TYR25 4.3 3.1 1.0
HH P:TYR25 4.3 3.5 1.0
H5'' A:DG5 4.4 1.7 1.0
C3' A:DC6 4.4 1.3 1.0
HE P:ARG53 4.5 3.7 1.0
HE3 P:MET54 4.5 2.0 1.0
OH P:TYR25 4.5 3.7 1.0
CE2 P:TYR25 4.5 3.4 1.0
CE1 P:TYR25 4.6 3.3 1.0
C5' A:DG5 4.6 1.6 1.0
HH21 P:ARG53 4.7 5.4 1.0
C1' A:DG5 4.8 1.4 1.0
H4' A:DC6 4.8 1.3 1.0
HE2 P:TYR25 4.8 4.4 1.0
HE1 P:TYR25 4.9 4.2 1.0
O5' A:DG5 4.9 1.8 1.0
O4' A:DG5 4.9 1.5 1.0

Phosphorus binding site 6 out of 26 in 1ahd

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Phosphorus binding site 6 out of 26 in the Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P7

b:1.1
occ:1.00
P A:DC7 0.0 1.1 1.0
OP1 A:DC7 1.5 1.4 1.0
OP2 A:DC7 1.5 1.2 1.0
O5' A:DC7 1.6 0.9 1.0
O3' A:DC6 1.6 1.2 1.0
C5' A:DC7 2.6 1.1 1.0
C3' A:DC6 2.6 1.3 1.0
H3' A:DC6 2.7 1.5 1.0
H5' A:DC7 2.7 1.4 1.0
HE2 P:LYS57 3.0 6.0 1.0
H5'' A:DC7 3.0 1.3 1.0
H2'' A:DC6 3.5 1.6 1.0
C2' A:DC6 3.5 1.5 1.0
HD3 P:LYS57 3.6 4.8 1.0
H2' A:DC6 3.9 1.7 1.0
C4' A:DC6 3.9 1.3 1.0
CE P:LYS57 4.0 4.9 1.0
C4' A:DC7 4.0 1.1 1.0
H5'' A:DC6 4.0 1.7 1.0
HE1 P:MET54 4.0 2.0 1.0
H4' A:DC6 4.1 1.3 1.0
CD P:LYS57 4.2 4.2 1.0
HD2 P:LYS57 4.2 4.5 1.0
O4' A:DC7 4.3 1.0 1.0
H3' A:DC7 4.3 1.0 1.0
C5' A:DC6 4.5 1.5 1.0
HE3 P:LYS57 4.5 5.1 1.0
HE3 P:MET54 4.7 2.0 1.0
HZ2 P:LYS57 4.7 5.4 1.0
C3' A:DC7 4.7 1.0 1.0
H4' A:DC7 4.7 1.4 1.0
CE P:MET54 4.7 1.6 1.0
NZ P:LYS57 4.9 5.0 1.0
C1' A:DC6 4.9 1.3 1.0
O5' A:DC6 4.9 1.7 1.0
HE2 P:MET54 5.0 2.0 1.0
O4' A:DC6 5.0 1.2 1.0

Phosphorus binding site 7 out of 26 in 1ahd

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Phosphorus binding site 7 out of 26 in the Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 7 of Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P8

b:1.7
occ:1.00
P A:DA8 0.0 1.7 1.0
OP1 A:DA8 1.5 2.2 1.0
OP2 A:DA8 1.5 1.8 1.0
O5' A:DA8 1.6 1.6 1.0
O3' A:DC7 1.6 1.4 1.0
C5' A:DA8 2.6 1.7 1.0
C3' A:DC7 2.7 1.0 1.0
H5' A:DA8 2.8 1.8 1.0
H5'' A:DA8 2.9 2.1 1.0
H2'' A:DC7 3.0 1.1 1.0
H3' A:DC7 3.1 1.0 1.0
HZ2 P:LYS58 3.1 9.4 1.0
H8 A:DA8 3.2 1.2 1.0
C2' A:DC7 3.2 1.0 1.0
HE2 P:LYS58 3.3 8.9 1.0
H2' A:DC7 3.3 0.9 1.0
NZ P:LYS58 3.8 8.5 1.0
HZ1 P:LYS58 3.9 8.9 1.0
C4' A:DA8 3.9 1.7 1.0
C4' A:DC7 4.0 1.1 1.0
CE P:LYS58 4.0 8.0 1.0
H2' A:DA8 4.0 1.5 1.0
C8 A:DA8 4.0 1.1 1.0
H4' A:DC7 4.1 1.4 1.0
O4' A:DA8 4.2 1.4 1.0
H3' A:DA8 4.2 1.9 1.0
HE3 P:LYS58 4.3 8.1 1.0
H5'' A:DC7 4.5 1.3 1.0
HG3 P:MET54 4.5 1.6 1.0
C3' A:DA8 4.5 1.8 1.0
C1' A:DC7 4.6 1.0 1.0
C2' A:DA8 4.7 1.5 1.0
HZ3 P:LYS58 4.7 8.2 1.0
H4' A:DA8 4.7 1.9 1.0
N7 A:DA8 4.8 0.9 1.0
N9 A:DA8 4.8 1.1 1.0
C5' A:DC7 4.8 1.1 1.0
C1' A:DA8 4.8 1.4 1.0
O4' A:DC7 4.9 1.0 1.0

Phosphorus binding site 8 out of 26 in 1ahd

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Phosphorus binding site 8 out of 26 in the Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 8 of Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P9

b:2.1
occ:1.00
P A:DT9 0.0 2.1 1.0
OP1 A:DT9 1.5 2.5 1.0
OP2 A:DT9 1.5 2.2 1.0
O3' A:DA8 1.6 2.0 1.0
O5' A:DT9 1.6 1.8 1.0
C5' A:DT9 2.6 1.8 1.0
C3' A:DA8 2.6 1.8 1.0
H5' A:DT9 2.7 2.0 1.0
H2'' A:DA8 2.8 1.5 1.0
H3' A:DA8 2.9 1.9 1.0
H5'' A:DT9 3.1 1.9 1.0
C2' A:DA8 3.3 1.5 1.0
C4' A:DT9 3.9 1.4 1.0
C4' A:DA8 3.9 1.7 1.0
H2' A:DA8 4.0 1.5 1.0
O4' A:DT9 4.0 1.4 1.0
H4' A:DA8 4.0 1.9 1.0
H1' A:DA8 4.2 1.4 1.0
H6 A:DT9 4.3 1.4 1.0
C1' A:DA8 4.3 1.4 1.0
H4' A:DT9 4.6 1.5 1.0
O4' A:DA8 4.7 1.4 1.0
H3' A:DT9 4.7 1.3 1.0
H5'' A:DA8 4.9 2.1 1.0
C3' A:DT9 4.9 1.0 1.0

Phosphorus binding site 9 out of 26 in 1ahd

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Phosphorus binding site 9 out of 26 in the Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 9 of Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P10

b:1.4
occ:1.00
P A:DT10 0.0 1.4 1.0
OP2 A:DT10 1.5 1.9 1.0
OP1 A:DT10 1.5 2.1 1.0
O5' A:DT10 1.6 1.1 1.0
O3' A:DT9 1.6 1.0 1.0
C5' A:DT10 2.6 1.1 1.0
C3' A:DT9 2.7 1.0 1.0
H5' A:DT10 2.8 1.2 1.0
H3' A:DT9 2.9 1.3 1.0
H5'' A:DT10 3.0 1.3 1.0
H2'' A:DT9 3.1 1.0 1.0
C2' A:DT9 3.4 1.0 1.0
H4' A:DT9 3.9 1.5 1.0
C4' A:DT10 3.9 0.9 1.0
C4' A:DT9 3.9 1.4 1.0
H3' A:DT10 4.1 1.0 1.0
H2' A:DT9 4.1 1.1 1.0
O4' A:DT10 4.2 0.7 1.0
H1' A:DT9 4.4 1.1 1.0
C1' A:DT9 4.5 1.1 1.0
H5'' A:DT9 4.5 1.9 1.0
H6 A:DT10 4.6 0.6 1.0
C3' A:DT10 4.6 0.9 1.0
H4' A:DT10 4.7 1.1 1.0
C5' A:DT9 4.9 1.8 1.0
O4' A:DT9 4.9 1.4 1.0

Phosphorus binding site 10 out of 26 in 1ahd

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Phosphorus binding site 10 out of 26 in the Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 10 of Determination of the uc(Nmr) Solution Structure of An Antennapedia Homeodomain-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P11

b:1.4
occ:1.00
P A:DA11 0.0 1.4 1.0
OP1 A:DA11 1.5 1.6 1.0
OP2 A:DA11 1.5 1.7 1.0
O5' A:DA11 1.6 1.8 1.0
O3' A:DT10 1.6 1.1 1.0
C5' A:DA11 2.7 1.3 1.0
C3' A:DT10 2.7 0.9 1.0
H2'' A:DT10 2.9 1.3 1.0
H5' A:DA11 2.9 2.2 1.0
H5'' A:DA11 3.0 2.2 1.0
H3' A:DT10 3.0 1.0 1.0
C2' A:DT10 3.2 0.9 1.0
H2' A:DT10 3.6 1.0 1.0
H8 A:DA11 3.8 1.9 1.0
C4' A:DA11 3.9 1.6 1.0
C4' A:DT10 4.0 0.9 1.0
H4' A:DT10 4.0 1.1 1.0
H4' A:DA11 4.1 1.9 1.0
O4' A:DA11 4.2 1.6 1.0
C1' A:DT10 4.5 0.8 1.0
H5'' A:DT10 4.5 1.3 1.0
H1' A:DT10 4.7 1.1 1.0
C8 A:DA11 4.8 1.6 1.0
C5' A:DT10 4.9 1.1 1.0
O4' A:DT10 4.9 0.7 1.0

Reference:

M.Billeter, Y.Q.Qian, G.Otting, M.Muller, W.Gehring, K.Wuthrich. Determination of the Nuclear Magnetic Resonance Solution Structure of An Antennapedia Homeodomain-Dna Complex. J.Mol.Biol. V. 234 1084 1993.
ISSN: ISSN 0022-2836
PubMed: 7903398
DOI: 10.1006/JMBI.1993.1661
Page generated: Fri Sep 25 12:56:19 2020

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