Phosphorus in PDB 1ah0: Pig Aldose Reductase Complexed with Sorbinil

Enzymatic activity of Pig Aldose Reductase Complexed with Sorbinil

All present enzymatic activity of Pig Aldose Reductase Complexed with Sorbinil:
1.1.1.21;

Protein crystallography data

The structure of Pig Aldose Reductase Complexed with Sorbinil, PDB code: 1ah0 was solved by D.Moras, A.D.Podjarny, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 2.30
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 67.920, 67.920, 152.800, 90.00, 90.00, 90.00
R / Rfree (%) 19.2 / 26.3

Phosphorus Binding Sites:

The binding sites of Phosphorus atom in the Pig Aldose Reductase Complexed with Sorbinil (pdb code 1ah0). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 3 binding sites of Phosphorus where determined in the Pig Aldose Reductase Complexed with Sorbinil, PDB code: 1ah0:
Jump to Phosphorus binding site number: 1; 2; 3;

Phosphorus binding site 1 out of 3 in 1ah0

Go back to Phosphorus Binding Sites List in 1ah0
Phosphorus binding site 1 out of 3 in the Pig Aldose Reductase Complexed with Sorbinil


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Pig Aldose Reductase Complexed with Sorbinil within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P318

b:40.4
occ:1.00
PA A:NAP318 0.0 40.4 1.0
O2A A:NAP318 1.5 34.2 1.0
O1A A:NAP318 1.5 39.2 1.0
O5B A:NAP318 1.6 40.7 1.0
O3 A:NAP318 1.6 42.4 1.0
C5B A:NAP318 2.7 39.2 1.0
PN A:NAP318 3.0 37.5 1.0
H A:SER214 3.1 20.0 1.0
O5D A:NAP318 3.3 31.4 1.0
H A:LEU212 3.4 20.0 1.0
H A:LYS262 3.5 20.0 1.0
O1N A:NAP318 3.6 37.7 1.0
C5D A:NAP318 3.7 23.3 1.0
N A:SER214 3.9 44.0 1.0
C4B A:NAP318 3.9 37.5 1.0
CA A:SER214 4.0 45.6 1.0
CA A:SER210 4.0 40.5 1.0
O2N A:NAP318 4.1 33.8 1.0
CB A:LEU212 4.1 31.2 1.0
O4B A:NAP318 4.3 38.2 1.0
OG A:SER214 4.3 47.0 1.0
N A:LEU212 4.3 38.4 1.0
HZ2 A:LYS21 4.4 20.0 1.0
N A:LYS262 4.4 32.3 1.0
C A:SER210 4.4 44.6 1.0
CD A:PRO211 4.5 38.8 1.0
CD1 A:LEU212 4.5 37.1 1.0
CG A:LEU212 4.6 39.1 1.0
CA A:LEU212 4.6 30.1 1.0
CB A:SER210 4.6 40.5 1.0
OG A:SER210 4.6 37.7 1.0
N A:PRO211 4.6 43.2 1.0
CD A:PRO215 4.7 47.2 1.0
CB A:LYS262 4.7 26.0 1.0
CB A:SER214 4.7 43.2 1.0
H A:SER210 4.7 20.0 1.0
C A:LEU212 4.7 35.5 1.0
H A:GLY213 4.7 20.0 1.0
N A:GLY213 4.8 41.2 1.0
N A:SER210 4.8 38.4 1.0
O A:LYS262 4.9 31.2 1.0
O A:SER210 5.0 50.0 1.0
HG A:SER214 5.0 20.0 1.0

Phosphorus binding site 2 out of 3 in 1ah0

Go back to Phosphorus Binding Sites List in 1ah0
Phosphorus binding site 2 out of 3 in the Pig Aldose Reductase Complexed with Sorbinil


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Pig Aldose Reductase Complexed with Sorbinil within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P318

b:37.5
occ:1.00
PN A:NAP318 0.0 37.5 1.0
O2N A:NAP318 1.5 33.8 1.0
O1N A:NAP318 1.5 37.7 1.0
O3 A:NAP318 1.6 42.4 1.0
O5D A:NAP318 1.6 31.4 1.0
HZ2 A:LYS21 2.5 20.0 1.0
C5D A:NAP318 2.7 23.3 1.0
PA A:NAP318 3.0 40.4 1.0
OG A:SER214 3.3 47.0 1.0
HO3N A:NAP318 3.3 20.0 1.0
C3D A:NAP318 3.4 26.4 1.0
HG A:SER214 3.5 20.0 1.0
O2A A:NAP318 3.5 34.2 1.0
OG A:SER210 3.5 37.7 1.0
C4D A:NAP318 3.5 27.9 1.0
NZ A:LYS21 3.6 32.0 1.0
O3D A:NAP318 3.9 29.7 1.0
HZ3 A:LYS21 3.9 20.0 1.0
O1A A:NAP318 3.9 39.2 1.0
O5B A:NAP318 3.9 40.7 1.0
H A:SER210 4.0 20.0 1.0
C6N A:NAP318 4.0 9.4 1.0
O4D A:NAP318 4.1 31.6 1.0
HG A:SER210 4.1 20.0 1.0
HZ1 A:LYS21 4.1 20.0 1.0
CE3 A:TRP20 4.2 26.3 1.0
CA A:SER210 4.2 40.5 1.0
C5B A:NAP318 4.2 39.2 1.0
CE A:LYS21 4.3 35.7 1.0
CB A:LYS262 4.3 26.0 1.0
CB A:SER210 4.4 40.5 1.0
CB A:SER214 4.4 43.2 1.0
N A:SER210 4.5 38.4 1.0
H A:LYS262 4.6 20.0 1.0
CA A:SER214 4.7 45.6 1.0
C2D A:NAP318 4.7 19.8 1.0
CZ3 A:TRP20 4.7 27.8 1.0
H A:SER214 4.7 20.0 1.0
C1D A:NAP318 4.8 21.7 1.0
C5N A:NAP318 4.9 13.1 1.0
N1N A:NAP318 4.9 20.3 1.0

Phosphorus binding site 3 out of 3 in 1ah0

Go back to Phosphorus Binding Sites List in 1ah0
Phosphorus binding site 3 out of 3 in the Pig Aldose Reductase Complexed with Sorbinil


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Pig Aldose Reductase Complexed with Sorbinil within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P318

b:53.8
occ:1.00
P2B A:NAP318 0.0 53.8 1.0
O3X A:NAP318 1.5 56.0 1.0
O2X A:NAP318 1.5 49.7 1.0
O1X A:NAP318 1.5 44.6 1.0
O2B A:NAP318 1.6 45.8 1.0
HH21 A:ARG268 2.3 20.0 1.0
C2B A:NAP318 2.7 39.7 1.0
HZ1 A:LYS262 3.1 20.0 1.0
HG1 A:THR265 3.1 20.0 1.0
H A:VAL264 3.2 20.0 1.0
NH2 A:ARG268 3.2 44.4 1.0
HO3A A:NAP318 3.3 20.0 1.0
HE A:ARG268 3.3 20.0 1.0
OG1 A:THR265 3.5 27.0 1.0
OG A:SER263 3.6 39.4 1.0
O A:HOH586 3.6 60.9 1.0
HG A:SER263 3.6 20.0 1.0
C3B A:NAP318 3.6 35.4 1.0
HH22 A:ARG268 3.8 20.0 1.0
C1B A:NAP318 3.9 38.0 1.0
H A:THR265 3.9 20.0 1.0
NZ A:LYS262 4.0 21.1 1.0
HZ2 A:LYS262 4.0 20.0 1.0
O3B A:NAP318 4.0 40.9 1.0
NE A:ARG268 4.0 48.1 1.0
CZ A:ARG268 4.1 51.9 1.0
N A:VAL264 4.1 33.5 1.0
CA A:SER263 4.2 34.3 1.0
CG2 A:VAL264 4.2 34.0 1.0
N9A A:NAP318 4.3 34.5 1.0
CB A:SER263 4.4 33.0 1.0
CB A:THR265 4.5 28.4 1.0
N A:THR265 4.5 31.3 1.0
C8A A:NAP318 4.6 26.3 1.0
O A:HOH709 4.7 57.1 1.0
O A:LYS262 4.7 31.2 1.0
CE A:LYS262 4.7 17.7 1.0
HZ3 A:LYS262 4.7 20.0 1.0
C A:SER263 4.8 35.8 1.0
O A:HOH710 4.9 71.2 1.0
C4B A:NAP318 4.9 37.5 1.0

Reference:

A.Urzhumtsev, F.Tete-Favier, A.Mitschler, J.Barbanton, P.Barth, L.Urzhumtseva, J.F.Biellmann, A.Podjarny, D.Moras. A 'Specificity' Pocket Inferred From the Crystal Structures of the Complexes of Aldose Reductase with the Pharmaceutically Important Inhibitors Tolrestat and Sorbinil. Structure V. 5 601 1997.
ISSN: ISSN 0969-2126
PubMed: 9195881
DOI: 10.1016/S0969-2126(97)00216-5
Page generated: Fri Sep 25 12:55:14 2020

Last articles

Zn in 7M6U
Zn in 7NNG
Zn in 7NEE
Zn in 7NEU
Zn in 7M3K
Zn in 7KWD
Zn in 7KYH
Zn in 7KNG
Zn in 7KY2
Zn in 7KYF
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy