Phosphorus in PDB 1ag9: Flavodoxins That Are Required For Enzyme Activation: the Structure of Oxidized Flavodoxin From Escherichia Coli at 1.8 Angstroms Resolution.
Protein crystallography data
The structure of Flavodoxins That Are Required For Enzyme Activation: the Structure of Oxidized Flavodoxin From Escherichia Coli at 1.8 Angstroms Resolution., PDB code: 1ag9
was solved by
D.M.Hoover,
M.L.Ludwig,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
10.00 /
1.80
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
126.400,
41.100,
68.150,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
19.6 /
25
|
Phosphorus Binding Sites:
The binding sites of Phosphorus atom in the Flavodoxins That Are Required For Enzyme Activation: the Structure of Oxidized Flavodoxin From Escherichia Coli at 1.8 Angstroms Resolution.
(pdb code 1ag9). This binding sites where shown within
5.0 Angstroms radius around Phosphorus atom.
In total 2 binding sites of Phosphorus where determined in the
Flavodoxins That Are Required For Enzyme Activation: the Structure of Oxidized Flavodoxin From Escherichia Coli at 1.8 Angstroms Resolution., PDB code: 1ag9:
Jump to Phosphorus binding site number:
1;
2;
Phosphorus binding site 1 out
of 2 in 1ag9
Go back to
Phosphorus Binding Sites List in 1ag9
Phosphorus binding site 1 out
of 2 in the Flavodoxins That Are Required For Enzyme Activation: the Structure of Oxidized Flavodoxin From Escherichia Coli at 1.8 Angstroms Resolution.
 Mono view
 Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 1 of Flavodoxins That Are Required For Enzyme Activation: the Structure of Oxidized Flavodoxin From Escherichia Coli at 1.8 Angstroms Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P177
b:16.2
occ:1.00
|
P
|
A:FMN177
|
0.0
|
16.2
|
1.0
|
O3P
|
A:FMN177
|
1.4
|
14.4
|
1.0
|
O5'
|
A:FMN177
|
1.5
|
14.8
|
1.0
|
O1P
|
A:FMN177
|
1.5
|
17.5
|
1.0
|
O2P
|
A:FMN177
|
1.5
|
16.9
|
1.0
|
C5'
|
A:FMN177
|
2.5
|
13.2
|
1.0
|
OG
|
A:SER10
|
3.6
|
18.3
|
1.0
|
N
|
A:THR12
|
3.6
|
15.6
|
1.0
|
OG1
|
A:THR12
|
3.7
|
26.1
|
1.0
|
N
|
A:ASP11
|
3.7
|
18.6
|
1.0
|
C4'
|
A:FMN177
|
3.8
|
13.6
|
1.0
|
N
|
A:ASN14
|
3.8
|
16.0
|
1.0
|
CB
|
A:PRO55
|
3.9
|
11.0
|
1.0
|
CG
|
A:PRO55
|
3.9
|
12.7
|
1.0
|
NE1
|
A:TRP57
|
3.9
|
16.6
|
1.0
|
CB
|
A:ASN14
|
4.0
|
14.0
|
1.0
|
N
|
A:THR15
|
4.0
|
14.8
|
1.0
|
OG1
|
A:THR15
|
4.0
|
11.2
|
1.0
|
CZ2
|
A:TRP57
|
4.1
|
20.7
|
1.0
|
N
|
A:GLY13
|
4.1
|
17.4
|
1.0
|
O4'
|
A:FMN177
|
4.2
|
13.6
|
1.0
|
CA
|
A:ASN14
|
4.3
|
14.3
|
1.0
|
CA
|
A:THR12
|
4.3
|
17.8
|
1.0
|
CE2
|
A:TRP57
|
4.4
|
19.1
|
1.0
|
CA
|
A:SER10
|
4.4
|
17.1
|
1.0
|
C
|
A:THR12
|
4.4
|
19.2
|
1.0
|
CB
|
A:SER10
|
4.5
|
15.3
|
1.0
|
CA
|
A:ASP11
|
4.5
|
19.4
|
1.0
|
C
|
A:SER10
|
4.5
|
18.8
|
1.0
|
C
|
A:ASP11
|
4.5
|
20.2
|
1.0
|
CB
|
A:ASP11
|
4.6
|
21.0
|
1.0
|
CB
|
A:THR12
|
4.6
|
19.7
|
1.0
|
C
|
A:ASN14
|
4.7
|
13.3
|
1.0
|
C
|
A:GLY13
|
4.7
|
16.7
|
1.0
|
CG
|
A:ASN14
|
4.7
|
17.3
|
1.0
|
CB
|
A:THR15
|
4.7
|
13.5
|
1.0
|
OD1
|
A:ASN14
|
4.7
|
19.1
|
1.0
|
CA
|
A:GLY13
|
4.9
|
16.5
|
1.0
|
CA
|
A:THR15
|
5.0
|
14.4
|
1.0
|
|
Phosphorus binding site 2 out
of 2 in 1ag9
Go back to
Phosphorus Binding Sites List in 1ag9
Phosphorus binding site 2 out
of 2 in the Flavodoxins That Are Required For Enzyme Activation: the Structure of Oxidized Flavodoxin From Escherichia Coli at 1.8 Angstroms Resolution.
 Mono view
 Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 2 of Flavodoxins That Are Required For Enzyme Activation: the Structure of Oxidized Flavodoxin From Escherichia Coli at 1.8 Angstroms Resolution. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:P177
b:15.2
occ:1.00
|
P
|
B:FMN177
|
0.0
|
15.2
|
1.0
|
O3P
|
B:FMN177
|
1.4
|
13.0
|
1.0
|
O1P
|
B:FMN177
|
1.4
|
15.4
|
1.0
|
O2P
|
B:FMN177
|
1.5
|
16.1
|
1.0
|
O5'
|
B:FMN177
|
1.5
|
13.3
|
1.0
|
C5'
|
B:FMN177
|
2.5
|
16.0
|
1.0
|
OG
|
B:SER10
|
3.5
|
11.0
|
1.0
|
N
|
B:THR12
|
3.7
|
14.3
|
1.0
|
OG1
|
B:THR12
|
3.7
|
19.1
|
1.0
|
N
|
B:ASP11
|
3.7
|
12.8
|
1.0
|
N
|
B:ASN14
|
3.8
|
16.5
|
1.0
|
C4'
|
B:FMN177
|
3.8
|
17.0
|
1.0
|
CB
|
B:PRO55
|
3.9
|
13.0
|
1.0
|
CG
|
B:PRO55
|
3.9
|
13.0
|
1.0
|
N
|
B:THR15
|
3.9
|
14.2
|
1.0
|
OG1
|
B:THR15
|
3.9
|
12.5
|
1.0
|
NE1
|
B:TRP57
|
4.0
|
15.4
|
1.0
|
CB
|
B:ASN14
|
4.0
|
16.1
|
1.0
|
N
|
B:GLY13
|
4.1
|
16.0
|
1.0
|
CZ2
|
B:TRP57
|
4.2
|
12.6
|
1.0
|
CA
|
B:SER10
|
4.2
|
10.8
|
1.0
|
O4'
|
B:FMN177
|
4.3
|
17.3
|
1.0
|
CA
|
B:ASN14
|
4.3
|
16.2
|
1.0
|
CB
|
B:SER10
|
4.3
|
10.4
|
1.0
|
CA
|
B:THR12
|
4.4
|
15.8
|
1.0
|
C
|
B:SER10
|
4.5
|
12.9
|
1.0
|
CE2
|
B:TRP57
|
4.5
|
12.8
|
1.0
|
C
|
B:THR12
|
4.5
|
17.3
|
1.0
|
CB
|
B:THR15
|
4.6
|
12.6
|
1.0
|
CA
|
B:ASP11
|
4.6
|
13.3
|
1.0
|
CG
|
B:ASN14
|
4.6
|
16.9
|
1.0
|
C
|
B:ASN14
|
4.6
|
16.2
|
1.0
|
C
|
B:ASP11
|
4.6
|
13.5
|
1.0
|
OD1
|
B:ASN14
|
4.7
|
17.1
|
1.0
|
CB
|
B:THR12
|
4.7
|
16.6
|
1.0
|
C
|
B:GLY13
|
4.7
|
14.8
|
1.0
|
CB
|
B:ASP11
|
4.9
|
13.5
|
1.0
|
CA
|
B:THR15
|
4.9
|
13.0
|
1.0
|
CA
|
B:GLY13
|
4.9
|
15.4
|
1.0
|
|
Reference:
D.M.Hoover,
M.L.Ludwig.
A Flavodoxin That Is Required For Enzyme Activation: the Structure of Oxidized Flavodoxin From Escherichia Coli at 1.8 A Resolution. Protein Sci. V. 6 2525 1997.
ISSN: ISSN 0961-8368
PubMed: 9416602
Page generated: Fri Sep 25 12:50:47 2020
|