Phosphorus in PDB 1adc: Crystallographic Studies of Isosteric Nad Analogues Bound to Alcohol Dehydrogenase: Specificity and Substrate Binding in Two Ternary Complexes

Enzymatic activity of Crystallographic Studies of Isosteric Nad Analogues Bound to Alcohol Dehydrogenase: Specificity and Substrate Binding in Two Ternary Complexes

All present enzymatic activity of Crystallographic Studies of Isosteric Nad Analogues Bound to Alcohol Dehydrogenase: Specificity and Substrate Binding in Two Ternary Complexes:
1.1.1.1;

Protein crystallography data

The structure of Crystallographic Studies of Isosteric Nad Analogues Bound to Alcohol Dehydrogenase: Specificity and Substrate Binding in Two Ternary Complexes, PDB code: 1adc was solved by H.Li, W.A.Hallows, J.S.Punzi, K.W.Pankiewicz, K.A.Watanabe, B.M.Goldstein, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) N/A / 2.70
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 51.900, 44.800, 93.000, 103.10, 87.80, 70.40
R / Rfree (%) 17 / n/a

Phosphorus Binding Sites:

The binding sites of Phosphorus atom in the Crystallographic Studies of Isosteric Nad Analogues Bound to Alcohol Dehydrogenase: Specificity and Substrate Binding in Two Ternary Complexes (pdb code 1adc). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 4 binding sites of Phosphorus where determined in the Crystallographic Studies of Isosteric Nad Analogues Bound to Alcohol Dehydrogenase: Specificity and Substrate Binding in Two Ternary Complexes, PDB code: 1adc:
Jump to Phosphorus binding site number: 1; 2; 3; 4;

Phosphorus binding site 1 out of 4 in 1adc

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Phosphorus binding site 1 out of 4 in the Crystallographic Studies of Isosteric Nad Analogues Bound to Alcohol Dehydrogenase: Specificity and Substrate Binding in Two Ternary Complexes


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Crystallographic Studies of Isosteric Nad Analogues Bound to Alcohol Dehydrogenase: Specificity and Substrate Binding in Two Ternary Complexes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P377

b:10.2
occ:1.00
 PA A:PAD377 0.0 10.2 1.0
O2A A:PAD377 1.5 11.9 1.0
O1A A:PAD377 1.5 2.0 1.0
O3 A:PAD377 1.6 2.0 1.0
O5B A:PAD377 1.6 21.0 1.0
C5B A:PAD377 2.7 18.8 1.0
PN A:PAD377 2.8 10.3 1.0
O2N A:PAD377 3.2 13.4 1.0
HH11 A:ARG47 3.3 15.0 1.0
O1N A:PAD377 3.7 14.9 1.0
CD A:ARG47 3.8 2.0 1.0
C4B A:PAD377 3.9 11.9 1.0
H A:GLY202 4.0 15.0 1.0
O5D A:PAD377 4.0 15.7 1.0
C3B A:PAD377 4.1 8.9 1.0
CA A:GLY201 4.2 3.8 1.0
NH1 A:ARG47 4.3 10.8 1.0
CB A:ARG47 4.3 2.0 1.0
C5D A:PAD377 4.4 8.7 1.0
CG A:ARG47 4.5 2.0 1.0
HH12 A:ARG369 4.7 15.0 1.0
N A:GLY202 4.8 3.8 1.0
H A:GLY201 4.8 15.0 1.0
O3B A:PAD377 4.8 12.1 1.0
NE A:ARG47 4.9 2.0 1.0
HH12 A:ARG47 4.9 15.0 1.0
N A:GLY201 4.9 10.3 1.0
C A:GLY201 5.0 5.7 1.0

Phosphorus binding site 2 out of 4 in 1adc

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Phosphorus binding site 2 out of 4 in the Crystallographic Studies of Isosteric Nad Analogues Bound to Alcohol Dehydrogenase: Specificity and Substrate Binding in Two Ternary Complexes


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Crystallographic Studies of Isosteric Nad Analogues Bound to Alcohol Dehydrogenase: Specificity and Substrate Binding in Two Ternary Complexes within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P377

b:10.3
occ:1.00
 PN A:PAD377 0.0 10.3 1.0
O1N A:PAD377 1.5 14.9 1.0
O2N A:PAD377 1.5 13.4 1.0
O3 A:PAD377 1.6 2.0 1.0
O5D A:PAD377 1.6 15.7 1.0
C5D A:PAD377 2.7 8.7 1.0
PA A:PAD377 2.8 10.2 1.0
O2A A:PAD377 3.1 11.9 1.0
O5B A:PAD377 3.2 21.0 1.0
H A:VAL203 3.4 15.0 1.0
HH12 A:ARG369 3.5 15.0 1.0
H A:ARG47 3.5 15.0 1.0
CB A:ARG47 3.6 2.0 1.0
CG2 A:VAL203 3.6 14.4 1.0
C4D A:PAD377 3.9 4.8 1.0
H A:GLY202 4.0 15.0 1.0
HH22 A:ARG369 4.1 15.0 1.0
O1A A:PAD377 4.1 2.0 1.0
C3D A:PAD377 4.2 4.2 1.0
N A:VAL203 4.3 11.0 1.0
C5B A:PAD377 4.3 18.8 1.0
N A:ARG47 4.4 6.3 1.0
CB A:VAL203 4.4 11.5 1.0
N A:GLY202 4.5 3.8 1.0
NH1 A:ARG369 4.5 2.5 1.0
CG A:ARG47 4.5 2.0 1.0
O4D A:PAD377 4.6 2.0 1.0
CA A:ARG47 4.6 3.0 1.0
CD A:ARG47 4.7 2.0 1.0
C2D A:PAD377 4.7 3.2 1.0
H A:GLY204 4.8 15.0 1.0
NH2 A:ARG369 4.9 4.4 1.0

Phosphorus binding site 3 out of 4 in 1adc

Go back to Phosphorus Binding Sites List in 1adc
Phosphorus binding site 3 out of 4 in the Crystallographic Studies of Isosteric Nad Analogues Bound to Alcohol Dehydrogenase: Specificity and Substrate Binding in Two Ternary Complexes


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Crystallographic Studies of Isosteric Nad Analogues Bound to Alcohol Dehydrogenase: Specificity and Substrate Binding in Two Ternary Complexes within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P377

b:16.3
occ:1.00
 PA B:PAD377 0.0 16.3 1.0
O1A B:PAD377 1.5 4.1 1.0
O2A B:PAD377 1.5 9.2 1.0
O5B B:PAD377 1.6 15.9 1.0
O3 B:PAD377 1.6 11.1 1.0
C5B B:PAD377 2.7 12.7 1.0
PN B:PAD377 3.0 10.6 1.0
HH11 B:ARG47 3.1 15.0 1.0
O2N B:PAD377 3.4 9.2 1.0
CD B:ARG47 3.7 2.0 1.0
O1N B:PAD377 3.8 16.2 1.0
C4B B:PAD377 3.9 10.5 1.0
O5D B:PAD377 4.0 13.2 1.0
NH1 B:ARG47 4.1 4.5 1.0
CB B:ARG47 4.2 9.8 1.0
H B:GLY202 4.2 15.0 1.0
CD2 B:LEU362 4.2 3.9 1.0
CG B:ARG47 4.2 6.9 1.0
C5D B:PAD377 4.2 8.3 1.0
CA B:GLY201 4.2 5.2 1.0
C3B B:PAD377 4.3 14.2 1.0
HH12 B:ARG47 4.6 15.0 1.0
HZ1 B:LYS228 4.7 15.0 1.0
NE B:ARG47 4.7 2.0 1.0
HH12 B:ARG369 4.8 15.0 1.0
CZ B:ARG47 4.9 2.0 1.0
HZ2 B:LYS228 4.9 15.0 1.0
H B:ARG47 4.9 15.0 1.0
N B:GLY202 5.0 2.0 1.0
O4B B:PAD377 5.0 8.9 1.0

Phosphorus binding site 4 out of 4 in 1adc

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Phosphorus binding site 4 out of 4 in the Crystallographic Studies of Isosteric Nad Analogues Bound to Alcohol Dehydrogenase: Specificity and Substrate Binding in Two Ternary Complexes


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Crystallographic Studies of Isosteric Nad Analogues Bound to Alcohol Dehydrogenase: Specificity and Substrate Binding in Two Ternary Complexes within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P377

b:10.6
occ:1.00
 PN B:PAD377 0.0 10.6 1.0
O2N B:PAD377 1.5 9.2 1.0
O1N B:PAD377 1.5 16.2 1.0
O3 B:PAD377 1.6 11.1 1.0
O5D B:PAD377 1.6 13.2 1.0
C5D B:PAD377 2.8 8.3 1.0
PA B:PAD377 3.0 16.3 1.0
HH12 B:ARG369 3.3 15.0 1.0
O2A B:PAD377 3.3 9.2 1.0
H B:ARG47 3.4 15.0 1.0
CG2 B:VAL203 3.5 16.9 1.0
H B:VAL203 3.5 15.0 1.0
CB B:ARG47 3.6 9.8 1.0
O5B B:PAD377 3.6 15.9 1.0
H B:GLY202 3.8 15.0 1.0
HH22 B:ARG369 4.0 15.0 1.0
O1A B:PAD377 4.1 4.1 1.0
C4D B:PAD377 4.1 3.5 1.0
NH1 B:ARG369 4.2 12.0 1.0
N B:ARG47 4.3 11.2 1.0
N B:GLY202 4.4 2.0 1.0
N B:VAL203 4.5 7.1 1.0
CG B:ARG47 4.5 6.9 1.0
CA B:ARG47 4.6 6.5 1.0
C3D B:PAD377 4.6 2.0 1.0
C5B B:PAD377 4.6 12.7 1.0
HH11 B:ARG369 4.7 15.0 1.0
CB B:VAL203 4.7 13.4 1.0
O4D B:PAD377 4.8 8.6 1.0
CG1 B:VAL203 4.8 18.5 1.0
NH2 B:ARG369 4.8 17.7 1.0
H B:GLY204 4.8 15.0 1.0
CA B:GLY201 4.8 5.2 1.0
CD B:ARG47 4.9 2.0 1.0
C2D B:PAD377 4.9 6.1 1.0
CZ B:ARG369 5.0 13.0 1.0

Reference:

H.Li, W.H.Hallows, J.S.Punzi, K.W.Pankiewicz, K.A.Watanabe, B.M.Goldstein. Crystallographic Studies of Isosteric Nad Analogues Bound to Alcohol Dehydrogenase: Specificity and Substrate Binding in Two Ternary Complexes. Biochemistry V. 33 11734 1994.
ISSN: ISSN 0006-2960
PubMed: 7918390
DOI: 10.1021/BI00205A009
Page generated: Fri Sep 25 12:45:42 2020

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