Phosphorus in PDB 1a9n: Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna

Protein crystallography data

The structure of Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna, PDB code: 1a9n was solved by S.R.Price, P.R.Evans, K.Nagai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 2.38
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 98.370, 128.240, 66.650, 90.00, 90.00, 90.00
R / Rfree (%) 28.2 / 32.8

Phosphorus Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 46;

Binding sites:

The binding sites of Phosphorus atom in the Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna (pdb code 1a9n). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 46 binding sites of Phosphorus where determined in the Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna, PDB code: 1a9n:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Phosphorus binding site 1 out of 46 in 1a9n

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Phosphorus binding site 1 out of 46 in the Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:P1

b:73.8
occ:1.00
P Q:C1 0.0 73.8 1.0
OP1 Q:C1 1.5 77.2 1.0
OP2 Q:C1 1.5 74.3 1.0
O5' Q:C1 1.6 71.7 1.0
O3' Q:C0 1.6 73.5 1.0
C3' Q:C0 2.6 73.5 1.0
C5' Q:C1 2.6 67.5 1.0
C2' Q:C0 3.3 72.7 1.0
CE B:LYS22 3.6 68.4 1.0
O2' Q:C0 3.6 73.0 1.0
C4' Q:C1 3.9 65.8 1.0
C4' Q:C0 3.9 74.5 1.0
NZ B:LYS22 4.1 71.7 1.0
C3' Q:C1 4.2 64.6 1.0
C6 Q:C1 4.3 63.8 1.0
O4' Q:C1 4.4 62.7 1.0
C5' Q:C0 4.6 75.8 1.0
CD B:LYS22 4.7 63.3 1.0
C1' Q:C0 4.7 70.5 1.0
O3' Q:C1 4.8 63.6 1.0
C5 Q:C1 4.8 63.1 1.0
O5' Q:C0 4.9 77.2 1.0
O4' Q:C0 4.9 74.4 1.0

Phosphorus binding site 2 out of 46 in 1a9n

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Phosphorus binding site 2 out of 46 in the Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:P2

b:68.0
occ:1.00
P Q:U2 0.0 68.0 1.0
OP2 Q:U2 1.5 62.5 1.0
OP1 Q:U2 1.5 71.3 1.0
O3' Q:C1 1.6 63.6 1.0
O5' Q:U2 1.6 67.9 1.0
C5' Q:U2 2.6 67.6 1.0
C3' Q:C1 2.7 64.6 1.0
C2' Q:C1 3.4 64.5 1.0
O2' Q:C1 3.5 68.5 1.0
C4' Q:U2 3.9 68.4 1.0
C4' Q:C1 3.9 65.8 1.0
NZ A:LYS149 4.0 60.2 1.0
C5' Q:C1 4.6 67.5 1.0
C6 Q:U2 4.6 62.2 1.0
CE A:LYS149 4.7 58.3 1.0
C1' Q:C1 4.8 64.2 1.0
O5' Q:C1 4.8 71.7 1.0
O4' Q:U2 4.8 68.9 1.0
C3' Q:U2 4.9 70.0 1.0

Phosphorus binding site 3 out of 46 in 1a9n

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Phosphorus binding site 3 out of 46 in the Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:P3

b:73.5
occ:1.00
P Q:G3 0.0 73.5 1.0
OP2 Q:G3 1.4 64.6 1.0
OP1 Q:G3 1.5 78.0 1.0
O5' Q:G3 1.6 73.3 1.0
O3' Q:U2 1.6 71.2 1.0
C5' Q:G3 2.5 72.7 1.0
C3' Q:U2 2.5 70.0 1.0
C2' Q:U2 3.6 68.5 1.0
C4' Q:U2 3.7 68.4 1.0
C4' Q:G3 3.8 69.9 1.0
O2' Q:U2 4.0 72.2 1.0
C5' Q:U2 4.1 67.6 1.0
O4' Q:G3 4.4 68.8 1.0
O5' Q:U2 4.7 67.9 1.0
C1' Q:U2 4.8 67.3 1.0
O4' Q:U2 4.8 68.9 1.0
C8 Q:G3 5.0 68.4 1.0
C3' Q:G3 5.0 71.8 1.0
OP2 Q:G4 5.0 73.2 1.0

Phosphorus binding site 4 out of 46 in 1a9n

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Phosphorus binding site 4 out of 46 in the Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:P4

b:71.8
occ:1.00
P Q:G4 0.0 71.8 1.0
OP2 Q:G4 1.5 73.2 1.0
OP1 Q:G4 1.5 75.2 1.0
O5' Q:G4 1.6 64.5 1.0
O3' Q:G3 1.6 71.6 1.0
C5' Q:G4 2.6 68.3 1.0
C3' Q:G3 2.6 71.8 1.0
C4' Q:G3 3.6 69.9 1.0
C2' Q:G3 3.7 73.4 1.0
C4' Q:G4 3.8 66.7 1.0
C5' Q:G3 4.0 72.7 1.0
O4' Q:G4 4.0 66.6 1.0
O2' Q:G3 4.2 79.6 1.0
O5' Q:G3 4.6 73.3 1.0
C3' Q:G4 4.7 65.7 1.0
C8 Q:G4 4.7 67.7 1.0
C1' Q:G3 4.9 71.7 1.0
O4' Q:G3 4.9 68.8 1.0

Phosphorus binding site 5 out of 46 in 1a9n

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Phosphorus binding site 5 out of 46 in the Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:P5

b:65.7
occ:1.00
P Q:U5 0.0 65.7 1.0
OP2 Q:U5 1.5 62.0 1.0
OP1 Q:U5 1.5 68.2 1.0
O5' Q:U5 1.6 66.3 1.0
O3' Q:G4 1.6 64.5 1.0
C5' Q:U5 2.6 67.0 1.0
C3' Q:G4 2.7 65.7 1.0
C2' Q:G4 3.6 68.6 1.0
C4' Q:U5 3.9 68.3 1.0
C4' Q:G4 3.9 66.7 1.0
O2' Q:G4 4.0 74.0 1.0
C6 Q:U5 4.1 67.7 1.0
O4' Q:U5 4.3 72.2 1.0
C5' Q:G4 4.4 68.3 1.0
C3' Q:U5 4.5 69.6 1.0
C5 Q:U5 4.6 69.1 1.0
C1' Q:G4 4.9 67.6 1.0
O5' Q:G4 4.9 64.5 1.0

Phosphorus binding site 6 out of 46 in 1a9n

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Phosphorus binding site 6 out of 46 in the Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:P6

b:66.9
occ:1.00
P Q:A6 0.0 66.9 1.0
OP2 Q:A6 1.5 71.2 1.0
OP1 Q:A6 1.5 72.5 1.0
O5' Q:A6 1.6 68.3 1.0
O3' Q:U5 1.6 68.7 1.0
C5' Q:A6 2.5 65.7 1.0
C3' Q:U5 2.6 69.6 1.0
C2' Q:U5 3.5 70.8 1.0
C4' Q:A6 3.8 63.4 1.0
O2' Q:U5 3.8 73.0 1.0
C4' Q:U5 3.9 68.3 1.0
O4' Q:A6 4.1 64.3 1.0
C5' Q:U5 4.5 67.0 1.0
C3' Q:A6 4.5 62.9 1.0
O5' Q:U5 4.7 66.3 1.0
C8 Q:A6 4.7 62.3 1.0
C1' Q:U5 4.8 69.2 1.0
OP2 Q:U7 4.9 63.1 1.0
O4' Q:U5 4.9 72.2 1.0

Phosphorus binding site 7 out of 46 in 1a9n

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Phosphorus binding site 7 out of 46 in the Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 7 of Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:P7

b:60.7
occ:1.00
P Q:U7 0.0 60.7 1.0
OP2 Q:U7 1.5 63.1 1.0
OP1 Q:U7 1.5 62.8 1.0
O3' Q:A6 1.6 60.3 1.0
O5' Q:U7 1.6 58.7 1.0
C5' Q:U7 2.6 63.2 1.0
C3' Q:A6 2.6 62.9 1.0
C2' Q:A6 3.7 63.2 1.0
C4' Q:A6 3.8 63.4 1.0
C4' Q:U7 3.8 64.5 1.0
C5' Q:A6 4.1 65.7 1.0
O4' Q:U7 4.2 64.2 1.0
O2' Q:A6 4.2 64.2 1.0
C3' Q:U7 4.3 64.4 1.0
C6 Q:U7 4.4 58.1 1.0
O5' Q:A6 4.5 68.3 1.0
OP2 Q:U8 4.7 62.2 1.0
C1' Q:A6 4.9 62.0 1.0
O4' Q:A6 4.9 64.3 1.0

Phosphorus binding site 8 out of 46 in 1a9n

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Phosphorus binding site 8 out of 46 in the Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 8 of Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:P8

b:67.1
occ:1.00
P Q:U8 0.0 67.1 1.0
OP2 Q:U8 1.5 62.2 1.0
OP1 Q:U8 1.5 67.1 1.0
O5' Q:U8 1.6 68.8 1.0
O3' Q:U7 1.6 66.5 1.0
C3' Q:U7 2.7 64.4 1.0
C5' Q:U8 2.7 67.2 1.0
C2' Q:U7 3.6 63.3 1.0
C4' Q:U7 3.9 64.5 1.0
C4' Q:U8 3.9 63.0 1.0
O2' Q:U7 3.9 62.1 1.0
O5' Q:U7 4.0 58.7 1.0
C3' Q:U8 4.2 60.4 1.0
C5' Q:U7 4.3 63.2 1.0
C2' Q:U8 4.3 59.3 1.0
O4' Q:U8 4.5 63.4 1.0
C6 Q:U8 4.7 57.2 1.0
C1' Q:U7 4.9 62.6 1.0
C1' Q:U8 5.0 60.0 1.0
O4' Q:U7 5.0 64.2 1.0

Phosphorus binding site 9 out of 46 in 1a9n

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Phosphorus binding site 9 out of 46 in the Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 9 of Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:P9

b:58.2
occ:1.00
P Q:G9 0.0 58.2 1.0
OP1 Q:G9 1.5 64.2 1.0
OP2 Q:G9 1.5 61.0 1.0
O5' Q:G9 1.6 59.3 1.0
O3' Q:U8 1.6 60.9 1.0
C5' Q:G9 2.6 53.0 1.0
C3' Q:U8 2.7 60.4 1.0
C4' Q:U8 3.3 63.0 1.0
C4' Q:G9 3.9 53.5 1.0
C2' Q:U8 3.9 59.3 1.0
O2' Q:U8 4.1 63.1 1.0
O4' Q:G9 4.1 52.2 1.0
O4' Q:U8 4.3 63.4 1.0
C5' Q:U8 4.4 67.2 1.0
C1' Q:U8 4.5 60.0 1.0
C3' Q:G9 4.6 52.4 1.0
C8 Q:G9 4.9 49.3 1.0

Phosphorus binding site 10 out of 46 in 1a9n

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Phosphorus binding site 10 out of 46 in the Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 10 of Crystal Structure of the Spliceosomal U2B''-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
Q:P10

b:47.7
occ:1.00
P Q:C10 0.0 47.7 1.0
OP2 Q:C10 1.5 54.7 1.0
OP1 Q:C10 1.5 53.0 1.0
O5' Q:C10 1.6 52.0 1.0
O3' Q:G9 1.6 54.2 1.0
C5' Q:C10 2.6 51.9 1.0
C3' Q:G9 2.6 52.4 1.0
C2' Q:G9 3.5 54.4 1.0
C4' Q:C10 3.7 48.3 1.0
O2' Q:G9 3.8 52.0 1.0
C4' Q:G9 3.9 53.5 1.0
C3' Q:C10 4.0 49.7 1.0
C2' Q:C10 4.1 46.6 1.0
C5' Q:G9 4.3 53.0 1.0
C6 Q:C10 4.5 41.4 1.0
O4' Q:C10 4.7 49.9 1.0
C1' Q:G9 4.9 53.0 1.0
O5' Q:G9 4.9 59.3 1.0
C1' Q:C10 4.9 45.5 1.0
O4' Q:G9 5.0 52.2 1.0

Reference:

S.R.Price, P.R.Evans, K.Nagai. Crystal Structure of the Spliceosomal U2B"-U2A' Protein Complex Bound to A Fragment of U2 Small Nuclear Rna. Nature V. 394 645 1998.
ISSN: ISSN 0028-0836
PubMed: 9716128
DOI: 10.1038/29234
Page generated: Fri Sep 25 12:38:45 2020

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