Phosphorus in PDB 1a9j: Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure
Phosphorus Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Binding sites:
The binding sites of Phosphorus atom in the Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure
(pdb code 1a9j). This binding sites where shown within
5.0 Angstroms radius around Phosphorus atom.
In total 20 binding sites of Phosphorus where determined in the
Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure, PDB code: 1a9j:
Jump to Phosphorus binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Phosphorus binding site 1 out
of 20 in 1a9j
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Phosphorus Binding Sites List in 1a9j
Phosphorus binding site 1 out
of 20 in the Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 1 of Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P2
b:0.0
occ:1.00
|
P
|
A:DG2
|
0.0
|
0.0
|
1.0
|
OP1
|
A:DG2
|
1.2
|
0.0
|
1.0
|
OP2
|
A:DG2
|
1.3
|
0.0
|
1.0
|
O3'
|
A:DC1
|
1.5
|
0.0
|
1.0
|
O5'
|
A:DG2
|
1.5
|
0.0
|
1.0
|
C3'
|
A:DC1
|
2.5
|
0.0
|
1.0
|
C5'
|
A:DG2
|
2.5
|
0.0
|
1.0
|
H3'
|
A:DC1
|
2.7
|
0.0
|
1.0
|
H5''
|
A:DG2
|
2.7
|
0.0
|
1.0
|
H5'
|
A:DG2
|
2.8
|
0.0
|
1.0
|
H2''
|
A:DC1
|
2.9
|
0.0
|
1.0
|
C2'
|
A:DC1
|
3.2
|
0.0
|
1.0
|
H1'
|
A:DC1
|
3.6
|
0.0
|
1.0
|
H4'
|
A:DC1
|
3.7
|
0.0
|
1.0
|
C4'
|
A:DC1
|
3.7
|
0.0
|
1.0
|
C4'
|
A:DG2
|
3.8
|
0.0
|
1.0
|
C1'
|
A:DC1
|
4.0
|
0.0
|
1.0
|
H2'
|
A:DC1
|
4.0
|
0.0
|
1.0
|
H4'
|
A:DG2
|
4.2
|
0.0
|
1.0
|
HO5'
|
A:DC1
|
4.2
|
0.0
|
1.0
|
O4'
|
A:DG2
|
4.3
|
0.0
|
1.0
|
O4'
|
A:DC1
|
4.3
|
0.0
|
1.0
|
C5'
|
A:DC1
|
4.7
|
0.0
|
1.0
|
O5'
|
A:DC1
|
4.8
|
0.0
|
1.0
|
H3'
|
A:DG2
|
4.9
|
0.0
|
1.0
|
C3'
|
A:DG2
|
5.0
|
0.0
|
1.0
|
H2'
|
A:DG2
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 2 out
of 20 in 1a9j
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Phosphorus Binding Sites List in 1a9j
Phosphorus binding site 2 out
of 20 in the Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 2 of Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P3
b:0.0
occ:1.00
|
P
|
A:DC3
|
0.0
|
0.0
|
1.0
|
OP2
|
A:DC3
|
1.4
|
0.0
|
1.0
|
OP1
|
A:DC3
|
1.4
|
0.0
|
1.0
|
O5'
|
A:DC3
|
1.5
|
0.0
|
1.0
|
O3'
|
A:DG2
|
1.6
|
0.0
|
1.0
|
C5'
|
A:DC3
|
2.6
|
0.0
|
1.0
|
C3'
|
A:DG2
|
2.7
|
0.0
|
1.0
|
H5''
|
A:DC3
|
2.7
|
0.0
|
1.0
|
H2''
|
A:DG2
|
2.9
|
0.0
|
1.0
|
H5'
|
A:DC3
|
3.0
|
0.0
|
1.0
|
H3'
|
A:DG2
|
3.0
|
0.0
|
1.0
|
C2'
|
A:DG2
|
3.2
|
0.0
|
1.0
|
H6
|
A:DC3
|
3.3
|
0.0
|
1.0
|
H2'
|
A:DC3
|
3.4
|
0.0
|
1.0
|
H1'
|
A:DG2
|
3.4
|
0.0
|
1.0
|
C1'
|
A:DG2
|
3.8
|
0.0
|
1.0
|
C4'
|
A:DC3
|
3.8
|
0.0
|
1.0
|
H3'
|
A:DC3
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DG2
|
3.9
|
0.0
|
1.0
|
H4'
|
A:DG2
|
3.9
|
0.0
|
1.0
|
H2'
|
A:DG2
|
4.1
|
0.0
|
1.0
|
C3'
|
A:DC3
|
4.2
|
0.0
|
1.0
|
C2'
|
A:DC3
|
4.3
|
0.0
|
1.0
|
C6
|
A:DC3
|
4.3
|
0.0
|
1.0
|
O4'
|
A:DG2
|
4.5
|
0.0
|
1.0
|
O4'
|
A:DC3
|
4.5
|
0.0
|
1.0
|
H4'
|
A:DC3
|
4.6
|
0.0
|
1.0
|
C1'
|
A:DC3
|
4.9
|
0.0
|
1.0
|
H5
|
A:DC3
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 3 out
of 20 in 1a9j
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Phosphorus Binding Sites List in 1a9j
Phosphorus binding site 3 out
of 20 in the Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 3 of Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P4
b:0.0
occ:1.00
|
P
|
A:DG4
|
0.0
|
0.0
|
1.0
|
OP2
|
A:DG4
|
1.4
|
0.0
|
1.0
|
OP1
|
A:DG4
|
1.4
|
0.0
|
1.0
|
O3'
|
A:DC3
|
1.6
|
0.0
|
1.0
|
O5'
|
A:DG4
|
1.6
|
0.0
|
1.0
|
C5'
|
A:DG4
|
2.6
|
0.0
|
1.0
|
C3'
|
A:DC3
|
2.7
|
0.0
|
1.0
|
H5''
|
A:DG4
|
2.8
|
0.0
|
1.0
|
H3'
|
A:DC3
|
2.9
|
0.0
|
1.0
|
H5'
|
A:DG4
|
3.0
|
0.0
|
1.0
|
H2''
|
A:DC3
|
3.1
|
0.0
|
1.0
|
C2'
|
A:DC3
|
3.4
|
0.0
|
1.0
|
H1'
|
A:DC3
|
3.7
|
0.0
|
1.0
|
H4'
|
A:DC3
|
3.8
|
0.0
|
1.0
|
C4'
|
A:DC3
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DG4
|
3.9
|
0.0
|
1.0
|
C1'
|
A:DC3
|
4.1
|
0.0
|
1.0
|
O4'
|
A:DG4
|
4.2
|
0.0
|
1.0
|
H2'
|
A:DC3
|
4.3
|
0.0
|
1.0
|
H4'
|
A:DG4
|
4.3
|
0.0
|
1.0
|
O4'
|
A:DC3
|
4.4
|
0.0
|
1.0
|
H5''
|
A:DC3
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 4 out
of 20 in 1a9j
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Phosphorus Binding Sites List in 1a9j
Phosphorus binding site 4 out
of 20 in the Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 4 of Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P5
b:0.0
occ:1.00
|
P
|
A:DA5
|
0.0
|
0.0
|
1.0
|
OP1
|
A:DA5
|
1.4
|
0.0
|
1.0
|
OP2
|
A:DA5
|
1.4
|
0.0
|
1.0
|
O5'
|
A:DA5
|
1.5
|
0.0
|
1.0
|
O3'
|
A:DG4
|
1.6
|
0.0
|
1.0
|
C5'
|
A:DA5
|
2.6
|
0.0
|
1.0
|
C3'
|
A:DG4
|
2.6
|
0.0
|
1.0
|
H5'
|
A:DA5
|
2.7
|
0.0
|
1.0
|
H8
|
A:DA5
|
2.7
|
0.0
|
1.0
|
H3'
|
A:DG4
|
2.7
|
0.0
|
1.0
|
H5''
|
A:DA5
|
3.0
|
0.0
|
1.0
|
H2''
|
A:DG4
|
3.2
|
0.0
|
1.0
|
C2'
|
A:DG4
|
3.4
|
0.0
|
1.0
|
C8
|
A:DA5
|
3.7
|
0.0
|
1.0
|
H2'
|
A:DA5
|
3.7
|
0.0
|
1.0
|
C4'
|
A:DA5
|
3.9
|
0.0
|
1.0
|
H4'
|
A:DG4
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DG4
|
3.9
|
0.0
|
1.0
|
H1'
|
A:DG4
|
4.0
|
0.0
|
1.0
|
O4'
|
A:DA5
|
4.1
|
0.0
|
1.0
|
H2'
|
A:DG4
|
4.2
|
0.0
|
1.0
|
C1'
|
A:DG4
|
4.3
|
0.0
|
1.0
|
H3'
|
A:DA5
|
4.5
|
0.0
|
1.0
|
C2'
|
A:DA5
|
4.5
|
0.0
|
1.0
|
N7
|
A:DA5
|
4.6
|
0.0
|
1.0
|
N9
|
A:DA5
|
4.6
|
0.0
|
1.0
|
C3'
|
A:DA5
|
4.6
|
0.0
|
1.0
|
H4'
|
A:DA5
|
4.6
|
0.0
|
1.0
|
C1'
|
A:DA5
|
4.7
|
0.0
|
1.0
|
O4'
|
A:DG4
|
4.7
|
0.0
|
1.0
|
H5'
|
A:DG4
|
4.8
|
0.0
|
1.0
|
C5'
|
A:DG4
|
4.9
|
0.0
|
1.0
|
|
Phosphorus binding site 5 out
of 20 in 1a9j
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Phosphorus Binding Sites List in 1a9j
Phosphorus binding site 5 out
of 20 in the Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 5 of Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P6
b:0.0
occ:1.00
|
P
|
A:AAB6
|
0.0
|
0.0
|
1.0
|
O2P
|
A:AAB6
|
1.5
|
0.0
|
1.0
|
O1P
|
A:AAB6
|
1.5
|
0.0
|
1.0
|
O3'
|
A:DA5
|
1.6
|
0.0
|
1.0
|
O5'
|
A:AAB6
|
1.6
|
0.0
|
1.0
|
C3'
|
A:DA5
|
2.7
|
0.0
|
1.0
|
C5'
|
A:AAB6
|
2.7
|
0.0
|
1.0
|
H5'2
|
A:AAB6
|
2.8
|
0.0
|
1.0
|
H2''
|
A:DA5
|
3.0
|
0.0
|
1.0
|
H3'
|
A:DA5
|
3.0
|
0.0
|
1.0
|
H5'1
|
A:AAB6
|
3.1
|
0.0
|
1.0
|
H2'2
|
A:AAB6
|
3.2
|
0.0
|
1.0
|
C2'
|
A:DA5
|
3.3
|
0.0
|
1.0
|
H1'
|
A:DA5
|
3.6
|
0.0
|
1.0
|
H4'
|
A:DA5
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DA5
|
3.9
|
0.0
|
1.0
|
C4'
|
A:AAB6
|
3.9
|
0.0
|
1.0
|
C1'
|
A:DA5
|
4.0
|
0.0
|
1.0
|
H3'
|
A:AAB6
|
4.0
|
0.0
|
1.0
|
H2'
|
A:DA5
|
4.2
|
0.0
|
1.0
|
C2'
|
A:AAB6
|
4.2
|
0.0
|
1.0
|
C3'
|
A:AAB6
|
4.3
|
0.0
|
1.0
|
O4'
|
A:DA5
|
4.4
|
0.0
|
1.0
|
O4'
|
A:AAB6
|
4.4
|
0.0
|
1.0
|
H4'
|
A:AAB6
|
4.8
|
0.0
|
1.0
|
C1'
|
A:AAB6
|
4.9
|
0.0
|
1.0
|
H2'1
|
A:AAB6
|
4.9
|
0.0
|
1.0
|
O1'
|
A:AAB6
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 6 out
of 20 in 1a9j
Go back to
Phosphorus Binding Sites List in 1a9j
Phosphorus binding site 6 out
of 20 in the Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 6 of Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P7
b:0.0
occ:1.00
|
P
|
A:DA7
|
0.0
|
0.0
|
1.0
|
OP1
|
A:DA7
|
1.4
|
0.0
|
1.0
|
OP2
|
A:DA7
|
1.4
|
0.0
|
1.0
|
O5'
|
A:DA7
|
1.6
|
0.0
|
1.0
|
O3'
|
A:AAB6
|
1.6
|
0.0
|
1.0
|
C5'
|
A:DA7
|
2.6
|
0.0
|
1.0
|
C3'
|
A:AAB6
|
2.7
|
0.0
|
1.0
|
H5''
|
A:DA7
|
2.9
|
0.0
|
1.0
|
H5'
|
A:DA7
|
2.9
|
0.0
|
1.0
|
H2'1
|
A:AAB6
|
2.9
|
0.0
|
1.0
|
H3'
|
A:AAB6
|
3.0
|
0.0
|
1.0
|
C2'
|
A:AAB6
|
3.2
|
0.0
|
1.0
|
H1'
|
A:AAB6
|
3.5
|
0.0
|
1.0
|
C1'
|
A:AAB6
|
3.9
|
0.0
|
1.0
|
H2'
|
A:DA7
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DA7
|
4.0
|
0.0
|
1.0
|
C4'
|
A:AAB6
|
4.0
|
0.0
|
1.0
|
H4'
|
A:AAB6
|
4.1
|
0.0
|
1.0
|
H2'2
|
A:AAB6
|
4.2
|
0.0
|
1.0
|
H3'
|
A:DA7
|
4.2
|
0.0
|
1.0
|
O4'
|
A:DA7
|
4.5
|
0.0
|
1.0
|
O4'
|
A:AAB6
|
4.5
|
0.0
|
1.0
|
C3'
|
A:DA7
|
4.6
|
0.0
|
1.0
|
H8
|
A:DA7
|
4.7
|
0.0
|
1.0
|
C2'
|
A:DA7
|
4.7
|
0.0
|
1.0
|
H4'
|
A:DA7
|
4.7
|
0.0
|
1.0
|
|
Phosphorus binding site 7 out
of 20 in 1a9j
Go back to
Phosphorus Binding Sites List in 1a9j
Phosphorus binding site 7 out
of 20 in the Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 7 of Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P8
b:0.0
occ:1.00
|
P
|
A:DC8
|
0.0
|
0.0
|
1.0
|
OP1
|
A:DC8
|
1.4
|
0.0
|
1.0
|
OP2
|
A:DC8
|
1.4
|
0.0
|
1.0
|
O5'
|
A:DC8
|
1.5
|
0.0
|
1.0
|
O3'
|
A:DA7
|
1.6
|
0.0
|
1.0
|
C5'
|
A:DC8
|
2.5
|
0.0
|
1.0
|
H5'
|
A:DC8
|
2.7
|
0.0
|
1.0
|
C3'
|
A:DA7
|
2.7
|
0.0
|
1.0
|
H5''
|
A:DC8
|
2.8
|
0.0
|
1.0
|
H2''
|
A:DA7
|
2.8
|
0.0
|
1.0
|
H3'
|
A:DA7
|
3.0
|
0.0
|
1.0
|
C2'
|
A:DA7
|
3.2
|
0.0
|
1.0
|
H1'
|
A:DA7
|
3.5
|
0.0
|
1.0
|
C4'
|
A:DC8
|
3.8
|
0.0
|
1.0
|
C1'
|
A:DA7
|
3.9
|
0.0
|
1.0
|
H2'
|
A:DC8
|
3.9
|
0.0
|
1.0
|
H6
|
A:DC8
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DA7
|
3.9
|
0.0
|
1.0
|
H4'
|
A:DA7
|
4.0
|
0.0
|
1.0
|
H2'
|
A:DA7
|
4.1
|
0.0
|
1.0
|
O4'
|
A:DC8
|
4.1
|
0.0
|
1.0
|
H3'
|
A:DC8
|
4.2
|
0.0
|
1.0
|
C3'
|
A:DC8
|
4.5
|
0.0
|
1.0
|
O4'
|
A:DA7
|
4.5
|
0.0
|
1.0
|
H4'
|
A:DC8
|
4.5
|
0.0
|
1.0
|
C2'
|
A:DC8
|
4.6
|
0.0
|
1.0
|
C6
|
A:DC8
|
4.8
|
0.0
|
1.0
|
C1'
|
A:DC8
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 8 out
of 20 in 1a9j
Go back to
Phosphorus Binding Sites List in 1a9j
Phosphorus binding site 8 out
of 20 in the Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 8 of Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P9
b:0.0
occ:1.00
|
P
|
A:DG9
|
0.0
|
0.0
|
1.0
|
OP1
|
A:DG9
|
1.4
|
0.0
|
1.0
|
OP2
|
A:DG9
|
1.4
|
0.0
|
1.0
|
O3'
|
A:DC8
|
1.5
|
0.0
|
1.0
|
O5'
|
A:DG9
|
1.6
|
0.0
|
1.0
|
C5'
|
A:DG9
|
2.6
|
0.0
|
1.0
|
C3'
|
A:DC8
|
2.7
|
0.0
|
1.0
|
H5''
|
A:DG9
|
2.8
|
0.0
|
1.0
|
H5'
|
A:DG9
|
2.9
|
0.0
|
1.0
|
H2''
|
A:DC8
|
2.9
|
0.0
|
1.0
|
H3'
|
A:DC8
|
3.0
|
0.0
|
1.0
|
C2'
|
A:DC8
|
3.3
|
0.0
|
1.0
|
H1'
|
A:DC8
|
3.6
|
0.0
|
1.0
|
H2'
|
A:DG9
|
3.7
|
0.0
|
1.0
|
H4'
|
A:DC8
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DC8
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DG9
|
3.9
|
0.0
|
1.0
|
C1'
|
A:DC8
|
4.0
|
0.0
|
1.0
|
H3'
|
A:DG9
|
4.1
|
0.0
|
1.0
|
H2'
|
A:DC8
|
4.1
|
0.0
|
1.0
|
H8
|
A:DG9
|
4.1
|
0.0
|
1.0
|
O4'
|
A:DG9
|
4.4
|
0.0
|
1.0
|
C3'
|
A:DG9
|
4.5
|
0.0
|
1.0
|
C2'
|
A:DG9
|
4.6
|
0.0
|
1.0
|
O4'
|
A:DC8
|
4.6
|
0.0
|
1.0
|
H4'
|
A:DG9
|
4.7
|
0.0
|
1.0
|
H5''
|
A:DC8
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 9 out
of 20 in 1a9j
Go back to
Phosphorus Binding Sites List in 1a9j
Phosphorus binding site 9 out
of 20 in the Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 9 of Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P10
b:0.0
occ:1.00
|
P
|
A:DC10
|
0.0
|
0.0
|
1.0
|
OP1
|
A:DC10
|
1.4
|
0.0
|
1.0
|
OP2
|
A:DC10
|
1.4
|
0.0
|
1.0
|
O5'
|
A:DC10
|
1.6
|
0.0
|
1.0
|
O3'
|
A:DG9
|
1.6
|
0.0
|
1.0
|
C5'
|
A:DC10
|
2.6
|
0.0
|
1.0
|
C3'
|
A:DG9
|
2.7
|
0.0
|
1.0
|
H2''
|
A:DG9
|
2.8
|
0.0
|
1.0
|
H5''
|
A:DC10
|
2.8
|
0.0
|
1.0
|
H6
|
A:DC10
|
2.9
|
0.0
|
1.0
|
H5'
|
A:DC10
|
3.0
|
0.0
|
1.0
|
H3'
|
A:DG9
|
3.0
|
0.0
|
1.0
|
C2'
|
A:DG9
|
3.2
|
0.0
|
1.0
|
H1'
|
A:DG9
|
3.4
|
0.0
|
1.0
|
H2'
|
A:DC10
|
3.5
|
0.0
|
1.0
|
C1'
|
A:DG9
|
3.8
|
0.0
|
1.0
|
C4'
|
A:DC10
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DG9
|
4.0
|
0.0
|
1.0
|
C6
|
A:DC10
|
4.0
|
0.0
|
1.0
|
H4'
|
A:DG9
|
4.0
|
0.0
|
1.0
|
H2'
|
A:DG9
|
4.1
|
0.0
|
1.0
|
H3'
|
A:DC10
|
4.2
|
0.0
|
1.0
|
O4'
|
A:DC10
|
4.4
|
0.0
|
1.0
|
C2'
|
A:DC10
|
4.4
|
0.0
|
1.0
|
C3'
|
A:DC10
|
4.5
|
0.0
|
1.0
|
H5
|
A:DC10
|
4.5
|
0.0
|
1.0
|
O4'
|
A:DG9
|
4.5
|
0.0
|
1.0
|
C5
|
A:DC10
|
4.7
|
0.0
|
1.0
|
H4'
|
A:DC10
|
4.7
|
0.0
|
1.0
|
C1'
|
A:DC10
|
4.8
|
0.0
|
1.0
|
N1
|
A:DC10
|
4.9
|
0.0
|
1.0
|
|
Phosphorus binding site 10 out
of 20 in 1a9j
Go back to
Phosphorus Binding Sites List in 1a9j
Phosphorus binding site 10 out
of 20 in the Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 10 of Apyrimidinic Dna with Bound Water at the Damaged Site, Beta Form, uc(Nmr), 1 Structure within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P11
b:0.0
occ:1.00
|
P
|
A:DC11
|
0.0
|
0.0
|
1.0
|
OP2
|
A:DC11
|
1.4
|
0.0
|
1.0
|
OP1
|
A:DC11
|
1.4
|
0.0
|
1.0
|
O5'
|
A:DC11
|
1.5
|
0.0
|
1.0
|
O3'
|
A:DC10
|
1.6
|
0.0
|
1.0
|
C5'
|
A:DC11
|
2.6
|
0.0
|
1.0
|
H5'
|
A:DC11
|
2.7
|
0.0
|
1.0
|
C3'
|
A:DC10
|
2.7
|
0.0
|
1.0
|
H2''
|
A:DC10
|
3.0
|
0.0
|
1.0
|
H3'
|
A:DC10
|
3.0
|
0.0
|
1.0
|
H5''
|
A:DC11
|
3.1
|
0.0
|
1.0
|
C2'
|
A:DC10
|
3.3
|
0.0
|
1.0
|
H1'
|
A:DC10
|
3.7
|
0.0
|
1.0
|
C4'
|
A:DC11
|
3.8
|
0.0
|
1.0
|
H4'
|
A:DC11
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DC10
|
4.0
|
0.0
|
1.0
|
H4'
|
A:DC10
|
4.0
|
0.0
|
1.0
|
C1'
|
A:DC10
|
4.0
|
0.0
|
1.0
|
H2'
|
A:DC10
|
4.2
|
0.0
|
1.0
|
H6
|
A:DC11
|
4.4
|
0.0
|
1.0
|
O4'
|
A:DC11
|
4.4
|
0.0
|
1.0
|
O4'
|
A:DC10
|
4.5
|
0.0
|
1.0
|
|
Reference:
R.D.Beger,
P.H.Bolton.
Structures of Apurinic and Apyrimidinic Sites in Duplex Dnas. J.Biol.Chem. V. 273 15565 1998.
ISSN: ISSN 0021-9258
PubMed: 9624147
DOI: 10.1074/JBC.273.25.15565
Page generated: Fri Sep 25 12:36:03 2020
|