Phosphorus in PDB 1a8w: A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures
Phosphorus Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
22;
Binding sites:
The binding sites of Phosphorus atom in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures
(pdb code 1a8w). This binding sites where shown within
5.0 Angstroms radius around Phosphorus atom.
In total 22 binding sites of Phosphorus where determined in the
A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures, PDB code: 1a8w:
Jump to Phosphorus binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Phosphorus binding site 1 out
of 22 in 1a8w
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Phosphorus Binding Sites List in 1a8w
Phosphorus binding site 1 out
of 22 in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 1 of A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P2
b:0.6
occ:1.00
|
P
|
A:DG2
|
0.0
|
0.6
|
1.0
|
OP2
|
A:DG2
|
1.5
|
0.8
|
1.0
|
OP1
|
A:DG2
|
1.5
|
0.9
|
1.0
|
O3'
|
A:DG1
|
1.6
|
0.7
|
1.0
|
O5'
|
A:DG2
|
1.6
|
0.7
|
1.0
|
C5'
|
A:DG2
|
2.7
|
0.5
|
1.0
|
C3'
|
A:DG1
|
2.7
|
0.6
|
1.0
|
H3'
|
A:DG1
|
2.7
|
0.7
|
1.0
|
H5'
|
A:DG2
|
2.9
|
0.6
|
1.0
|
H5''
|
A:DG2
|
3.1
|
0.6
|
1.0
|
H2''
|
A:DG1
|
3.3
|
0.9
|
1.0
|
C2'
|
A:DG1
|
3.6
|
0.6
|
1.0
|
H1'
|
A:DG1
|
3.6
|
0.7
|
1.0
|
H4'
|
A:DG1
|
3.8
|
0.9
|
1.0
|
C4'
|
A:DG1
|
4.0
|
0.7
|
1.0
|
C4'
|
A:DG2
|
4.0
|
0.5
|
1.0
|
C1'
|
A:DG1
|
4.1
|
0.5
|
1.0
|
H4'
|
A:DG2
|
4.2
|
0.5
|
1.0
|
O4'
|
A:DG2
|
4.5
|
0.5
|
1.0
|
H2'
|
A:DG1
|
4.5
|
0.8
|
1.0
|
O4'
|
A:DG1
|
4.6
|
0.6
|
1.0
|
|
Phosphorus binding site 2 out
of 22 in 1a8w
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Phosphorus Binding Sites List in 1a8w
Phosphorus binding site 2 out
of 22 in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 2 of A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P3
b:0.6
occ:1.00
|
P
|
A:DG3
|
0.0
|
0.6
|
1.0
|
OP1
|
A:DG3
|
1.5
|
0.8
|
1.0
|
OP2
|
A:DG3
|
1.5
|
0.7
|
1.0
|
O5'
|
A:DG3
|
1.6
|
0.6
|
1.0
|
O3'
|
A:DG2
|
1.6
|
0.5
|
1.0
|
C3'
|
A:DG2
|
2.7
|
0.5
|
1.0
|
C5'
|
A:DG3
|
2.7
|
0.6
|
1.0
|
H2''
|
A:DG2
|
2.8
|
0.5
|
1.0
|
H3'
|
A:DG2
|
2.9
|
0.6
|
1.0
|
H5'
|
A:DG3
|
2.9
|
0.6
|
1.0
|
H5''
|
A:DG3
|
2.9
|
0.6
|
1.0
|
C2'
|
A:DG2
|
3.2
|
0.5
|
1.0
|
H8
|
A:DG3
|
3.4
|
0.4
|
1.0
|
H1'
|
A:DG2
|
3.5
|
0.5
|
1.0
|
H2'
|
A:DG3
|
3.7
|
0.5
|
1.0
|
C1'
|
A:DG2
|
3.9
|
0.5
|
1.0
|
C4'
|
A:DG3
|
4.0
|
0.5
|
1.0
|
H2'
|
A:DG2
|
4.1
|
0.5
|
1.0
|
C4'
|
A:DG2
|
4.1
|
0.5
|
1.0
|
C8
|
A:DG3
|
4.3
|
0.4
|
1.0
|
O4'
|
A:DG3
|
4.3
|
0.5
|
1.0
|
H4'
|
A:DG2
|
4.3
|
0.5
|
1.0
|
C2'
|
A:DG3
|
4.5
|
0.5
|
1.0
|
O4'
|
A:DG2
|
4.6
|
0.5
|
1.0
|
H3'
|
A:DG3
|
4.7
|
0.5
|
1.0
|
C1'
|
A:DG3
|
4.8
|
0.5
|
1.0
|
C3'
|
A:DG3
|
4.8
|
0.5
|
1.0
|
H4'
|
A:DG3
|
4.8
|
0.6
|
1.0
|
N9
|
A:DG3
|
4.8
|
0.4
|
1.0
|
|
Phosphorus binding site 3 out
of 22 in 1a8w
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Phosphorus Binding Sites List in 1a8w
Phosphorus binding site 3 out
of 22 in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 3 of A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P4
b:0.6
occ:1.00
|
P
|
A:DC4
|
0.0
|
0.6
|
1.0
|
OP1
|
A:DC4
|
1.5
|
0.8
|
1.0
|
OP2
|
A:DC4
|
1.5
|
1.0
|
1.0
|
O5'
|
A:DC4
|
1.6
|
0.8
|
1.0
|
O3'
|
A:DG3
|
1.6
|
0.5
|
1.0
|
C5'
|
A:DC4
|
2.7
|
0.7
|
1.0
|
H5'
|
A:DC4
|
2.7
|
0.6
|
1.0
|
C3'
|
A:DG3
|
2.8
|
0.5
|
1.0
|
H4'
|
A:DG3
|
3.0
|
0.6
|
1.0
|
H5''
|
A:DC4
|
3.1
|
0.7
|
1.0
|
H3'
|
A:DG3
|
3.1
|
0.5
|
1.0
|
C4'
|
A:DG3
|
3.4
|
0.5
|
1.0
|
H2'
|
A:DC4
|
3.9
|
0.8
|
1.0
|
H1'
|
A:DG3
|
3.9
|
0.5
|
1.0
|
C4'
|
A:DC4
|
4.0
|
0.9
|
1.0
|
C2'
|
A:DG3
|
4.1
|
0.5
|
1.0
|
O4'
|
A:DG3
|
4.2
|
0.5
|
1.0
|
H2''
|
A:DG3
|
4.3
|
0.5
|
1.0
|
H3'
|
A:DC4
|
4.3
|
1.1
|
1.0
|
C1'
|
A:DG3
|
4.3
|
0.5
|
1.0
|
H6
|
A:DC4
|
4.6
|
0.6
|
1.0
|
H4'
|
A:DC4
|
4.6
|
0.9
|
1.0
|
C3'
|
A:DC4
|
4.7
|
1.0
|
1.0
|
C2'
|
A:DC4
|
4.7
|
0.9
|
1.0
|
C5'
|
A:DG3
|
4.8
|
0.6
|
1.0
|
H5''
|
A:DG3
|
4.8
|
0.6
|
1.0
|
H2'
|
A:DG3
|
4.9
|
0.5
|
1.0
|
O4'
|
A:DC4
|
4.9
|
0.8
|
1.0
|
|
Phosphorus binding site 4 out
of 22 in 1a8w
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Phosphorus Binding Sites List in 1a8w
Phosphorus binding site 4 out
of 22 in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 4 of A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P5
b:1.3
occ:1.00
|
P
|
A:DT5
|
0.0
|
1.3
|
1.0
|
OP2
|
A:DT5
|
1.5
|
1.3
|
1.0
|
OP1
|
A:DT5
|
1.5
|
1.3
|
1.0
|
O3'
|
A:DC4
|
1.6
|
1.2
|
1.0
|
O5'
|
A:DT5
|
1.6
|
1.6
|
1.0
|
C5'
|
A:DT5
|
2.7
|
1.6
|
1.0
|
C3'
|
A:DC4
|
2.7
|
1.0
|
1.0
|
H5'
|
A:DT5
|
2.7
|
1.5
|
1.0
|
H4'
|
A:DC4
|
2.8
|
0.9
|
1.0
|
H1'
|
A:DC4
|
2.9
|
1.0
|
1.0
|
H6
|
A:DT5
|
3.1
|
1.6
|
1.0
|
C4'
|
A:DC4
|
3.2
|
0.9
|
1.0
|
H3'
|
A:DC4
|
3.3
|
1.1
|
1.0
|
O4'
|
A:DC4
|
3.4
|
0.8
|
1.0
|
H5''
|
A:DT5
|
3.4
|
1.8
|
1.0
|
O4'
|
A:DT5
|
3.5
|
1.4
|
1.0
|
C1'
|
A:DC4
|
3.5
|
0.9
|
1.0
|
H73
|
A:DT5
|
3.7
|
1.8
|
1.0
|
C2'
|
A:DC4
|
3.8
|
0.9
|
1.0
|
C4'
|
A:DT5
|
3.8
|
1.6
|
1.0
|
C6
|
A:DT5
|
4.0
|
1.5
|
1.0
|
H3'
|
A:DT5
|
4.1
|
1.9
|
1.0
|
H2''
|
A:DC4
|
4.1
|
1.1
|
1.0
|
C7
|
A:DT5
|
4.6
|
1.7
|
1.0
|
C3'
|
A:DT5
|
4.6
|
1.8
|
1.0
|
O2
|
A:DC4
|
4.7
|
1.0
|
1.0
|
H2'
|
A:DC4
|
4.7
|
0.8
|
1.0
|
C1'
|
A:DT5
|
4.7
|
1.4
|
1.0
|
H4'
|
A:DT5
|
4.7
|
1.6
|
1.0
|
C5
|
A:DT5
|
4.7
|
1.5
|
1.0
|
C5'
|
A:DC4
|
4.7
|
0.7
|
1.0
|
H22
|
A:DG3
|
4.7
|
0.6
|
1.0
|
N1
|
A:DT5
|
4.8
|
1.4
|
1.0
|
H2'
|
A:DT5
|
4.9
|
1.9
|
1.0
|
N1
|
A:DC4
|
4.9
|
0.7
|
1.0
|
H72
|
A:DT6
|
4.9
|
1.1
|
1.0
|
H4'
|
A:DG11
|
4.9
|
0.8
|
1.0
|
H71
|
A:DT5
|
4.9
|
2.2
|
1.0
|
|
Phosphorus binding site 5 out
of 22 in 1a8w
Go back to
Phosphorus Binding Sites List in 1a8w
Phosphorus binding site 5 out
of 22 in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 5 of A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P6
b:2.0
occ:1.00
|
P
|
A:DT6
|
0.0
|
2.0
|
1.0
|
OP2
|
A:DT6
|
1.5
|
2.1
|
1.0
|
OP1
|
A:DT6
|
1.5
|
2.4
|
1.0
|
O5'
|
A:DT6
|
1.6
|
1.5
|
1.0
|
O3'
|
A:DT5
|
1.6
|
2.1
|
1.0
|
C5'
|
A:DT6
|
2.6
|
1.6
|
1.0
|
H2''
|
A:DT5
|
2.7
|
2.0
|
1.0
|
C3'
|
A:DT5
|
2.7
|
1.8
|
1.0
|
H5''
|
A:DT6
|
2.7
|
1.9
|
1.0
|
H5'
|
A:DT6
|
3.0
|
1.7
|
1.0
|
C2'
|
A:DT5
|
3.1
|
1.8
|
1.0
|
H4'
|
A:DT5
|
3.2
|
1.6
|
1.0
|
H3'
|
A:DT5
|
3.6
|
1.9
|
1.0
|
C4'
|
A:DT5
|
3.6
|
1.6
|
1.0
|
H1'
|
A:DT5
|
3.8
|
1.4
|
1.0
|
C4'
|
A:DT6
|
3.9
|
1.3
|
1.0
|
C1'
|
A:DT5
|
4.0
|
1.4
|
1.0
|
H2'
|
A:DT5
|
4.0
|
1.9
|
1.0
|
H3'
|
A:DT6
|
4.0
|
1.0
|
1.0
|
H2'
|
A:DT6
|
4.4
|
0.9
|
1.0
|
O4'
|
A:DT5
|
4.5
|
1.4
|
1.0
|
C3'
|
A:DT6
|
4.5
|
1.0
|
1.0
|
O4'
|
A:DT6
|
4.7
|
1.1
|
1.0
|
H6
|
A:DT6
|
4.7
|
0.9
|
1.0
|
H4'
|
A:DT6
|
4.7
|
1.4
|
1.0
|
H5''
|
A:DT5
|
4.9
|
1.8
|
1.0
|
C5'
|
A:DT5
|
4.9
|
1.6
|
1.0
|
C2'
|
A:DT6
|
5.0
|
0.9
|
1.0
|
|
Phosphorus binding site 6 out
of 22 in 1a8w
Go back to
Phosphorus Binding Sites List in 1a8w
Phosphorus binding site 6 out
of 22 in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 6 of A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P7
b:0.7
occ:1.00
|
P
|
A:DT7
|
0.0
|
0.7
|
1.0
|
OP1
|
A:DT7
|
1.5
|
0.8
|
1.0
|
OP2
|
A:DT7
|
1.5
|
0.7
|
1.0
|
O5'
|
A:DT7
|
1.6
|
0.7
|
1.0
|
O3'
|
A:DT6
|
1.6
|
0.9
|
1.0
|
H2''
|
A:DT6
|
2.6
|
0.8
|
1.0
|
C5'
|
A:DT7
|
2.7
|
0.8
|
1.0
|
C3'
|
A:DT6
|
2.7
|
1.0
|
1.0
|
H5''
|
A:DT7
|
2.8
|
0.8
|
1.0
|
H5'
|
A:DT7
|
2.9
|
0.9
|
1.0
|
H3'
|
A:DT6
|
2.9
|
1.0
|
1.0
|
C2'
|
A:DT6
|
3.2
|
0.9
|
1.0
|
H1'
|
A:DT6
|
3.8
|
1.0
|
1.0
|
H4'
|
A:DT6
|
4.0
|
1.4
|
1.0
|
C1'
|
A:DT6
|
4.0
|
0.9
|
1.0
|
H2'
|
A:DT6
|
4.0
|
0.9
|
1.0
|
C4'
|
A:DT7
|
4.1
|
0.8
|
1.0
|
C4'
|
A:DT6
|
4.1
|
1.3
|
1.0
|
H3'
|
A:DT7
|
4.1
|
1.1
|
1.0
|
H4'
|
A:DG9
|
4.2
|
0.6
|
1.0
|
O4'
|
A:DG9
|
4.6
|
0.6
|
1.0
|
O4'
|
A:DT7
|
4.7
|
0.8
|
1.0
|
O4'
|
A:DT6
|
4.7
|
1.1
|
1.0
|
H4'
|
A:DT7
|
4.7
|
0.8
|
1.0
|
C3'
|
A:DT7
|
4.8
|
0.8
|
1.0
|
H5'
|
A:DG9
|
4.8
|
0.7
|
1.0
|
C4'
|
A:DG9
|
4.9
|
0.6
|
1.0
|
|
Phosphorus binding site 7 out
of 22 in 1a8w
Go back to
Phosphorus Binding Sites List in 1a8w
Phosphorus binding site 7 out
of 22 in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 7 of A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P8
b:1.2
occ:1.00
|
P
|
A:DT8
|
0.0
|
1.2
|
1.0
|
OP1
|
A:DT8
|
1.5
|
1.7
|
1.0
|
OP2
|
A:DT8
|
1.5
|
1.6
|
1.0
|
O5'
|
A:DT8
|
1.6
|
0.9
|
1.0
|
O3'
|
A:DT7
|
1.6
|
1.2
|
1.0
|
C5'
|
A:DT8
|
2.7
|
0.8
|
1.0
|
C3'
|
A:DT7
|
2.7
|
0.8
|
1.0
|
H4'
|
A:DT7
|
2.7
|
0.8
|
1.0
|
H5''
|
A:DT8
|
2.8
|
0.9
|
1.0
|
H5'
|
A:DT8
|
2.9
|
1.0
|
1.0
|
H3'
|
A:DT7
|
3.1
|
1.1
|
1.0
|
C4'
|
A:DT7
|
3.5
|
0.8
|
1.0
|
H2''
|
A:DT7
|
3.5
|
0.8
|
1.0
|
C2'
|
A:DT7
|
3.8
|
0.7
|
1.0
|
C4'
|
A:DT8
|
3.9
|
0.7
|
1.0
|
H5''
|
A:DT7
|
4.0
|
0.8
|
1.0
|
H4'
|
A:DT8
|
4.1
|
0.7
|
1.0
|
H1'
|
A:DT7
|
4.3
|
0.8
|
1.0
|
O4'
|
A:DT8
|
4.3
|
0.6
|
1.0
|
C5'
|
A:DT7
|
4.4
|
0.8
|
1.0
|
C1'
|
A:DT7
|
4.4
|
0.7
|
1.0
|
OP1
|
A:DG9
|
4.5
|
0.8
|
1.0
|
H2'
|
A:DT7
|
4.5
|
0.9
|
1.0
|
O4'
|
A:DT7
|
4.5
|
0.8
|
1.0
|
|
Phosphorus binding site 8 out
of 22 in 1a8w
Go back to
Phosphorus Binding Sites List in 1a8w
Phosphorus binding site 8 out
of 22 in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 8 of A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P9
b:0.7
occ:1.00
|
P
|
A:DG9
|
0.0
|
0.7
|
1.0
|
OP2
|
A:DG9
|
1.5
|
1.0
|
1.0
|
OP1
|
A:DG9
|
1.5
|
0.8
|
1.0
|
O5'
|
A:DG9
|
1.6
|
0.7
|
1.0
|
O3'
|
A:DT8
|
1.6
|
0.7
|
1.0
|
C5'
|
A:DG9
|
2.7
|
0.7
|
1.0
|
C3'
|
A:DT8
|
2.7
|
0.7
|
1.0
|
H5'
|
A:DG9
|
2.8
|
0.7
|
1.0
|
H4'
|
A:DT8
|
2.8
|
0.7
|
1.0
|
H3'
|
A:DT8
|
3.0
|
0.9
|
1.0
|
H8
|
A:DG9
|
3.0
|
0.7
|
1.0
|
H5''
|
A:DG9
|
3.0
|
0.8
|
1.0
|
C4'
|
A:DT8
|
3.2
|
0.7
|
1.0
|
H5'
|
A:DT8
|
3.4
|
1.0
|
1.0
|
C5'
|
A:DT8
|
3.8
|
0.8
|
1.0
|
H2'
|
A:DG9
|
3.8
|
0.8
|
1.0
|
C8
|
A:DG9
|
3.8
|
0.7
|
1.0
|
C4'
|
A:DG9
|
4.0
|
0.6
|
1.0
|
C2'
|
A:DT8
|
4.0
|
0.6
|
1.0
|
H2''
|
A:DT8
|
4.1
|
0.7
|
1.0
|
O4'
|
A:DG9
|
4.2
|
0.6
|
1.0
|
H42
|
B:DC12
|
4.2
|
0.5
|
1.0
|
H5
|
B:DC12
|
4.3
|
0.6
|
1.0
|
O5'
|
A:DT8
|
4.5
|
0.9
|
1.0
|
O4'
|
A:DT8
|
4.5
|
0.6
|
1.0
|
N9
|
A:DG9
|
4.6
|
0.7
|
1.0
|
C2'
|
A:DG9
|
4.6
|
0.7
|
1.0
|
N7
|
A:DG9
|
4.6
|
0.7
|
1.0
|
H5''
|
A:DT8
|
4.7
|
0.9
|
1.0
|
N4
|
B:DC12
|
4.7
|
0.5
|
1.0
|
H2'
|
A:DT8
|
4.7
|
0.8
|
1.0
|
C1'
|
A:DG9
|
4.7
|
0.6
|
1.0
|
C1'
|
A:DT8
|
4.8
|
0.6
|
1.0
|
H4'
|
A:DG9
|
4.8
|
0.6
|
1.0
|
C3'
|
A:DG9
|
4.9
|
0.7
|
1.0
|
H3'
|
A:DG9
|
4.9
|
0.8
|
1.0
|
|
Phosphorus binding site 9 out
of 22 in 1a8w
Go back to
Phosphorus Binding Sites List in 1a8w
Phosphorus binding site 9 out
of 22 in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 9 of A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P10
b:0.7
occ:1.00
|
P
|
A:DG10
|
0.0
|
0.7
|
1.0
|
OP1
|
A:DG10
|
1.5
|
0.9
|
1.0
|
OP2
|
A:DG10
|
1.5
|
0.9
|
1.0
|
O5'
|
A:DG10
|
1.6
|
0.7
|
1.0
|
O3'
|
A:DG9
|
1.6
|
0.7
|
1.0
|
C5'
|
A:DG10
|
2.7
|
0.8
|
1.0
|
C3'
|
A:DG9
|
2.7
|
0.7
|
1.0
|
H2''
|
A:DG9
|
2.8
|
0.8
|
1.0
|
H3'
|
A:DG9
|
2.9
|
0.8
|
1.0
|
H5'
|
A:DG10
|
2.9
|
0.8
|
1.0
|
H5''
|
A:DG10
|
3.0
|
0.9
|
1.0
|
C2'
|
A:DG9
|
3.3
|
0.7
|
1.0
|
H1'
|
A:DG9
|
3.6
|
0.7
|
1.0
|
C4'
|
A:DG10
|
4.0
|
0.9
|
1.0
|
C1'
|
A:DG9
|
4.0
|
0.6
|
1.0
|
C4'
|
A:DG9
|
4.1
|
0.6
|
1.0
|
H2'
|
A:DG9
|
4.1
|
0.8
|
1.0
|
H2'
|
A:DG10
|
4.1
|
0.8
|
1.0
|
H4'
|
A:DG9
|
4.2
|
0.6
|
1.0
|
H22
|
A:DG10
|
4.2
|
0.6
|
1.0
|
O4'
|
A:DG10
|
4.4
|
0.7
|
1.0
|
H3'
|
A:DG10
|
4.5
|
1.2
|
1.0
|
O4'
|
A:DG9
|
4.6
|
0.6
|
1.0
|
C3'
|
A:DG10
|
4.7
|
1.1
|
1.0
|
H4'
|
A:DG10
|
4.8
|
1.1
|
1.0
|
N3
|
A:DG10
|
4.8
|
0.5
|
1.0
|
C2'
|
A:DG10
|
4.9
|
0.9
|
1.0
|
H2'
|
B:DG10
|
4.9
|
0.8
|
1.0
|
|
Phosphorus binding site 10 out
of 22 in 1a8w
Go back to
Phosphorus Binding Sites List in 1a8w
Phosphorus binding site 10 out
of 22 in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 10 of A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P11
b:1.4
occ:1.00
|
P
|
A:DG11
|
0.0
|
1.4
|
1.0
|
OP1
|
A:DG11
|
1.5
|
1.7
|
1.0
|
OP2
|
A:DG11
|
1.5
|
1.7
|
1.0
|
O3'
|
A:DG10
|
1.6
|
1.4
|
1.0
|
O5'
|
A:DG11
|
1.6
|
1.1
|
1.0
|
C5'
|
A:DG11
|
2.6
|
1.0
|
1.0
|
C3'
|
A:DG10
|
2.7
|
1.1
|
1.0
|
H5'
|
A:DG11
|
2.9
|
1.0
|
1.0
|
H5''
|
A:DG11
|
2.9
|
1.2
|
1.0
|
H3'
|
A:DG10
|
2.9
|
1.2
|
1.0
|
H2''
|
A:DG10
|
3.2
|
1.1
|
1.0
|
H1'
|
A:DG10
|
3.4
|
0.9
|
1.0
|
C2'
|
A:DG10
|
3.5
|
0.9
|
1.0
|
H2'
|
A:DG11
|
3.6
|
0.7
|
1.0
|
H8
|
A:DG11
|
3.9
|
0.6
|
1.0
|
H4'
|
A:DG10
|
4.0
|
1.1
|
1.0
|
C1'
|
A:DG10
|
4.0
|
0.7
|
1.0
|
C4'
|
A:DG11
|
4.0
|
0.8
|
1.0
|
C4'
|
A:DG10
|
4.0
|
0.9
|
1.0
|
O4'
|
A:DG11
|
4.3
|
0.7
|
1.0
|
H2'
|
A:DG10
|
4.4
|
0.8
|
1.0
|
H3'
|
A:DG11
|
4.5
|
0.8
|
1.0
|
C2'
|
A:DG11
|
4.5
|
0.6
|
1.0
|
O4'
|
A:DG10
|
4.7
|
0.7
|
1.0
|
C3'
|
A:DG11
|
4.7
|
0.7
|
1.0
|
C8
|
A:DG11
|
4.7
|
0.5
|
1.0
|
H4'
|
A:DG11
|
4.8
|
0.8
|
1.0
|
C1'
|
A:DG11
|
4.9
|
0.6
|
1.0
|
|
Reference:
S.Bouaziz,
A.Kettani,
D.J.Patel.
A K Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats. J.Mol.Biol. V. 282 637 1998.
ISSN: ISSN 0022-2836
PubMed: 9737927
DOI: 10.1006/JMBI.1998.2031
Page generated: Fri Sep 25 12:28:58 2020
|