Phosphorus in PDB 1a8w: A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures

Phosphorus Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 22;

Binding sites:

The binding sites of Phosphorus atom in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures (pdb code 1a8w). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 22 binding sites of Phosphorus where determined in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures, PDB code: 1a8w:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Phosphorus binding site 1 out of 22 in 1a8w

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Phosphorus binding site 1 out of 22 in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P2

b:0.6
occ:1.00
P A:DG2 0.0 0.6 1.0
OP2 A:DG2 1.5 0.8 1.0
OP1 A:DG2 1.5 0.9 1.0
O3' A:DG1 1.6 0.7 1.0
O5' A:DG2 1.6 0.7 1.0
C5' A:DG2 2.7 0.5 1.0
C3' A:DG1 2.7 0.6 1.0
H3' A:DG1 2.7 0.7 1.0
H5' A:DG2 2.9 0.6 1.0
H5'' A:DG2 3.1 0.6 1.0
H2'' A:DG1 3.3 0.9 1.0
C2' A:DG1 3.6 0.6 1.0
H1' A:DG1 3.6 0.7 1.0
H4' A:DG1 3.8 0.9 1.0
C4' A:DG1 4.0 0.7 1.0
C4' A:DG2 4.0 0.5 1.0
C1' A:DG1 4.1 0.5 1.0
H4' A:DG2 4.2 0.5 1.0
O4' A:DG2 4.5 0.5 1.0
H2' A:DG1 4.5 0.8 1.0
O4' A:DG1 4.6 0.6 1.0

Phosphorus binding site 2 out of 22 in 1a8w

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Phosphorus binding site 2 out of 22 in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P3

b:0.6
occ:1.00
P A:DG3 0.0 0.6 1.0
OP1 A:DG3 1.5 0.8 1.0
OP2 A:DG3 1.5 0.7 1.0
O5' A:DG3 1.6 0.6 1.0
O3' A:DG2 1.6 0.5 1.0
C3' A:DG2 2.7 0.5 1.0
C5' A:DG3 2.7 0.6 1.0
H2'' A:DG2 2.8 0.5 1.0
H3' A:DG2 2.9 0.6 1.0
H5' A:DG3 2.9 0.6 1.0
H5'' A:DG3 2.9 0.6 1.0
C2' A:DG2 3.2 0.5 1.0
H8 A:DG3 3.4 0.4 1.0
H1' A:DG2 3.5 0.5 1.0
H2' A:DG3 3.7 0.5 1.0
C1' A:DG2 3.9 0.5 1.0
C4' A:DG3 4.0 0.5 1.0
H2' A:DG2 4.1 0.5 1.0
C4' A:DG2 4.1 0.5 1.0
C8 A:DG3 4.3 0.4 1.0
O4' A:DG3 4.3 0.5 1.0
H4' A:DG2 4.3 0.5 1.0
C2' A:DG3 4.5 0.5 1.0
O4' A:DG2 4.6 0.5 1.0
H3' A:DG3 4.7 0.5 1.0
C1' A:DG3 4.8 0.5 1.0
C3' A:DG3 4.8 0.5 1.0
H4' A:DG3 4.8 0.6 1.0
N9 A:DG3 4.8 0.4 1.0

Phosphorus binding site 3 out of 22 in 1a8w

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Phosphorus binding site 3 out of 22 in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4

b:0.6
occ:1.00
P A:DC4 0.0 0.6 1.0
OP1 A:DC4 1.5 0.8 1.0
OP2 A:DC4 1.5 1.0 1.0
O5' A:DC4 1.6 0.8 1.0
O3' A:DG3 1.6 0.5 1.0
C5' A:DC4 2.7 0.7 1.0
H5' A:DC4 2.7 0.6 1.0
C3' A:DG3 2.8 0.5 1.0
H4' A:DG3 3.0 0.6 1.0
H5'' A:DC4 3.1 0.7 1.0
H3' A:DG3 3.1 0.5 1.0
C4' A:DG3 3.4 0.5 1.0
H2' A:DC4 3.9 0.8 1.0
H1' A:DG3 3.9 0.5 1.0
C4' A:DC4 4.0 0.9 1.0
C2' A:DG3 4.1 0.5 1.0
O4' A:DG3 4.2 0.5 1.0
H2'' A:DG3 4.3 0.5 1.0
H3' A:DC4 4.3 1.1 1.0
C1' A:DG3 4.3 0.5 1.0
H6 A:DC4 4.6 0.6 1.0
H4' A:DC4 4.6 0.9 1.0
C3' A:DC4 4.7 1.0 1.0
C2' A:DC4 4.7 0.9 1.0
C5' A:DG3 4.8 0.6 1.0
H5'' A:DG3 4.8 0.6 1.0
H2' A:DG3 4.9 0.5 1.0
O4' A:DC4 4.9 0.8 1.0

Phosphorus binding site 4 out of 22 in 1a8w

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Phosphorus binding site 4 out of 22 in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P5

b:1.3
occ:1.00
P A:DT5 0.0 1.3 1.0
OP2 A:DT5 1.5 1.3 1.0
OP1 A:DT5 1.5 1.3 1.0
O3' A:DC4 1.6 1.2 1.0
O5' A:DT5 1.6 1.6 1.0
C5' A:DT5 2.7 1.6 1.0
C3' A:DC4 2.7 1.0 1.0
H5' A:DT5 2.7 1.5 1.0
H4' A:DC4 2.8 0.9 1.0
H1' A:DC4 2.9 1.0 1.0
H6 A:DT5 3.1 1.6 1.0
C4' A:DC4 3.2 0.9 1.0
H3' A:DC4 3.3 1.1 1.0
O4' A:DC4 3.4 0.8 1.0
H5'' A:DT5 3.4 1.8 1.0
O4' A:DT5 3.5 1.4 1.0
C1' A:DC4 3.5 0.9 1.0
H73 A:DT5 3.7 1.8 1.0
C2' A:DC4 3.8 0.9 1.0
C4' A:DT5 3.8 1.6 1.0
C6 A:DT5 4.0 1.5 1.0
H3' A:DT5 4.1 1.9 1.0
H2'' A:DC4 4.1 1.1 1.0
C7 A:DT5 4.6 1.7 1.0
C3' A:DT5 4.6 1.8 1.0
O2 A:DC4 4.7 1.0 1.0
H2' A:DC4 4.7 0.8 1.0
C1' A:DT5 4.7 1.4 1.0
H4' A:DT5 4.7 1.6 1.0
C5 A:DT5 4.7 1.5 1.0
C5' A:DC4 4.7 0.7 1.0
H22 A:DG3 4.7 0.6 1.0
N1 A:DT5 4.8 1.4 1.0
H2' A:DT5 4.9 1.9 1.0
N1 A:DC4 4.9 0.7 1.0
H72 A:DT6 4.9 1.1 1.0
H4' A:DG11 4.9 0.8 1.0
H71 A:DT5 4.9 2.2 1.0

Phosphorus binding site 5 out of 22 in 1a8w

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Phosphorus binding site 5 out of 22 in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P6

b:2.0
occ:1.00
P A:DT6 0.0 2.0 1.0
OP2 A:DT6 1.5 2.1 1.0
OP1 A:DT6 1.5 2.4 1.0
O5' A:DT6 1.6 1.5 1.0
O3' A:DT5 1.6 2.1 1.0
C5' A:DT6 2.6 1.6 1.0
H2'' A:DT5 2.7 2.0 1.0
C3' A:DT5 2.7 1.8 1.0
H5'' A:DT6 2.7 1.9 1.0
H5' A:DT6 3.0 1.7 1.0
C2' A:DT5 3.1 1.8 1.0
H4' A:DT5 3.2 1.6 1.0
H3' A:DT5 3.6 1.9 1.0
C4' A:DT5 3.6 1.6 1.0
H1' A:DT5 3.8 1.4 1.0
C4' A:DT6 3.9 1.3 1.0
C1' A:DT5 4.0 1.4 1.0
H2' A:DT5 4.0 1.9 1.0
H3' A:DT6 4.0 1.0 1.0
H2' A:DT6 4.4 0.9 1.0
O4' A:DT5 4.5 1.4 1.0
C3' A:DT6 4.5 1.0 1.0
O4' A:DT6 4.7 1.1 1.0
H6 A:DT6 4.7 0.9 1.0
H4' A:DT6 4.7 1.4 1.0
H5'' A:DT5 4.9 1.8 1.0
C5' A:DT5 4.9 1.6 1.0
C2' A:DT6 5.0 0.9 1.0

Phosphorus binding site 6 out of 22 in 1a8w

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Phosphorus binding site 6 out of 22 in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P7

b:0.7
occ:1.00
P A:DT7 0.0 0.7 1.0
OP1 A:DT7 1.5 0.8 1.0
OP2 A:DT7 1.5 0.7 1.0
O5' A:DT7 1.6 0.7 1.0
O3' A:DT6 1.6 0.9 1.0
H2'' A:DT6 2.6 0.8 1.0
C5' A:DT7 2.7 0.8 1.0
C3' A:DT6 2.7 1.0 1.0
H5'' A:DT7 2.8 0.8 1.0
H5' A:DT7 2.9 0.9 1.0
H3' A:DT6 2.9 1.0 1.0
C2' A:DT6 3.2 0.9 1.0
H1' A:DT6 3.8 1.0 1.0
H4' A:DT6 4.0 1.4 1.0
C1' A:DT6 4.0 0.9 1.0
H2' A:DT6 4.0 0.9 1.0
C4' A:DT7 4.1 0.8 1.0
C4' A:DT6 4.1 1.3 1.0
H3' A:DT7 4.1 1.1 1.0
H4' A:DG9 4.2 0.6 1.0
O4' A:DG9 4.6 0.6 1.0
O4' A:DT7 4.7 0.8 1.0
O4' A:DT6 4.7 1.1 1.0
H4' A:DT7 4.7 0.8 1.0
C3' A:DT7 4.8 0.8 1.0
H5' A:DG9 4.8 0.7 1.0
C4' A:DG9 4.9 0.6 1.0

Phosphorus binding site 7 out of 22 in 1a8w

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Phosphorus binding site 7 out of 22 in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 7 of A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P8

b:1.2
occ:1.00
P A:DT8 0.0 1.2 1.0
OP1 A:DT8 1.5 1.7 1.0
OP2 A:DT8 1.5 1.6 1.0
O5' A:DT8 1.6 0.9 1.0
O3' A:DT7 1.6 1.2 1.0
C5' A:DT8 2.7 0.8 1.0
C3' A:DT7 2.7 0.8 1.0
H4' A:DT7 2.7 0.8 1.0
H5'' A:DT8 2.8 0.9 1.0
H5' A:DT8 2.9 1.0 1.0
H3' A:DT7 3.1 1.1 1.0
C4' A:DT7 3.5 0.8 1.0
H2'' A:DT7 3.5 0.8 1.0
C2' A:DT7 3.8 0.7 1.0
C4' A:DT8 3.9 0.7 1.0
H5'' A:DT7 4.0 0.8 1.0
H4' A:DT8 4.1 0.7 1.0
H1' A:DT7 4.3 0.8 1.0
O4' A:DT8 4.3 0.6 1.0
C5' A:DT7 4.4 0.8 1.0
C1' A:DT7 4.4 0.7 1.0
OP1 A:DG9 4.5 0.8 1.0
H2' A:DT7 4.5 0.9 1.0
O4' A:DT7 4.5 0.8 1.0

Phosphorus binding site 8 out of 22 in 1a8w

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Phosphorus binding site 8 out of 22 in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 8 of A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P9

b:0.7
occ:1.00
P A:DG9 0.0 0.7 1.0
OP2 A:DG9 1.5 1.0 1.0
OP1 A:DG9 1.5 0.8 1.0
O5' A:DG9 1.6 0.7 1.0
O3' A:DT8 1.6 0.7 1.0
C5' A:DG9 2.7 0.7 1.0
C3' A:DT8 2.7 0.7 1.0
H5' A:DG9 2.8 0.7 1.0
H4' A:DT8 2.8 0.7 1.0
H3' A:DT8 3.0 0.9 1.0
H8 A:DG9 3.0 0.7 1.0
H5'' A:DG9 3.0 0.8 1.0
C4' A:DT8 3.2 0.7 1.0
H5' A:DT8 3.4 1.0 1.0
C5' A:DT8 3.8 0.8 1.0
H2' A:DG9 3.8 0.8 1.0
C8 A:DG9 3.8 0.7 1.0
C4' A:DG9 4.0 0.6 1.0
C2' A:DT8 4.0 0.6 1.0
H2'' A:DT8 4.1 0.7 1.0
O4' A:DG9 4.2 0.6 1.0
H42 B:DC12 4.2 0.5 1.0
H5 B:DC12 4.3 0.6 1.0
O5' A:DT8 4.5 0.9 1.0
O4' A:DT8 4.5 0.6 1.0
N9 A:DG9 4.6 0.7 1.0
C2' A:DG9 4.6 0.7 1.0
N7 A:DG9 4.6 0.7 1.0
H5'' A:DT8 4.7 0.9 1.0
N4 B:DC12 4.7 0.5 1.0
H2' A:DT8 4.7 0.8 1.0
C1' A:DG9 4.7 0.6 1.0
C1' A:DT8 4.8 0.6 1.0
H4' A:DG9 4.8 0.6 1.0
C3' A:DG9 4.9 0.7 1.0
H3' A:DG9 4.9 0.8 1.0

Phosphorus binding site 9 out of 22 in 1a8w

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Phosphorus binding site 9 out of 22 in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 9 of A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P10

b:0.7
occ:1.00
P A:DG10 0.0 0.7 1.0
OP1 A:DG10 1.5 0.9 1.0
OP2 A:DG10 1.5 0.9 1.0
O5' A:DG10 1.6 0.7 1.0
O3' A:DG9 1.6 0.7 1.0
C5' A:DG10 2.7 0.8 1.0
C3' A:DG9 2.7 0.7 1.0
H2'' A:DG9 2.8 0.8 1.0
H3' A:DG9 2.9 0.8 1.0
H5' A:DG10 2.9 0.8 1.0
H5'' A:DG10 3.0 0.9 1.0
C2' A:DG9 3.3 0.7 1.0
H1' A:DG9 3.6 0.7 1.0
C4' A:DG10 4.0 0.9 1.0
C1' A:DG9 4.0 0.6 1.0
C4' A:DG9 4.1 0.6 1.0
H2' A:DG9 4.1 0.8 1.0
H2' A:DG10 4.1 0.8 1.0
H4' A:DG9 4.2 0.6 1.0
H22 A:DG10 4.2 0.6 1.0
O4' A:DG10 4.4 0.7 1.0
H3' A:DG10 4.5 1.2 1.0
O4' A:DG9 4.6 0.6 1.0
C3' A:DG10 4.7 1.1 1.0
H4' A:DG10 4.8 1.1 1.0
N3 A:DG10 4.8 0.5 1.0
C2' A:DG10 4.9 0.9 1.0
H2' B:DG10 4.9 0.8 1.0

Phosphorus binding site 10 out of 22 in 1a8w

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Phosphorus binding site 10 out of 22 in the A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 10 of A K+ Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats, uc(Nmr), 8 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P11

b:1.4
occ:1.00
P A:DG11 0.0 1.4 1.0
OP1 A:DG11 1.5 1.7 1.0
OP2 A:DG11 1.5 1.7 1.0
O3' A:DG10 1.6 1.4 1.0
O5' A:DG11 1.6 1.1 1.0
C5' A:DG11 2.6 1.0 1.0
C3' A:DG10 2.7 1.1 1.0
H5' A:DG11 2.9 1.0 1.0
H5'' A:DG11 2.9 1.2 1.0
H3' A:DG10 2.9 1.2 1.0
H2'' A:DG10 3.2 1.1 1.0
H1' A:DG10 3.4 0.9 1.0
C2' A:DG10 3.5 0.9 1.0
H2' A:DG11 3.6 0.7 1.0
H8 A:DG11 3.9 0.6 1.0
H4' A:DG10 4.0 1.1 1.0
C1' A:DG10 4.0 0.7 1.0
C4' A:DG11 4.0 0.8 1.0
C4' A:DG10 4.0 0.9 1.0
O4' A:DG11 4.3 0.7 1.0
H2' A:DG10 4.4 0.8 1.0
H3' A:DG11 4.5 0.8 1.0
C2' A:DG11 4.5 0.6 1.0
O4' A:DG10 4.7 0.7 1.0
C3' A:DG11 4.7 0.7 1.0
C8 A:DG11 4.7 0.5 1.0
H4' A:DG11 4.8 0.8 1.0
C1' A:DG11 4.9 0.6 1.0

Reference:

S.Bouaziz, A.Kettani, D.J.Patel. A K Cation-Induced Conformational Switch Within A Loop Spanning Segment of A Dna Quadruplex Containing G-G-G-C Repeats. J.Mol.Biol. V. 282 637 1998.
ISSN: ISSN 0022-2836
PubMed: 9737927
DOI: 10.1006/JMBI.1998.2031
Page generated: Fri Sep 25 12:28:58 2020

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