Phosphorus in PDB 1a8p: Ferredoxin Reductase From Azotobacter Vinelandii

Protein crystallography data

The structure of Ferredoxin Reductase From Azotobacter Vinelandii, PDB code: 1a8p was solved by G.S.Prasad, N.Kresge, A.B.Muhlberg, A.Shaw, Y.S.Jung, B.K.Burgess, C.D.Stout, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 2.00
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 68.360, 76.660, 52.040, 90.00, 90.00, 90.00
R / Rfree (%) 20.6 / 26.2

Phosphorus Binding Sites:

The binding sites of Phosphorus atom in the Ferredoxin Reductase From Azotobacter Vinelandii (pdb code 1a8p). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 2 binding sites of Phosphorus where determined in the Ferredoxin Reductase From Azotobacter Vinelandii, PDB code: 1a8p:
Jump to Phosphorus binding site number: 1; 2;

Phosphorus binding site 1 out of 2 in 1a8p

Go back to Phosphorus Binding Sites List in 1a8p
Phosphorus binding site 1 out of 2 in the Ferredoxin Reductase From Azotobacter Vinelandii


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Ferredoxin Reductase From Azotobacter Vinelandii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P259

b:18.1
occ:1.00
PA A:FAD259 0.0 18.1 1.0
O2A A:FAD259 1.3 20.9 1.0
O1A A:FAD259 1.5 33.2 1.0
O5B A:FAD259 1.5 30.9 1.0
O3P A:FAD259 1.6 18.2 1.0
C5B A:FAD259 2.6 23.8 1.0
P A:FAD259 2.9 16.3 1.0
C5' A:FAD259 3.2 35.5 1.0
O1P A:FAD259 3.4 19.8 1.0
O5' A:FAD259 3.5 19.9 1.0
C4B A:FAD259 3.6 22.2 1.0
C3B A:FAD259 3.7 27.2 1.0
O2P A:FAD259 3.8 15.6 1.0
O A:GLY74 3.8 30.2 1.0
NZ A:LYS258 3.9 45.9 1.0
O3B A:FAD259 4.0 34.7 1.0
CD A:LYS258 4.3 49.9 1.0
O3' A:FAD259 4.4 44.5 1.0
NE A:ARG51 4.5 16.2 1.0
O4B A:FAD259 4.5 10.7 1.0
C4' A:FAD259 4.6 35.0 1.0
C8A A:FAD259 4.6 13.9 1.0
CE A:LYS258 4.6 47.3 1.0
NH2 A:ARG51 4.6 23.0 1.0
C A:GLY74 4.9 22.4 1.0
C3' A:FAD259 4.9 32.1 1.0

Phosphorus binding site 2 out of 2 in 1a8p

Go back to Phosphorus Binding Sites List in 1a8p
Phosphorus binding site 2 out of 2 in the Ferredoxin Reductase From Azotobacter Vinelandii


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Ferredoxin Reductase From Azotobacter Vinelandii within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P259

b:16.3
occ:1.00
P A:FAD259 0.0 16.3 1.0
O2P A:FAD259 1.4 15.6 1.0
O3P A:FAD259 1.5 18.2 1.0
O5' A:FAD259 1.5 19.9 1.0
O1P A:FAD259 1.5 19.8 1.0
C5' A:FAD259 2.6 35.5 1.0
PA A:FAD259 2.9 18.1 1.0
O A:GLY74 3.2 30.2 1.0
O2A A:FAD259 3.3 20.9 1.0
C A:GLY74 3.6 22.4 1.0
O1A A:FAD259 3.8 33.2 1.0
C4' A:FAD259 3.8 35.0 1.0
O5B A:FAD259 3.9 30.9 1.0
NE A:ARG51 3.9 16.2 1.0
N A:LEU76 4.0 15.3 1.0
OG1 A:THR77 4.0 15.2 1.0
N A:THR77 4.1 11.9 1.0
CB A:LEU76 4.2 15.2 1.0
CA A:GLY74 4.2 22.9 1.0
N A:PRO75 4.3 24.6 1.0
O4' A:FAD259 4.3 51.1 1.0
C5B A:FAD259 4.3 23.8 1.0
NH2 A:ARG51 4.4 23.0 1.0
O A:HOH316 4.4 35.2 1.0
CA A:LEU76 4.5 13.8 1.0
CG2 A:THR77 4.6 6.7 1.0
CZ A:ARG51 4.6 21.3 1.0
O A:ASN73 4.7 32.2 1.0
CD A:ARG51 4.8 16.9 1.0
CB A:THR77 4.8 7.7 1.0
CD A:PRO75 4.8 29.1 1.0
C A:LEU76 4.8 12.3 1.0
C3' A:FAD259 4.9 32.1 1.0
CG A:ARG51 5.0 7.8 1.0

Reference:

G.Sridhar Prasad, N.Kresge, A.B.Muhlberg, A.Shaw, Y.S.Jung, B.K.Burgess, C.D.Stout. The Crystal Structure of Nadph:Ferredoxin Reductase From Azotobacter Vinelandii. Protein Sci. V. 7 2541 1998.
ISSN: ISSN 0961-8368
PubMed: 9865948
Page generated: Fri Sep 25 12:27:32 2020

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