Phosphorus in PDB 1a8n: Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures
Phosphorus Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
22;
Binding sites:
The binding sites of Phosphorus atom in the Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures
(pdb code 1a8n). This binding sites where shown within
5.0 Angstroms radius around Phosphorus atom.
In total 22 binding sites of Phosphorus where determined in the
Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures, PDB code: 1a8n:
Jump to Phosphorus binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Phosphorus binding site 1 out
of 22 in 1a8n
Go back to
Phosphorus Binding Sites List in 1a8n
Phosphorus binding site 1 out
of 22 in the Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures
 Mono view
 Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 1 of Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P2
b:0.8
occ:1.00
|
P
|
A:DG2
|
0.0
|
0.8
|
1.0
|
OP2
|
A:DG2
|
1.5
|
1.0
|
1.0
|
OP1
|
A:DG2
|
1.5
|
1.2
|
1.0
|
O3'
|
A:DG1
|
1.6
|
0.8
|
1.0
|
O5'
|
A:DG2
|
1.6
|
0.6
|
1.0
|
H3'
|
A:DG2
|
2.5
|
0.8
|
1.0
|
C3'
|
A:DG1
|
2.7
|
0.6
|
1.0
|
C5'
|
A:DG2
|
2.8
|
0.6
|
1.0
|
H2''
|
A:DG1
|
2.8
|
0.5
|
1.0
|
H4'
|
A:DG1
|
2.9
|
0.7
|
1.0
|
H5''
|
A:DG2
|
3.0
|
0.8
|
1.0
|
C2'
|
A:DG1
|
3.2
|
0.5
|
1.0
|
C4'
|
A:DG1
|
3.4
|
0.7
|
1.0
|
C3'
|
A:DG2
|
3.4
|
0.7
|
1.0
|
C4'
|
A:DG2
|
3.5
|
0.5
|
1.0
|
H3'
|
A:DG1
|
3.6
|
0.7
|
1.0
|
H5'
|
A:DG2
|
3.6
|
0.7
|
1.0
|
OP2
|
B:DG2
|
3.8
|
1.0
|
1.0
|
H5'
|
A:DG1
|
3.9
|
1.1
|
1.0
|
H2'
|
A:DG2
|
3.9
|
0.7
|
1.0
|
H2'
|
A:DG1
|
4.0
|
0.5
|
1.0
|
O4'
|
A:DG2
|
4.1
|
0.5
|
1.0
|
H1'
|
A:DG1
|
4.2
|
0.6
|
1.0
|
C1'
|
A:DG1
|
4.2
|
0.5
|
1.0
|
H22
|
A:DG2
|
4.3
|
0.4
|
1.0
|
C2'
|
A:DG2
|
4.3
|
0.6
|
1.0
|
C5'
|
A:DG1
|
4.3
|
1.0
|
1.0
|
O3'
|
A:DG2
|
4.3
|
1.0
|
1.0
|
H4'
|
A:DG2
|
4.5
|
0.7
|
1.0
|
O4'
|
A:DG1
|
4.5
|
0.6
|
1.0
|
P
|
B:DG2
|
4.7
|
0.8
|
1.0
|
N3
|
A:DG2
|
4.8
|
0.3
|
1.0
|
O3'
|
B:DG1
|
4.9
|
0.8
|
1.0
|
H5''
|
A:DG1
|
4.9
|
1.0
|
1.0
|
C1'
|
A:DG2
|
5.0
|
0.5
|
1.0
|
H3'
|
B:DG2
|
5.0
|
0.8
|
1.0
|
|
Phosphorus binding site 2 out
of 22 in 1a8n
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Phosphorus Binding Sites List in 1a8n
Phosphorus binding site 2 out
of 22 in the Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures
 Mono view
 Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 2 of Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P3
b:1.1
occ:1.00
|
P
|
A:DG3
|
0.0
|
1.1
|
1.0
|
OP2
|
A:DG3
|
1.5
|
1.7
|
1.0
|
OP1
|
A:DG3
|
1.5
|
1.3
|
1.0
|
O3'
|
A:DG2
|
1.6
|
1.0
|
1.0
|
O5'
|
A:DG3
|
1.6
|
0.9
|
1.0
|
C5'
|
A:DG3
|
2.6
|
0.8
|
1.0
|
C3'
|
A:DG2
|
2.7
|
0.7
|
1.0
|
H5''
|
A:DG3
|
2.9
|
0.9
|
1.0
|
H2''
|
A:DG2
|
2.9
|
0.7
|
1.0
|
H5'
|
A:DG3
|
2.9
|
0.9
|
1.0
|
H4'
|
A:DG2
|
3.0
|
0.7
|
1.0
|
H1'
|
A:DG2
|
3.1
|
0.6
|
1.0
|
C2'
|
A:DG2
|
3.2
|
0.6
|
1.0
|
C4'
|
A:DG2
|
3.3
|
0.5
|
1.0
|
H3'
|
A:DG2
|
3.6
|
0.8
|
1.0
|
C1'
|
A:DG2
|
3.7
|
0.5
|
1.0
|
C4'
|
A:DG3
|
4.0
|
0.6
|
1.0
|
O4'
|
A:DG2
|
4.2
|
0.5
|
1.0
|
H3'
|
A:DG3
|
4.2
|
0.6
|
1.0
|
H5''
|
A:DG2
|
4.2
|
0.8
|
1.0
|
H2'
|
A:DG2
|
4.2
|
0.7
|
1.0
|
O4'
|
A:DG3
|
4.4
|
0.5
|
1.0
|
C5'
|
A:DG2
|
4.4
|
0.6
|
1.0
|
C3'
|
A:DG3
|
4.7
|
0.5
|
1.0
|
H4'
|
A:DG3
|
4.8
|
0.8
|
1.0
|
H2'
|
A:DG3
|
4.8
|
0.6
|
1.0
|
N9
|
A:DG2
|
5.0
|
0.4
|
1.0
|
|
Phosphorus binding site 3 out
of 22 in 1a8n
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Phosphorus Binding Sites List in 1a8n
Phosphorus binding site 3 out
of 22 in the Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures
 Mono view
 Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 3 of Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P4
b:1.0
occ:1.00
|
P
|
A:DC4
|
0.0
|
1.0
|
1.0
|
OP2
|
A:DC4
|
1.5
|
1.1
|
1.0
|
OP1
|
A:DC4
|
1.5
|
1.2
|
1.0
|
O3'
|
A:DG3
|
1.6
|
0.7
|
1.0
|
O5'
|
A:DC4
|
1.6
|
1.2
|
1.0
|
C5'
|
A:DC4
|
2.7
|
1.0
|
1.0
|
H2''
|
A:DG3
|
2.7
|
0.6
|
1.0
|
H5''
|
A:DC4
|
2.7
|
1.1
|
1.0
|
C3'
|
A:DG3
|
2.7
|
0.5
|
1.0
|
H3'
|
A:DC4
|
3.0
|
0.7
|
1.0
|
C2'
|
A:DG3
|
3.1
|
0.5
|
1.0
|
H1'
|
A:DG3
|
3.3
|
0.6
|
1.0
|
H3'
|
A:DG3
|
3.4
|
0.6
|
1.0
|
H72
|
A:DT5
|
3.4
|
1.2
|
1.0
|
H5'
|
A:DC4
|
3.5
|
1.1
|
1.0
|
C3'
|
A:DC4
|
3.5
|
0.6
|
1.0
|
C4'
|
A:DC4
|
3.6
|
0.7
|
1.0
|
H4'
|
A:DG3
|
3.7
|
0.8
|
1.0
|
C1'
|
A:DG3
|
3.7
|
0.5
|
1.0
|
O3'
|
A:DC4
|
3.7
|
0.7
|
1.0
|
C4'
|
A:DG3
|
3.9
|
0.6
|
1.0
|
H2'
|
A:DG3
|
4.0
|
0.6
|
1.0
|
H6
|
A:DC4
|
4.2
|
0.7
|
1.0
|
O4'
|
A:DC4
|
4.3
|
0.7
|
1.0
|
C7
|
A:DT5
|
4.3
|
1.2
|
1.0
|
H4'
|
A:DC4
|
4.4
|
0.7
|
1.0
|
OP1
|
A:DT5
|
4.4
|
0.9
|
1.0
|
H73
|
A:DT5
|
4.4
|
1.3
|
1.0
|
O4'
|
A:DG3
|
4.4
|
0.5
|
1.0
|
P
|
A:DT5
|
4.6
|
0.8
|
1.0
|
C5
|
A:DT5
|
4.9
|
1.0
|
1.0
|
N9
|
A:DG3
|
4.9
|
0.4
|
1.0
|
|
Phosphorus binding site 4 out
of 22 in 1a8n
Go back to
Phosphorus Binding Sites List in 1a8n
Phosphorus binding site 4 out
of 22 in the Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures
 Mono view
 Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 4 of Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P5
b:0.8
occ:1.00
|
P
|
A:DT5
|
0.0
|
0.8
|
1.0
|
OP1
|
A:DT5
|
1.5
|
0.9
|
1.0
|
OP2
|
A:DT5
|
1.5
|
1.0
|
1.0
|
O3'
|
A:DC4
|
1.6
|
0.7
|
1.0
|
O5'
|
A:DT5
|
1.6
|
0.7
|
1.0
|
C5'
|
A:DT5
|
2.7
|
0.7
|
1.0
|
C3'
|
A:DC4
|
2.7
|
0.6
|
1.0
|
H5''
|
A:DT5
|
2.8
|
0.9
|
1.0
|
H4'
|
A:DC4
|
3.0
|
0.7
|
1.0
|
H2''
|
A:DC4
|
3.2
|
0.5
|
1.0
|
H5''
|
A:DC4
|
3.3
|
1.1
|
1.0
|
C4'
|
A:DC4
|
3.3
|
0.7
|
1.0
|
O4'
|
A:DT5
|
3.3
|
0.6
|
1.0
|
C2'
|
A:DC4
|
3.5
|
0.5
|
1.0
|
H5'
|
A:DT5
|
3.5
|
0.8
|
1.0
|
H3'
|
A:DC4
|
3.6
|
0.7
|
1.0
|
C4'
|
A:DT5
|
3.7
|
0.6
|
1.0
|
H6
|
A:DT5
|
3.8
|
0.8
|
1.0
|
C5'
|
A:DC4
|
3.8
|
1.0
|
1.0
|
OP1
|
A:DC4
|
4.1
|
1.2
|
1.0
|
H2'
|
A:DC4
|
4.1
|
0.5
|
1.0
|
H4'
|
A:DT5
|
4.2
|
0.5
|
1.0
|
H72
|
A:DT5
|
4.3
|
1.2
|
1.0
|
C6
|
A:DT5
|
4.4
|
0.8
|
1.0
|
O4'
|
A:DC4
|
4.6
|
0.7
|
1.0
|
O5'
|
A:DC4
|
4.6
|
1.2
|
1.0
|
P
|
A:DC4
|
4.6
|
1.0
|
1.0
|
C1'
|
A:DT5
|
4.7
|
0.6
|
1.0
|
H5'
|
A:DC4
|
4.7
|
1.1
|
1.0
|
C1'
|
A:DC4
|
4.7
|
0.5
|
1.0
|
OP2
|
A:DC4
|
4.7
|
1.1
|
1.0
|
N1
|
A:DT5
|
4.8
|
0.8
|
1.0
|
C3'
|
A:DT5
|
4.9
|
0.6
|
1.0
|
H3'
|
A:DT5
|
4.9
|
0.8
|
1.0
|
H2'
|
A:DT5
|
5.0
|
0.8
|
1.0
|
|
Phosphorus binding site 5 out
of 22 in 1a8n
Go back to
Phosphorus Binding Sites List in 1a8n
Phosphorus binding site 5 out
of 22 in the Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures
 Mono view
 Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 5 of Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P6
b:0.6
occ:1.00
|
P
|
A:DT6
|
0.0
|
0.6
|
1.0
|
OP2
|
A:DT6
|
1.5
|
0.7
|
1.0
|
OP1
|
A:DT6
|
1.5
|
0.6
|
1.0
|
O5'
|
A:DT6
|
1.6
|
0.7
|
1.0
|
O3'
|
A:DT5
|
1.6
|
0.6
|
1.0
|
H3'
|
A:DT6
|
2.7
|
1.0
|
1.0
|
C3'
|
A:DT5
|
2.8
|
0.6
|
1.0
|
C5'
|
A:DT6
|
2.8
|
0.7
|
1.0
|
H4'
|
A:DT5
|
2.9
|
0.5
|
1.0
|
H6
|
A:DT6
|
3.0
|
1.1
|
1.0
|
H1'
|
A:DT5
|
3.0
|
0.6
|
1.0
|
H5''
|
A:DT6
|
3.2
|
0.9
|
1.0
|
H2''
|
A:DT5
|
3.3
|
0.7
|
1.0
|
C4'
|
A:DT6
|
3.4
|
0.7
|
1.0
|
C4'
|
A:DT5
|
3.4
|
0.6
|
1.0
|
O4'
|
A:DT6
|
3.4
|
0.8
|
1.0
|
C2'
|
A:DT5
|
3.5
|
0.7
|
1.0
|
C3'
|
A:DT6
|
3.5
|
0.9
|
1.0
|
H5'
|
A:DT6
|
3.6
|
0.8
|
1.0
|
H3'
|
A:DT5
|
3.6
|
0.8
|
1.0
|
C1'
|
A:DT5
|
3.7
|
0.6
|
1.0
|
C6
|
A:DT6
|
3.9
|
1.2
|
1.0
|
O4'
|
A:DT5
|
4.1
|
0.6
|
1.0
|
OP1
|
A:DT7
|
4.2
|
1.6
|
1.0
|
C1'
|
A:DT6
|
4.2
|
1.0
|
1.0
|
H71
|
A:DT6
|
4.3
|
1.6
|
1.0
|
C2'
|
A:DT6
|
4.4
|
1.1
|
1.0
|
H4'
|
A:DT6
|
4.4
|
0.8
|
1.0
|
H2'
|
A:DT5
|
4.5
|
0.8
|
1.0
|
N1
|
A:DT6
|
4.5
|
1.1
|
1.0
|
H2'
|
A:DT6
|
4.5
|
1.2
|
1.0
|
H73
|
A:DT6
|
4.6
|
1.9
|
1.0
|
O3'
|
A:DT6
|
4.7
|
1.2
|
1.0
|
H5'
|
A:DT5
|
4.7
|
0.8
|
1.0
|
C5'
|
A:DT5
|
4.7
|
0.7
|
1.0
|
C5
|
A:DT6
|
4.8
|
1.4
|
1.0
|
C7
|
A:DT6
|
4.8
|
1.5
|
1.0
|
O2
|
A:DT5
|
5.0
|
0.9
|
1.0
|
|
Phosphorus binding site 6 out
of 22 in 1a8n
Go back to
Phosphorus Binding Sites List in 1a8n
Phosphorus binding site 6 out
of 22 in the Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures
 Mono view
 Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 6 of Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P7
b:1.4
occ:1.00
|
P
|
A:DT7
|
0.0
|
1.4
|
1.0
|
OP2
|
A:DT7
|
1.5
|
1.9
|
1.0
|
OP1
|
A:DT7
|
1.5
|
1.6
|
1.0
|
O5'
|
A:DT7
|
1.6
|
1.3
|
1.0
|
O3'
|
A:DT6
|
1.6
|
1.2
|
1.0
|
C3'
|
A:DT6
|
2.6
|
0.9
|
1.0
|
C5'
|
A:DT7
|
2.6
|
1.1
|
1.0
|
H3'
|
A:DT6
|
2.8
|
1.0
|
1.0
|
H5''
|
A:DT7
|
2.9
|
0.9
|
1.0
|
H5'
|
A:DT7
|
2.9
|
1.3
|
1.0
|
H5''
|
A:DT6
|
3.1
|
0.9
|
1.0
|
H4'
|
A:DT6
|
3.3
|
0.8
|
1.0
|
C4'
|
A:DT6
|
3.3
|
0.7
|
1.0
|
H2''
|
A:DT6
|
3.7
|
1.1
|
1.0
|
C5'
|
A:DT6
|
3.8
|
0.7
|
1.0
|
C2'
|
A:DT6
|
3.8
|
1.1
|
1.0
|
C4'
|
A:DT7
|
3.9
|
1.1
|
1.0
|
H4'
|
A:DT7
|
4.1
|
1.4
|
1.0
|
OP2
|
A:DT6
|
4.1
|
0.7
|
1.0
|
O4'
|
A:DT7
|
4.2
|
1.1
|
1.0
|
H2'
|
A:DT6
|
4.3
|
1.2
|
1.0
|
H5'
|
A:DT6
|
4.5
|
0.8
|
1.0
|
O4'
|
A:DT6
|
4.6
|
0.8
|
1.0
|
O5'
|
A:DT6
|
4.7
|
0.7
|
1.0
|
C1'
|
A:DT6
|
4.9
|
1.0
|
1.0
|
|
Phosphorus binding site 7 out
of 22 in 1a8n
Go back to
Phosphorus Binding Sites List in 1a8n
Phosphorus binding site 7 out
of 22 in the Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures
 Mono view
 Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 7 of Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P8
b:1.1
occ:1.00
|
P
|
A:DT8
|
0.0
|
1.1
|
1.0
|
OP2
|
A:DT8
|
1.5
|
1.1
|
1.0
|
OP1
|
A:DT8
|
1.5
|
1.2
|
1.0
|
O3'
|
A:DT7
|
1.6
|
1.4
|
1.0
|
O5'
|
A:DT8
|
1.6
|
1.2
|
1.0
|
H5''
|
A:DT8
|
2.6
|
1.1
|
1.0
|
C5'
|
A:DT8
|
2.6
|
1.1
|
1.0
|
C3'
|
A:DT7
|
2.6
|
1.2
|
1.0
|
H3'
|
A:DT7
|
2.9
|
1.2
|
1.0
|
H4'
|
A:DT7
|
3.1
|
1.4
|
1.0
|
O4'
|
A:DT8
|
3.4
|
0.8
|
1.0
|
C4'
|
A:DT7
|
3.4
|
1.1
|
1.0
|
H5'
|
A:DT8
|
3.4
|
1.3
|
1.0
|
H2''
|
A:DT7
|
3.6
|
1.1
|
1.0
|
C4'
|
A:DT8
|
3.6
|
0.9
|
1.0
|
H6
|
A:DT8
|
3.7
|
0.7
|
1.0
|
C2'
|
A:DT7
|
3.8
|
1.2
|
1.0
|
H5'
|
A:DT7
|
3.8
|
1.3
|
1.0
|
H2'
|
A:DT8
|
4.1
|
0.9
|
1.0
|
C6
|
A:DT8
|
4.1
|
0.7
|
1.0
|
H4'
|
A:DT8
|
4.2
|
0.9
|
1.0
|
C5'
|
A:DT7
|
4.2
|
1.1
|
1.0
|
H2'
|
A:DT7
|
4.3
|
1.4
|
1.0
|
H72
|
A:DT8
|
4.4
|
1.3
|
1.0
|
C1'
|
A:DT8
|
4.4
|
0.7
|
1.0
|
N1
|
A:DT8
|
4.5
|
0.8
|
1.0
|
O4'
|
A:DT7
|
4.6
|
1.1
|
1.0
|
C2'
|
A:DT8
|
4.7
|
0.9
|
1.0
|
C1'
|
A:DT7
|
4.7
|
1.1
|
1.0
|
C3'
|
A:DT8
|
4.8
|
0.9
|
1.0
|
C5
|
A:DT8
|
4.8
|
0.9
|
1.0
|
H5''
|
A:DT7
|
4.9
|
0.9
|
1.0
|
|
Phosphorus binding site 8 out
of 22 in 1a8n
Go back to
Phosphorus Binding Sites List in 1a8n
Phosphorus binding site 8 out
of 22 in the Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures
 Mono view
 Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 8 of Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P9
b:0.8
occ:1.00
|
P
|
A:DG9
|
0.0
|
0.8
|
1.0
|
OP2
|
A:DG9
|
1.5
|
0.8
|
1.0
|
OP1
|
A:DG9
|
1.5
|
1.1
|
1.0
|
O3'
|
A:DT8
|
1.6
|
0.8
|
1.0
|
O5'
|
A:DG9
|
1.6
|
0.7
|
1.0
|
C3'
|
A:DT8
|
2.7
|
0.9
|
1.0
|
C5'
|
A:DG9
|
2.7
|
0.8
|
1.0
|
H5'
|
A:DG9
|
2.8
|
0.9
|
1.0
|
H3'
|
A:DT8
|
2.8
|
1.1
|
1.0
|
H8
|
A:DG9
|
2.9
|
0.5
|
1.0
|
H5''
|
A:DG9
|
3.2
|
0.9
|
1.0
|
H2''
|
A:DT8
|
3.3
|
0.9
|
1.0
|
H2'
|
B:DG11
|
3.4
|
0.8
|
1.0
|
C2'
|
A:DT8
|
3.5
|
0.9
|
1.0
|
H1'
|
A:DT8
|
3.6
|
0.8
|
1.0
|
H2'
|
A:DG9
|
3.7
|
0.5
|
1.0
|
C8
|
A:DG9
|
3.9
|
0.4
|
1.0
|
H5
|
B:DC12
|
3.9
|
0.5
|
1.0
|
H2''
|
B:DG11
|
3.9
|
0.8
|
1.0
|
C4'
|
A:DG9
|
4.0
|
0.6
|
1.0
|
H4'
|
A:DT8
|
4.0
|
0.9
|
1.0
|
C4'
|
A:DT8
|
4.0
|
0.9
|
1.0
|
C1'
|
A:DT8
|
4.1
|
0.7
|
1.0
|
O4'
|
A:DG9
|
4.2
|
0.6
|
1.0
|
C2'
|
B:DG11
|
4.2
|
0.8
|
1.0
|
H8
|
B:DG11
|
4.3
|
0.7
|
1.0
|
H6
|
B:DC12
|
4.3
|
0.7
|
1.0
|
H2'
|
A:DT8
|
4.4
|
0.9
|
1.0
|
C2'
|
A:DG9
|
4.5
|
0.4
|
1.0
|
O4'
|
A:DT8
|
4.6
|
0.8
|
1.0
|
N9
|
A:DG9
|
4.6
|
0.4
|
1.0
|
C8
|
B:DG11
|
4.7
|
0.6
|
1.0
|
N7
|
A:DG9
|
4.7
|
0.4
|
1.0
|
C1'
|
A:DG9
|
4.7
|
0.4
|
1.0
|
H3'
|
A:DG9
|
4.8
|
0.6
|
1.0
|
H5''
|
B:DG11
|
4.8
|
0.8
|
1.0
|
H4'
|
A:DG9
|
4.8
|
0.7
|
1.0
|
C3'
|
A:DG9
|
4.8
|
0.5
|
1.0
|
C5
|
B:DC12
|
4.8
|
0.5
|
1.0
|
|
Phosphorus binding site 9 out
of 22 in 1a8n
Go back to
Phosphorus Binding Sites List in 1a8n
Phosphorus binding site 9 out
of 22 in the Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures
 Mono view
 Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 9 of Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P10
b:0.8
occ:1.00
|
P
|
A:DG10
|
0.0
|
0.8
|
1.0
|
OP2
|
A:DG10
|
1.5
|
1.0
|
1.0
|
OP1
|
A:DG10
|
1.5
|
1.0
|
1.0
|
O3'
|
A:DG9
|
1.6
|
0.6
|
1.0
|
O5'
|
A:DG10
|
1.6
|
0.8
|
1.0
|
C3'
|
A:DG9
|
2.7
|
0.5
|
1.0
|
C5'
|
A:DG10
|
2.7
|
0.6
|
1.0
|
H5''
|
A:DG10
|
2.8
|
0.7
|
1.0
|
H3'
|
A:DG9
|
2.8
|
0.6
|
1.0
|
H2''
|
A:DG9
|
3.1
|
0.6
|
1.0
|
H5'
|
A:DG10
|
3.1
|
0.7
|
1.0
|
C2'
|
A:DG9
|
3.4
|
0.4
|
1.0
|
H1'
|
A:DG9
|
3.9
|
0.6
|
1.0
|
C4'
|
A:DG10
|
4.1
|
0.6
|
1.0
|
C4'
|
A:DG9
|
4.1
|
0.6
|
1.0
|
H4'
|
A:DG9
|
4.1
|
0.7
|
1.0
|
C1'
|
A:DG9
|
4.2
|
0.4
|
1.0
|
H2'
|
A:DG9
|
4.2
|
0.5
|
1.0
|
H4'
|
A:DG10
|
4.2
|
0.7
|
1.0
|
H3'
|
A:DG10
|
4.5
|
0.7
|
1.0
|
O4'
|
A:DG9
|
4.7
|
0.6
|
1.0
|
C3'
|
A:DG10
|
4.9
|
0.7
|
1.0
|
H22
|
A:DG10
|
5.0
|
0.4
|
1.0
|
|
Phosphorus binding site 10 out
of 22 in 1a8n
Go back to
Phosphorus Binding Sites List in 1a8n
Phosphorus binding site 10 out
of 22 in the Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures
 Mono view
 Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 10 of Solution Structure of A Na+ Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Aav and Human Chromosome 19, uc(Nmr), 8 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P11
b:0.9
occ:1.00
|
P
|
A:DG11
|
0.0
|
0.9
|
1.0
|
OP1
|
A:DG11
|
1.5
|
1.2
|
1.0
|
OP2
|
A:DG11
|
1.5
|
1.1
|
1.0
|
O3'
|
A:DG10
|
1.6
|
0.8
|
1.0
|
O5'
|
A:DG11
|
1.6
|
0.8
|
1.0
|
C5'
|
A:DG11
|
2.7
|
0.8
|
1.0
|
C3'
|
A:DG10
|
2.7
|
0.7
|
1.0
|
H5'
|
A:DG11
|
2.9
|
1.0
|
1.0
|
H2''
|
A:DG10
|
2.9
|
0.7
|
1.0
|
H3'
|
A:DG10
|
3.0
|
0.7
|
1.0
|
H5''
|
A:DG11
|
3.0
|
0.8
|
1.0
|
H1'
|
A:DG10
|
3.1
|
0.7
|
1.0
|
C2'
|
A:DG10
|
3.2
|
0.6
|
1.0
|
C1'
|
A:DG10
|
3.7
|
0.6
|
1.0
|
C4'
|
A:DG10
|
4.0
|
0.6
|
1.0
|
C4'
|
A:DG11
|
4.0
|
0.8
|
1.0
|
H4'
|
A:DG10
|
4.0
|
0.7
|
1.0
|
H4'
|
A:DG11
|
4.2
|
0.9
|
1.0
|
H2'
|
A:DG10
|
4.2
|
0.6
|
1.0
|
O4'
|
A:DG10
|
4.4
|
0.6
|
1.0
|
O4'
|
A:DG11
|
4.5
|
0.8
|
1.0
|
N9
|
A:DG10
|
4.9
|
0.5
|
1.0
|
H8
|
A:DG11
|
4.9
|
0.7
|
1.0
|
|
Reference:
A.Kettani,
S.Bouaziz,
A.Gorin,
H.Zhao,
R.A.Jones,
D.J.Patel.
Solution Structure of A Na Cation Stabilized Dna Quadruplex Containing G.G.G.G and G.C.G.C Tetrads Formed By G-G-G-C Repeats Observed in Adeno-Associated Viral Dna. J.Mol.Biol. V. 282 619 1998.
ISSN: ISSN 0022-2836
PubMed: 9737926
DOI: 10.1006/JMBI.1998.2030
Page generated: Fri Sep 25 12:27:22 2020
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