Phosphorus in PDB 1a83: Intramolecular I-Motif, uc(Nmr), 6 Structures

Phosphorus Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 17;

Binding sites:

The binding sites of Phosphorus atom in the Intramolecular I-Motif, uc(Nmr), 6 Structures (pdb code 1a83). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 17 binding sites of Phosphorus where determined in the Intramolecular I-Motif, uc(Nmr), 6 Structures, PDB code: 1a83:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Phosphorus binding site 1 out of 17 in 1a83

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Phosphorus binding site 1 out of 17 in the Intramolecular I-Motif, uc(Nmr), 6 Structures


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Intramolecular I-Motif, uc(Nmr), 6 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P2

b:0.0
occ:1.00
P A:DC2 0.0 0.0 1.0
OP2 A:DC2 1.5 0.0 1.0
OP1 A:DC2 1.5 0.0 1.0
O5' A:DC2 1.6 0.0 1.0
O3' A:MCY1 1.6 0.0 1.0
C3' A:MCY1 2.7 0.0 1.0
C5' A:DC2 2.7 0.0 1.0
H5'' A:DC2 2.7 0.0 1.0
H3' A:MCY1 2.7 0.0 1.0
HO5' A:MCY1 2.8 0.0 1.0
H4' A:DC2 3.3 0.0 1.0
H4' A:MCY1 3.4 0.0 1.0
H5' A:DC2 3.5 0.0 1.0
C4' A:MCY1 3.5 0.0 1.0
C4' A:DC2 3.6 0.0 1.0
O5' A:MCY1 3.6 0.0 1.0
C2' A:MCY1 3.9 0.0 1.0
H2'' A:MCY1 3.9 0.0 1.0
C5' A:MCY1 4.1 0.0 1.0
H2' A:MCY1 4.3 0.0 1.0
H5' A:MCY1 4.4 0.0 1.0
O4' A:DC2 4.5 0.0 1.0
C3' A:DC2 4.7 0.0 1.0
H3' A:DC2 4.8 0.0 1.0
O4' A:MCY1 4.8 0.0 1.0
C1' A:MCY1 5.0 0.0 1.0

Phosphorus binding site 2 out of 17 in 1a83

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Phosphorus binding site 2 out of 17 in the Intramolecular I-Motif, uc(Nmr), 6 Structures


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Intramolecular I-Motif, uc(Nmr), 6 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P3

b:0.0
occ:1.00
P A:DT3 0.0 0.0 1.0
OP1 A:DT3 1.5 0.0 1.0
OP2 A:DT3 1.5 0.0 1.0
O3' A:DC2 1.6 0.0 1.0
O5' A:DT3 1.6 0.0 1.0
C3' A:DC2 2.6 0.0 1.0
C5' A:DT3 2.7 0.0 1.0
H5' A:DT3 2.7 0.0 1.0
H3' A:DC2 2.8 0.0 1.0
H4' A:DT3 3.1 0.0 1.0
H2'' A:DC2 3.1 0.0 1.0
C2' A:DC2 3.4 0.0 1.0
C4' A:DT3 3.4 0.0 1.0
H5'' A:DT3 3.5 0.0 1.0
H2' A:DC2 3.7 0.0 1.0
C4' A:DC2 3.9 0.0 1.0
OP2 A:DT4 4.0 0.0 1.0
H4' A:DC2 4.0 0.0 1.0
O4' A:DT3 4.3 0.0 1.0
H5' A:DC2 4.6 0.0 1.0
C3' A:DT3 4.6 0.0 1.0
C5' A:DC2 4.7 0.0 1.0
C1' A:DC2 4.7 0.0 1.0
H3' A:DT3 4.8 0.0 1.0
O5' A:DC2 4.8 0.0 1.0
O4' A:DC2 4.9 0.0 1.0

Phosphorus binding site 3 out of 17 in 1a83

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Phosphorus binding site 3 out of 17 in the Intramolecular I-Motif, uc(Nmr), 6 Structures


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Intramolecular I-Motif, uc(Nmr), 6 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4

b:0.0
occ:1.00
P A:DT4 0.0 0.0 1.0
OP2 A:DT4 1.5 0.0 1.0
OP1 A:DT4 1.5 0.0 1.0
O3' A:DT3 1.6 0.0 1.0
O5' A:DT4 1.6 0.0 1.0
C3' A:DT3 2.6 0.0 1.0
C5' A:DT4 2.7 0.0 1.0
H3' A:DT3 2.7 0.0 1.0
H5' A:DT4 2.9 0.0 1.0
H4' A:DT4 2.9 0.0 1.0
C4' A:DT4 3.2 0.0 1.0
H4' A:DT3 3.4 0.0 1.0
H5' A:DT3 3.5 0.0 1.0
C4' A:DT3 3.5 0.0 1.0
H5'' A:DT4 3.6 0.0 1.0
H3' A:DT4 3.7 0.0 1.0
C3' A:DT4 3.8 0.0 1.0
O3' A:DT4 3.8 0.0 1.0
C2' A:DT3 3.9 0.0 1.0
H2'' A:DT3 3.9 0.0 1.0
OP2 A:DT5 3.9 0.0 1.0
OP1 A:DT3 4.0 0.0 1.0
C5' A:DT3 4.1 0.0 1.0
H2' A:DT3 4.3 0.0 1.0
H4' A:DT5 4.4 0.0 1.0
P A:DT5 4.6 0.0 1.0
O4' A:DT4 4.6 0.0 1.0
O4' A:DT5 4.7 0.0 1.0
H5'' A:DT3 4.7 0.0 1.0
O4' A:DT3 4.8 0.0 1.0
C1' A:DT3 5.0 0.0 1.0

Phosphorus binding site 4 out of 17 in 1a83

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Phosphorus binding site 4 out of 17 in the Intramolecular I-Motif, uc(Nmr), 6 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Intramolecular I-Motif, uc(Nmr), 6 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P5

b:0.0
occ:1.00
P A:DT5 0.0 0.0 1.0
OP1 A:DT5 1.5 0.0 1.0
OP2 A:DT5 1.5 0.0 1.0
O5' A:DT5 1.6 0.0 1.0
O3' A:DT4 1.6 0.0 1.0
H4' A:DT4 2.6 0.0 1.0
C5' A:DT5 2.7 0.0 1.0
C3' A:DT4 2.7 0.0 1.0
H5'' A:DT5 2.7 0.0 1.0
H2'' A:DT4 2.8 0.0 1.0
C4' A:DT4 3.1 0.0 1.0
C2' A:DT4 3.2 0.0 1.0
H4' A:DT5 3.3 0.0 1.0
C4' A:DT5 3.4 0.0 1.0
H2'' A:DT3 3.5 0.0 1.0
H5' A:DT5 3.5 0.0 1.0
H3' A:DT4 3.6 0.0 1.0
O4' A:DT4 3.7 0.0 1.0
H1' A:DT4 3.8 0.0 1.0
O4' A:DT5 3.8 0.0 1.0
C1' A:DT4 3.8 0.0 1.0
O3' A:DT3 3.9 0.0 1.0
OP1 A:DT4 4.0 0.0 1.0
H2' A:DT4 4.2 0.0 1.0
C5' A:DT4 4.4 0.0 1.0
C2' A:DT3 4.5 0.0 1.0
P A:DT4 4.6 0.0 1.0
H5' A:DT4 4.8 0.0 1.0
O5' A:DT4 4.8 0.0 1.0
C3' A:DT3 4.8 0.0 1.0
C3' A:DT5 4.8 0.0 1.0
H2' A:DT3 4.9 0.0 1.0

Phosphorus binding site 5 out of 17 in 1a83

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Phosphorus binding site 5 out of 17 in the Intramolecular I-Motif, uc(Nmr), 6 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of Intramolecular I-Motif, uc(Nmr), 6 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P6

b:0.0
occ:1.00
P A:DC6 0.0 0.0 1.0
OP1 A:DC6 1.5 0.0 1.0
OP2 A:DC6 1.5 0.0 1.0
O5' A:DC6 1.6 0.0 1.0
O3' A:DT5 1.6 0.0 1.0
C5' A:DC6 2.6 0.0 1.0
C3' A:DT5 2.7 0.0 1.0
H2'' A:DT5 2.7 0.0 1.0
H5' A:DC6 2.9 0.0 1.0
H5'' A:DC6 2.9 0.0 1.0
H3' A:DT5 3.0 0.0 1.0
C2' A:DT5 3.1 0.0 1.0
H2' A:DT5 3.5 0.0 1.0
C4' A:DT5 4.0 0.0 1.0
C4' A:DC6 4.0 0.0 1.0
H4' A:DT5 4.0 0.0 1.0
H4' A:DC6 4.1 0.0 1.0
C1' A:DT5 4.5 0.0 1.0
O4' A:DC6 4.6 0.0 1.0
H5' A:DT5 4.6 0.0 1.0
H1' A:DT5 4.8 0.0 1.0
O4' A:DT5 4.8 0.0 1.0
C5' A:DT5 4.9 0.0 1.0
H3' A:DC6 5.0 0.0 1.0
H6 A:DC6 5.0 0.0 1.0

Phosphorus binding site 6 out of 17 in 1a83

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Phosphorus binding site 6 out of 17 in the Intramolecular I-Motif, uc(Nmr), 6 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of Intramolecular I-Motif, uc(Nmr), 6 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P7

b:0.0
occ:1.00
P A:DC7 0.0 0.0 1.0
OP2 A:DC7 1.5 0.0 1.0
OP1 A:DC7 1.5 0.0 1.0
O5' A:DC7 1.6 0.0 1.0
O3' A:DC6 1.6 0.0 1.0
H2'' A:DC6 2.4 0.0 1.0
C5' A:DC7 2.6 0.0 1.0
C3' A:DC6 2.7 0.0 1.0
H5' A:DC7 2.8 0.0 1.0
C2' A:DC6 3.0 0.0 1.0
O4' A:DC7 3.2 0.0 1.0
C4' A:DC7 3.2 0.0 1.0
H4' A:DC7 3.2 0.0 1.0
H3' A:DC6 3.4 0.0 1.0
H1' A:MCY1 3.5 0.0 1.0
H5'' A:DC7 3.6 0.0 1.0
H2' A:DC6 3.7 0.0 1.0
H4' A:DC6 3.7 0.0 1.0
C4' A:DC6 3.8 0.0 1.0
H2'' A:MCY1 4.1 0.0 1.0
C1' A:DC6 4.1 0.0 1.0
H1' A:DC6 4.1 0.0 1.0
H6 A:DC7 4.3 0.0 1.0
C1' A:MCY1 4.4 0.0 1.0
O4' A:DC6 4.5 0.0 1.0
C1' A:DC7 4.6 0.0 1.0
C3' A:DC7 4.7 0.0 1.0
H73 A:DT8 4.8 0.0 1.0
C2' A:MCY1 4.8 0.0 1.0
O4' A:MCY1 4.8 0.0 1.0
C6 A:DC7 4.8 0.0 1.0
O2 A:MCY1 4.9 0.0 1.0
H5' A:DC6 4.9 0.0 1.0
H4' A:MCY1 4.9 0.0 1.0
O3' A:MCY1 5.0 0.0 1.0

Phosphorus binding site 7 out of 17 in 1a83

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Phosphorus binding site 7 out of 17 in the Intramolecular I-Motif, uc(Nmr), 6 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 7 of Intramolecular I-Motif, uc(Nmr), 6 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P8

b:0.0
occ:1.00
P A:DT8 0.0 0.0 1.0
OP2 A:DT8 1.5 0.0 1.0
OP1 A:DT8 1.5 0.0 1.0
O5' A:DT8 1.6 0.0 1.0
O3' A:DC7 1.6 0.0 1.0
C5' A:DT8 2.6 0.0 1.0
C3' A:DC7 2.7 0.0 1.0
H2'' A:DC7 2.8 0.0 1.0
H5'' A:DT8 2.8 0.0 1.0
H3' A:DC7 3.0 0.0 1.0
C2' A:DC7 3.1 0.0 1.0
H4' A:DT8 3.3 0.0 1.0
C4' A:DT8 3.3 0.0 1.0
H2' A:DC7 3.4 0.0 1.0
O4' A:DT8 3.5 0.0 1.0
H5' A:DT8 3.5 0.0 1.0
C4' A:DC7 4.0 0.0 1.0
H4' A:DC7 4.0 0.0 1.0
C1' A:DC7 4.5 0.0 1.0
C3' A:DT8 4.8 0.0 1.0
H71 A:DT10 4.8 0.0 1.0
O4' A:DC7 4.8 0.0 1.0
H5'' A:DC7 4.9 0.0 1.0
C1' A:DT8 4.9 0.0 1.0
C5' A:DC7 4.9 0.0 1.0
H1' A:DC7 5.0 0.0 1.0

Phosphorus binding site 8 out of 17 in 1a83

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Phosphorus binding site 8 out of 17 in the Intramolecular I-Motif, uc(Nmr), 6 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 8 of Intramolecular I-Motif, uc(Nmr), 6 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P9

b:0.0
occ:1.00
P A:DT9 0.0 0.0 1.0
OP1 A:DT9 1.5 0.0 1.0
OP2 A:DT9 1.5 0.0 1.0
O3' A:DT8 1.6 0.0 1.0
O5' A:DT9 1.6 0.0 1.0
C5' A:DT9 2.6 0.0 1.0
C3' A:DT8 2.6 0.0 1.0
H3' A:DT8 2.8 0.0 1.0
H5' A:DT9 2.8 0.0 1.0
H4' A:DT9 3.0 0.0 1.0
H2'' A:DT8 3.0 0.0 1.0
C4' A:DT9 3.2 0.0 1.0
C2' A:DT8 3.4 0.0 1.0
H3' A:DT9 3.5 0.0 1.0
H5'' A:DT9 3.5 0.0 1.0
C3' A:DT9 3.7 0.0 1.0
O3' A:DT9 3.8 0.0 1.0
C4' A:DT8 3.9 0.0 1.0
H4' A:DT8 3.9 0.0 1.0
H2' A:DT8 4.0 0.0 1.0
H5' A:DT8 4.4 0.0 1.0
C1' A:DT8 4.5 0.0 1.0
H1' A:DT8 4.5 0.0 1.0
O4' A:DT9 4.6 0.0 1.0
OP1 A:DT10 4.8 0.0 1.0
C5' A:DT8 4.8 0.0 1.0
O4' A:DT8 4.9 0.0 1.0
P A:DT10 4.9 0.0 1.0
H6 A:DT9 5.0 0.0 1.0

Phosphorus binding site 9 out of 17 in 1a83

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Phosphorus binding site 9 out of 17 in the Intramolecular I-Motif, uc(Nmr), 6 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 9 of Intramolecular I-Motif, uc(Nmr), 6 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P10

b:0.0
occ:1.00
P A:DT10 0.0 0.0 1.0
OP2 A:DT10 1.5 0.0 1.0
OP1 A:DT10 1.5 0.0 1.0
O5' A:DT10 1.6 0.0 1.0
O3' A:DT9 1.6 0.0 1.0
H2'' A:DT9 2.6 0.0 1.0
C5' A:DT10 2.6 0.0 1.0
C3' A:DT9 2.7 0.0 1.0
H5'' A:DT10 2.7 0.0 1.0
H4' A:DT9 2.8 0.0 1.0
H2'' A:DT8 2.9 0.0 1.0
H5' A:DT10 3.1 0.0 1.0
C2' A:DT9 3.1 0.0 1.0
C4' A:DT9 3.2 0.0 1.0
O2 A:DT8 3.3 0.0 1.0
H3' A:DT10 3.3 0.0 1.0
H1' A:DT8 3.4 0.0 1.0
H3' A:DT9 3.6 0.0 1.0
O4' A:DT9 3.7 0.0 1.0
H6 A:DT10 3.8 0.0 1.0
C2' A:DT8 3.8 0.0 1.0
C1' A:DT9 3.9 0.0 1.0
C2 A:DT8 3.9 0.0 1.0
C4' A:DT10 3.9 0.0 1.0
C1' A:DT8 3.9 0.0 1.0
H2' A:DT9 4.0 0.0 1.0
H1' A:DT9 4.0 0.0 1.0
OP2 A:DT9 4.1 0.0 1.0
C3' A:DT10 4.1 0.0 1.0
N1 A:DT8 4.2 0.0 1.0
H2' A:DT8 4.3 0.0 1.0
H73 A:DT10 4.4 0.0 1.0
C5' A:DT9 4.6 0.0 1.0
H4' A:DT10 4.6 0.0 1.0
O3' A:DT8 4.7 0.0 1.0
C6 A:DT10 4.7 0.0 1.0
O4' A:DT10 4.7 0.0 1.0
N3 A:DT8 4.8 0.0 1.0
C3' A:DT8 4.9 0.0 1.0
P A:DT9 4.9 0.0 1.0
H5' A:DT9 4.9 0.0 1.0
O3' A:DT10 5.0 0.0 1.0

Phosphorus binding site 10 out of 17 in 1a83

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Phosphorus binding site 10 out of 17 in the Intramolecular I-Motif, uc(Nmr), 6 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 10 of Intramolecular I-Motif, uc(Nmr), 6 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P11

b:0.0
occ:1.00
P A:DA11 0.0 0.0 1.0
OP2 A:DA11 1.5 0.0 1.0
OP1 A:DA11 1.5 0.0 1.0
O5' A:DA11 1.6 0.0 1.0
O3' A:DT10 1.6 0.0 1.0
H5'' A:DA11 2.6 0.0 1.0
C5' A:DA11 2.6 0.0 1.0
H2'' A:DT10 2.6 0.0 1.0
C3' A:DT10 2.7 0.0 1.0
H4' A:DT10 2.7 0.0 1.0
C2' A:DT10 3.1 0.0 1.0
C4' A:DT10 3.2 0.0 1.0
H5' A:DA11 3.4 0.0 1.0
H3' A:DT10 3.6 0.0 1.0
C4' A:DA11 3.7 0.0 1.0
H4' A:DA11 3.8 0.0 1.0
C1' A:DT10 3.9 0.0 1.0
O4' A:DT10 3.9 0.0 1.0
O4' A:DA11 4.0 0.0 1.0
H1' A:DT10 4.0 0.0 1.0
H2' A:DT10 4.0 0.0 1.0
C5' A:DT10 4.5 0.0 1.0
H5'' A:DT10 4.5 0.0 1.0

Reference:

X.Han, J.L.Leroy, M.Gueron. An Intramolecular I-Motif: the Solution Structure and Base-Pair Opening Kinetics of D(5MCCT3CCT3ACCT3CC). J.Mol.Biol. V. 278 949 1998.
ISSN: ISSN 0022-2836
PubMed: 9600855
DOI: 10.1006/JMBI.1998.1740
Page generated: Fri Sep 25 12:25:47 2020

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