Phosphorus in PDB 1a7a: Structure of Human Placental S-Adenosylhomocysteine Hydrolase: Determination of A 30 Selenium Atom Substructure From Data at A Single Wavelength

Enzymatic activity of Structure of Human Placental S-Adenosylhomocysteine Hydrolase: Determination of A 30 Selenium Atom Substructure From Data at A Single Wavelength

All present enzymatic activity of Structure of Human Placental S-Adenosylhomocysteine Hydrolase: Determination of A 30 Selenium Atom Substructure From Data at A Single Wavelength:
3.3.1.1;

Protein crystallography data

The structure of Structure of Human Placental S-Adenosylhomocysteine Hydrolase: Determination of A 30 Selenium Atom Substructure From Data at A Single Wavelength, PDB code: 1a7a was solved by M.A.Turner, C.-S.Yuan, R.T.Borchardt, M.S.Hershfield, G.D.Smith, P.L.Howell, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.80
Space group C 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 91.930, 168.020, 137.770, 90.00, 90.00, 90.00
R / Rfree (%) 22.7 / 24.7

Phosphorus Binding Sites:

The binding sites of Phosphorus atom in the Structure of Human Placental S-Adenosylhomocysteine Hydrolase: Determination of A 30 Selenium Atom Substructure From Data at A Single Wavelength (pdb code 1a7a). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 4 binding sites of Phosphorus where determined in the Structure of Human Placental S-Adenosylhomocysteine Hydrolase: Determination of A 30 Selenium Atom Substructure From Data at A Single Wavelength, PDB code: 1a7a:
Jump to Phosphorus binding site number: 1; 2; 3; 4;

Phosphorus binding site 1 out of 4 in 1a7a

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Phosphorus binding site 1 out of 4 in the Structure of Human Placental S-Adenosylhomocysteine Hydrolase: Determination of A 30 Selenium Atom Substructure From Data at A Single Wavelength


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Structure of Human Placental S-Adenosylhomocysteine Hydrolase: Determination of A 30 Selenium Atom Substructure From Data at A Single Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P433

b:14.3
occ:1.00
 PA A:NAD433 0.0 14.3 1.0
O1A A:NAD433 1.5 13.8 1.0
O2A A:NAD433 1.5 13.8 1.0
O5B A:NAD433 1.6 15.0 1.0
O3 A:NAD433 1.6 14.7 1.0
C5B A:NAD433 2.8 15.5 1.0
PN A:NAD433 3.1 13.5 1.0
C4B A:NAD433 3.3 15.3 1.0
C3B A:NAD433 3.4 15.9 1.0
O5D A:NAD433 3.6 13.6 1.0
O1N A:NAD433 3.6 14.4 1.0
O A:HOH459 3.6 12.5 1.0
OH B:TYR430 3.7 10.4 1.0
O3B A:NAD433 3.8 19.7 1.0
CA A:GLY222 3.9 14.3 1.0
C5D A:NAD433 4.0 15.6 1.0
O2N A:NAD433 4.3 15.7 1.0
CE1 B:TYR430 4.4 8.0 1.0
CZ B:TYR430 4.4 8.0 1.0
CE B:LYS426 4.6 12.2 1.0
N A:ASP223 4.7 14.0 1.0
O4B A:NAD433 4.7 16.5 1.0
N A:GLY222 4.8 12.8 1.0
C2B A:NAD433 4.8 15.8 1.0
C A:GLY222 4.8 14.4 1.0
CG2 A:THR158 4.9 13.1 1.0

Phosphorus binding site 2 out of 4 in 1a7a

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Phosphorus binding site 2 out of 4 in the Structure of Human Placental S-Adenosylhomocysteine Hydrolase: Determination of A 30 Selenium Atom Substructure From Data at A Single Wavelength


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Structure of Human Placental S-Adenosylhomocysteine Hydrolase: Determination of A 30 Selenium Atom Substructure From Data at A Single Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P433

b:13.5
occ:1.00
 PN A:NAD433 0.0 13.5 1.0
O1N A:NAD433 1.4 14.4 1.0
O2N A:NAD433 1.5 15.7 1.0
O5D A:NAD433 1.6 13.6 1.0
O3 A:NAD433 1.7 14.7 1.0
C5D A:NAD433 2.8 15.6 1.0
O1A A:NAD433 2.9 13.8 1.0
PA A:NAD433 3.1 14.3 1.0
O5B A:NAD433 3.3 15.0 1.0
O A:HOH459 3.5 12.5 1.0
OG1 A:THR158 3.7 13.1 1.0
O2A A:NAD433 3.7 13.8 1.0
CG2 A:VAL224 3.8 7.0 1.0
C4D A:NAD433 3.9 16.9 1.0
O4D A:NAD433 4.0 16.7 1.0
N A:VAL224 4.1 9.0 1.0
CB A:THR158 4.2 13.9 1.0
CG2 A:THR158 4.2 13.1 1.0
N A:ASP223 4.2 14.0 1.0
OD1 A:ASN191 4.3 10.3 1.0
CB A:VAL224 4.3 6.8 1.0
CB A:ASP223 4.5 16.0 1.0
OD2 A:ASP223 4.6 19.2 1.0
C6N A:NAD433 4.7 15.3 1.0
C5B A:NAD433 4.7 15.5 1.0
C3D A:NAD433 4.7 18.6 1.0
C2D A:NAD433 4.8 18.8 1.0
CA A:ASP223 4.8 13.3 1.0
C A:GLY222 4.8 14.4 1.0
CA A:VAL224 4.9 7.6 1.0
C1D A:NAD433 4.9 17.8 1.0
CA A:GLY222 4.9 14.3 1.0
C A:ASP223 5.0 11.8 1.0

Phosphorus binding site 3 out of 4 in 1a7a

Go back to Phosphorus Binding Sites List in 1a7a
Phosphorus binding site 3 out of 4 in the Structure of Human Placental S-Adenosylhomocysteine Hydrolase: Determination of A 30 Selenium Atom Substructure From Data at A Single Wavelength


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Structure of Human Placental S-Adenosylhomocysteine Hydrolase: Determination of A 30 Selenium Atom Substructure From Data at A Single Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P434

b:17.3
occ:1.00
 PA B:NAD434 0.0 17.3 1.0
O1A B:NAD434 1.5 17.8 1.0
O2A B:NAD434 1.5 16.4 1.0
O5B B:NAD434 1.6 15.5 1.0
O3 B:NAD434 1.7 16.8 1.0
C5B B:NAD434 2.8 17.4 1.0
PN B:NAD434 3.1 17.1 1.0
C4B B:NAD434 3.2 19.2 1.0
C3B B:NAD434 3.3 20.0 1.0
O5D B:NAD434 3.5 16.9 1.0
O1N B:NAD434 3.6 18.6 1.0
OH A:TYR430 3.7 12.9 1.0
O3B B:NAD434 3.7 22.3 1.0
CA B:GLY222 3.9 15.0 1.0
C5D B:NAD434 4.0 15.9 1.0
O2N B:NAD434 4.3 17.4 1.0
CE1 A:TYR430 4.4 9.6 1.0
O B:HOH440 4.4 12.2 1.0
CZ A:TYR430 4.4 9.3 1.0
CE A:LYS426 4.4 14.2 1.0
O4B B:NAD434 4.6 20.2 1.0
C2B B:NAD434 4.7 19.7 1.0
N B:ASP223 4.7 14.2 1.0
N B:GLY222 4.7 16.7 1.0
C B:GLY222 4.8 15.0 1.0
CG2 B:THR158 4.9 19.6 1.0

Phosphorus binding site 4 out of 4 in 1a7a

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Phosphorus binding site 4 out of 4 in the Structure of Human Placental S-Adenosylhomocysteine Hydrolase: Determination of A 30 Selenium Atom Substructure From Data at A Single Wavelength


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Structure of Human Placental S-Adenosylhomocysteine Hydrolase: Determination of A 30 Selenium Atom Substructure From Data at A Single Wavelength within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P434

b:17.1
occ:1.00
 PN B:NAD434 0.0 17.1 1.0
O1N B:NAD434 1.4 18.6 1.0
O2N B:NAD434 1.5 17.4 1.0
O5D B:NAD434 1.7 16.9 1.0
O3 B:NAD434 1.7 16.8 1.0
C5D B:NAD434 2.8 15.9 1.0
O1A B:NAD434 2.9 17.8 1.0
PA B:NAD434 3.1 17.3 1.0
O5B B:NAD434 3.3 15.5 1.0
OG1 B:THR158 3.6 22.0 1.0
O2A B:NAD434 3.7 16.4 1.0
C4D B:NAD434 3.9 15.9 1.0
CG2 B:VAL224 3.9 12.3 1.0
O B:HOH440 4.0 12.2 1.0
O4D B:NAD434 4.1 15.5 1.0
CG2 B:THR158 4.1 19.6 1.0
N B:VAL224 4.1 13.3 1.0
CB B:THR158 4.2 20.5 1.0
N B:ASP223 4.2 14.2 1.0
OD1 B:ASN191 4.3 19.6 1.0
CB B:VAL224 4.4 13.1 1.0
CB B:ASP223 4.6 13.7 1.0
OD2 B:ASP223 4.7 14.5 1.0
C6N B:NAD434 4.7 18.6 1.0
C5B B:NAD434 4.7 17.4 1.0
C3D B:NAD434 4.7 16.2 1.0
C2D B:NAD434 4.8 17.1 1.0
CA B:ASP223 4.8 13.9 1.0
C B:GLY222 4.8 15.0 1.0
C1D B:NAD434 4.9 16.7 1.0
CA B:VAL224 4.9 12.1 1.0
CA B:GLY222 4.9 15.0 1.0

Reference:

M.A.Turner, C.S.Yuan, R.T.Borchardt, M.S.Hershfield, G.D.Smith, P.L.Howell. Structure Determination of Selenomethionyl S-Adenosylhomocysteine Hydrolase Using Data at A Single Wavelength. Nat.Struct.Biol. V. 5 369 1998.
ISSN: ISSN 1072-8368
PubMed: 9586999
DOI: 10.1038/NSB0598-369
Page generated: Fri Sep 25 12:23:56 2020

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