Phosphorus in PDB 1a6h: Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures
Phosphorus Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Binding sites:
The binding sites of Phosphorus atom in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures
(pdb code 1a6h). This binding sites where shown within
5.0 Angstroms radius around Phosphorus atom.
In total 20 binding sites of Phosphorus where determined in the
Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures, PDB code: 1a6h:
Jump to Phosphorus binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Phosphorus binding site 1 out
of 20 in 1a6h
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Phosphorus Binding Sites List in 1a6h
Phosphorus binding site 1 out
of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 1 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P2
b:0.1
occ:1.00
|
P
|
A:DC2
|
0.0
|
0.1
|
1.0
|
OP1
|
A:DC2
|
1.5
|
0.2
|
1.0
|
OP2
|
A:DC2
|
1.5
|
0.1
|
1.0
|
O3'
|
A:DG1
|
1.6
|
0.1
|
1.0
|
O5'
|
A:DC2
|
1.6
|
0.2
|
1.0
|
C3'
|
A:DG1
|
2.6
|
0.1
|
1.0
|
C5'
|
A:DC2
|
2.7
|
0.2
|
1.0
|
H3'
|
A:DG1
|
2.7
|
0.2
|
1.0
|
H5'
|
A:DC2
|
2.9
|
0.2
|
1.0
|
H2''
|
A:DG1
|
2.9
|
0.2
|
1.0
|
H5''
|
A:DC2
|
3.0
|
0.3
|
1.0
|
C2'
|
A:DG1
|
3.3
|
0.1
|
1.0
|
H1'
|
A:DG1
|
3.8
|
0.2
|
1.0
|
C4'
|
A:DC2
|
4.0
|
0.1
|
1.0
|
C4'
|
A:DG1
|
4.0
|
0.1
|
1.0
|
H2'
|
A:DG1
|
4.1
|
0.2
|
1.0
|
C1'
|
A:DG1
|
4.1
|
0.1
|
1.0
|
H3'
|
A:DC2
|
4.1
|
0.2
|
1.0
|
H4'
|
A:DG1
|
4.1
|
0.2
|
1.0
|
O4'
|
A:DC2
|
4.4
|
0.1
|
1.0
|
O4'
|
A:DG1
|
4.6
|
0.1
|
1.0
|
C3'
|
A:DC2
|
4.7
|
0.1
|
1.0
|
H4'
|
A:DC2
|
4.9
|
0.1
|
1.0
|
H6
|
A:DC2
|
5.0
|
0.1
|
1.0
|
|
Phosphorus binding site 2 out
of 20 in 1a6h
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Phosphorus Binding Sites List in 1a6h
Phosphorus binding site 2 out
of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 2 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P3
b:0.2
occ:1.00
|
P
|
A:DG3
|
0.0
|
0.2
|
1.0
|
OP2
|
A:DG3
|
1.5
|
0.2
|
1.0
|
OP1
|
A:DG3
|
1.5
|
0.3
|
1.0
|
O3'
|
A:DC2
|
1.6
|
0.2
|
1.0
|
O5'
|
A:DG3
|
1.6
|
0.2
|
1.0
|
C5'
|
A:DG3
|
2.7
|
0.1
|
1.0
|
C3'
|
A:DC2
|
2.7
|
0.1
|
1.0
|
HO5'
|
B:DG1
|
2.7
|
0.6
|
1.0
|
H2''
|
A:DC2
|
2.7
|
0.2
|
1.0
|
H4'
|
A:DG3
|
2.8
|
0.1
|
1.0
|
H3'
|
A:DC2
|
2.9
|
0.2
|
1.0
|
H5'
|
A:DG3
|
2.9
|
0.2
|
1.0
|
C4'
|
A:DG3
|
3.2
|
0.1
|
1.0
|
C2'
|
A:DC2
|
3.2
|
0.1
|
1.0
|
O5'
|
B:DG1
|
3.5
|
0.2
|
1.0
|
H5''
|
A:DG3
|
3.6
|
0.2
|
1.0
|
O4'
|
A:DG3
|
3.8
|
0.2
|
1.0
|
H2'
|
A:DC2
|
3.9
|
0.2
|
1.0
|
C4'
|
A:DC2
|
4.0
|
0.1
|
1.0
|
H4'
|
A:DC2
|
4.1
|
0.1
|
1.0
|
H1'
|
A:DC2
|
4.2
|
0.2
|
1.0
|
C1'
|
A:DC2
|
4.3
|
0.1
|
1.0
|
C3'
|
A:DG3
|
4.6
|
0.1
|
1.0
|
C5'
|
B:DG1
|
4.6
|
0.2
|
1.0
|
H5'
|
B:DG1
|
4.6
|
0.3
|
1.0
|
H3'
|
A:DG3
|
4.8
|
0.2
|
1.0
|
H8
|
A:DG3
|
4.8
|
0.1
|
1.0
|
O4'
|
A:DC2
|
4.9
|
0.1
|
1.0
|
H5''
|
A:DC2
|
4.9
|
0.3
|
1.0
|
H5''
|
B:DG1
|
4.9
|
0.2
|
1.0
|
|
Phosphorus binding site 3 out
of 20 in 1a6h
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Phosphorus Binding Sites List in 1a6h
Phosphorus binding site 3 out
of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 3 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P4
b:0.1
occ:1.00
|
P
|
A:DG4
|
0.0
|
0.1
|
1.0
|
OP2
|
A:DG4
|
1.5
|
0.1
|
1.0
|
OP1
|
A:DG4
|
1.5
|
0.1
|
1.0
|
O3'
|
A:DG3
|
1.6
|
0.1
|
1.0
|
O5'
|
A:DG4
|
1.6
|
0.1
|
1.0
|
H2''
|
A:DG3
|
2.7
|
0.2
|
1.0
|
C3'
|
A:DG3
|
2.7
|
0.1
|
1.0
|
C5'
|
A:DG4
|
2.7
|
0.1
|
1.0
|
H5''
|
A:DG4
|
2.9
|
0.2
|
1.0
|
C2'
|
A:DG3
|
3.1
|
0.1
|
1.0
|
H3'
|
A:DG3
|
3.1
|
0.2
|
1.0
|
H1'
|
A:DG3
|
3.3
|
0.2
|
1.0
|
O4'
|
A:DG4
|
3.5
|
0.1
|
1.0
|
H5'
|
A:DG4
|
3.6
|
0.2
|
1.0
|
C4'
|
A:DG4
|
3.6
|
0.1
|
1.0
|
C1'
|
A:DG3
|
3.7
|
0.1
|
1.0
|
H4'
|
A:DG4
|
3.8
|
0.1
|
1.0
|
C4'
|
A:DG3
|
4.0
|
0.1
|
1.0
|
H2'
|
A:DG3
|
4.1
|
0.1
|
1.0
|
H4'
|
A:DG3
|
4.2
|
0.1
|
1.0
|
O4'
|
A:DG3
|
4.5
|
0.2
|
1.0
|
H8
|
A:DG4
|
4.7
|
0.1
|
1.0
|
C1'
|
A:DG4
|
4.8
|
0.1
|
1.0
|
N3
|
A:DG3
|
4.9
|
0.1
|
1.0
|
N9
|
A:DG3
|
4.9
|
0.1
|
1.0
|
|
Phosphorus binding site 4 out
of 20 in 1a6h
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Phosphorus Binding Sites List in 1a6h
Phosphorus binding site 4 out
of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 4 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P5
b:0.2
occ:1.00
|
P
|
A:DT5
|
0.0
|
0.2
|
1.0
|
OP1
|
A:DT5
|
1.5
|
0.2
|
1.0
|
OP2
|
A:DT5
|
1.5
|
0.2
|
1.0
|
O5'
|
A:DT5
|
1.6
|
0.2
|
1.0
|
O3'
|
A:DG4
|
1.6
|
0.1
|
1.0
|
C3'
|
A:DG4
|
2.7
|
0.1
|
1.0
|
H3'
|
A:DG4
|
2.7
|
0.2
|
1.0
|
C5'
|
A:DT5
|
2.7
|
0.2
|
1.0
|
H5''
|
A:DT5
|
2.7
|
0.2
|
1.0
|
H2''
|
A:DG4
|
2.8
|
0.2
|
1.0
|
H3'
|
A:DT5
|
2.9
|
0.2
|
1.0
|
C2'
|
A:DG4
|
3.2
|
0.1
|
1.0
|
H5'
|
A:DT5
|
3.4
|
0.3
|
1.0
|
H2'
|
A:DG4
|
3.6
|
0.2
|
1.0
|
C4'
|
A:DT5
|
3.8
|
0.1
|
1.0
|
OP2
|
A:DT6
|
3.8
|
0.1
|
1.0
|
C3'
|
A:DT5
|
3.9
|
0.1
|
1.0
|
O4'
|
A:DT5
|
4.0
|
0.1
|
1.0
|
C4'
|
A:DG4
|
4.1
|
0.1
|
1.0
|
O2
|
A:DT5
|
4.1
|
0.2
|
1.0
|
H4'
|
A:DG4
|
4.3
|
0.1
|
1.0
|
C1'
|
A:DG4
|
4.5
|
0.1
|
1.0
|
H1'
|
A:DG4
|
4.6
|
0.1
|
1.0
|
O3'
|
A:DT5
|
4.7
|
0.1
|
1.0
|
C2
|
A:DT5
|
4.7
|
0.1
|
1.0
|
H5'
|
A:DG4
|
4.7
|
0.2
|
1.0
|
H4'
|
A:DT5
|
4.8
|
0.2
|
1.0
|
C2'
|
A:DT5
|
4.8
|
0.1
|
1.0
|
H72
|
A:DT6
|
4.8
|
0.3
|
1.0
|
P
|
A:DT6
|
4.9
|
0.1
|
1.0
|
C1'
|
A:DT5
|
4.9
|
0.1
|
1.0
|
H2'
|
A:DT5
|
4.9
|
0.2
|
1.0
|
O4'
|
A:DG4
|
4.9
|
0.1
|
1.0
|
|
Phosphorus binding site 5 out
of 20 in 1a6h
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Phosphorus Binding Sites List in 1a6h
Phosphorus binding site 5 out
of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 5 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P6
b:0.1
occ:1.00
|
P
|
A:DT6
|
0.0
|
0.1
|
1.0
|
OP2
|
A:DT6
|
1.5
|
0.1
|
1.0
|
OP1
|
A:DT6
|
1.5
|
0.2
|
1.0
|
O5'
|
A:DT6
|
1.6
|
0.1
|
1.0
|
O3'
|
A:DT5
|
1.6
|
0.1
|
1.0
|
H6
|
A:DT6
|
2.2
|
0.2
|
1.0
|
H5'
|
A:DT6
|
2.5
|
0.2
|
1.0
|
H3'
|
A:DT5
|
2.5
|
0.2
|
1.0
|
C5'
|
A:DT6
|
2.6
|
0.1
|
1.0
|
C3'
|
A:DT5
|
2.6
|
0.1
|
1.0
|
H72
|
A:DT6
|
2.7
|
0.3
|
1.0
|
H2'
|
A:DG4
|
2.7
|
0.2
|
1.0
|
H71
|
A:DT6
|
2.8
|
0.2
|
1.0
|
C7
|
A:DT6
|
3.2
|
0.2
|
1.0
|
H5''
|
A:DT6
|
3.2
|
0.2
|
1.0
|
C6
|
A:DT6
|
3.2
|
0.2
|
1.0
|
H2''
|
A:DG4
|
3.3
|
0.2
|
1.0
|
H2'
|
A:DT6
|
3.4
|
0.2
|
1.0
|
H2'
|
A:DT5
|
3.4
|
0.2
|
1.0
|
C2'
|
A:DG4
|
3.5
|
0.1
|
1.0
|
C2'
|
A:DT5
|
3.5
|
0.1
|
1.0
|
H5''
|
A:DT5
|
3.6
|
0.2
|
1.0
|
C8
|
A:DG4
|
3.6
|
0.1
|
1.0
|
H2''
|
A:DT5
|
3.7
|
0.2
|
1.0
|
N9
|
A:DG4
|
3.7
|
0.1
|
1.0
|
C4'
|
A:DT6
|
3.7
|
0.1
|
1.0
|
C5
|
A:DT6
|
3.7
|
0.2
|
1.0
|
N7
|
A:DG4
|
3.8
|
0.1
|
1.0
|
OP2
|
A:DT5
|
3.8
|
0.2
|
1.0
|
H3'
|
A:DT6
|
3.9
|
0.2
|
1.0
|
H8
|
A:DG4
|
3.9
|
0.1
|
1.0
|
C4
|
A:DG4
|
3.9
|
0.1
|
1.0
|
C5
|
A:DG4
|
3.9
|
0.1
|
1.0
|
C4'
|
A:DT5
|
4.0
|
0.1
|
1.0
|
C2'
|
A:DT6
|
4.1
|
0.1
|
1.0
|
C3'
|
A:DT6
|
4.1
|
0.1
|
1.0
|
O4'
|
A:DT6
|
4.2
|
0.1
|
1.0
|
H73
|
A:DT6
|
4.2
|
0.3
|
1.0
|
C1'
|
A:DG4
|
4.3
|
0.1
|
1.0
|
N1
|
A:DT6
|
4.3
|
0.2
|
1.0
|
C5'
|
A:DT5
|
4.3
|
0.2
|
1.0
|
C1'
|
A:DT6
|
4.4
|
0.1
|
1.0
|
H4'
|
A:DT5
|
4.5
|
0.2
|
1.0
|
H3'
|
A:DG4
|
4.5
|
0.2
|
1.0
|
N3
|
A:DG4
|
4.6
|
0.1
|
1.0
|
H1'
|
A:DG4
|
4.6
|
0.1
|
1.0
|
C3'
|
A:DG4
|
4.6
|
0.1
|
1.0
|
H4'
|
A:DT6
|
4.7
|
0.1
|
1.0
|
C6
|
A:DG4
|
4.7
|
0.1
|
1.0
|
H21
|
B:DG1
|
4.7
|
0.2
|
1.0
|
O5'
|
A:DT5
|
4.8
|
0.2
|
1.0
|
P
|
A:DT5
|
4.9
|
0.2
|
1.0
|
C1'
|
A:DT5
|
4.9
|
0.1
|
1.0
|
O4'
|
A:DT5
|
4.9
|
0.1
|
1.0
|
|
Phosphorus binding site 6 out
of 20 in 1a6h
Go back to
Phosphorus Binding Sites List in 1a6h
Phosphorus binding site 6 out
of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 6 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P7
b:0.1
occ:1.00
|
P
|
A:DT7
|
0.0
|
0.1
|
1.0
|
OP2
|
A:DT7
|
1.5
|
0.2
|
1.0
|
OP1
|
A:DT7
|
1.5
|
0.2
|
1.0
|
O3'
|
A:DT6
|
1.6
|
0.1
|
1.0
|
O5'
|
A:DT7
|
1.6
|
0.1
|
1.0
|
H2''
|
A:DT6
|
2.5
|
0.1
|
1.0
|
C5'
|
A:DT7
|
2.7
|
0.1
|
1.0
|
H5''
|
A:DT7
|
2.7
|
0.1
|
1.0
|
C3'
|
A:DT6
|
2.8
|
0.1
|
1.0
|
H5'
|
A:DT7
|
2.9
|
0.2
|
1.0
|
H21
|
A:DG4
|
2.9
|
0.2
|
1.0
|
N7
|
A:DG8
|
3.0
|
0.1
|
1.0
|
C8
|
A:DG8
|
3.1
|
0.1
|
1.0
|
C2'
|
A:DT6
|
3.1
|
0.1
|
1.0
|
H8
|
A:DG8
|
3.1
|
0.1
|
1.0
|
H3'
|
A:DT6
|
3.2
|
0.2
|
1.0
|
H1'
|
A:DT6
|
3.3
|
0.2
|
1.0
|
N2
|
A:DG4
|
3.5
|
0.1
|
1.0
|
C5
|
A:DG8
|
3.7
|
0.1
|
1.0
|
C1'
|
A:DT6
|
3.8
|
0.1
|
1.0
|
N9
|
A:DG8
|
3.8
|
0.1
|
1.0
|
H22
|
A:DG4
|
3.8
|
0.1
|
1.0
|
H4'
|
A:DT6
|
3.9
|
0.1
|
1.0
|
H1
|
A:DG4
|
3.9
|
0.1
|
1.0
|
H2'
|
A:DT6
|
3.9
|
0.2
|
1.0
|
C4'
|
A:DT6
|
4.0
|
0.1
|
1.0
|
C4'
|
A:DT7
|
4.1
|
0.1
|
1.0
|
C2
|
A:DG4
|
4.2
|
0.1
|
1.0
|
C4
|
A:DG8
|
4.2
|
0.1
|
1.0
|
H4'
|
A:DT7
|
4.2
|
0.2
|
1.0
|
H2''
|
A:DT5
|
4.2
|
0.2
|
1.0
|
O4'
|
A:DT6
|
4.3
|
0.1
|
1.0
|
N1
|
A:DG4
|
4.3
|
0.1
|
1.0
|
C6
|
A:DG8
|
4.5
|
0.1
|
1.0
|
O4'
|
A:DT7
|
4.6
|
0.1
|
1.0
|
H1'
|
A:DG8
|
4.7
|
0.2
|
1.0
|
C1'
|
A:DG8
|
4.7
|
0.1
|
1.0
|
O4'
|
A:DG8
|
4.8
|
0.1
|
1.0
|
O6
|
A:DG8
|
4.8
|
0.1
|
1.0
|
|
Phosphorus binding site 7 out
of 20 in 1a6h
Go back to
Phosphorus Binding Sites List in 1a6h
Phosphorus binding site 7 out
of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 7 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P8
b:0.1
occ:1.00
|
P
|
A:DG8
|
0.0
|
0.1
|
1.0
|
OP2
|
A:DG8
|
1.5
|
0.3
|
1.0
|
OP1
|
A:DG8
|
1.5
|
0.2
|
1.0
|
O3'
|
A:DT7
|
1.6
|
0.2
|
1.0
|
O5'
|
A:DG8
|
1.6
|
0.2
|
1.0
|
C5'
|
A:DG8
|
2.7
|
0.2
|
1.0
|
H5''
|
A:DG8
|
2.7
|
0.2
|
1.0
|
C3'
|
A:DT7
|
2.7
|
0.1
|
1.0
|
H4'
|
A:DT7
|
2.8
|
0.2
|
1.0
|
H5'
|
A:DG8
|
3.2
|
0.2
|
1.0
|
C4'
|
A:DT7
|
3.3
|
0.1
|
1.0
|
H1'
|
A:DT7
|
3.4
|
0.2
|
1.0
|
H2''
|
A:DT7
|
3.4
|
0.2
|
1.0
|
C2'
|
A:DT7
|
3.5
|
0.1
|
1.0
|
H3'
|
A:DT7
|
3.5
|
0.2
|
1.0
|
C1'
|
A:DT7
|
3.7
|
0.1
|
1.0
|
O4'
|
A:DT7
|
3.8
|
0.1
|
1.0
|
O4'
|
A:DG8
|
3.8
|
0.1
|
1.0
|
C4'
|
A:DG8
|
3.9
|
0.1
|
1.0
|
H22
|
A:DG8
|
3.9
|
0.2
|
1.0
|
N3
|
A:DG8
|
4.0
|
0.1
|
1.0
|
N2
|
A:DG8
|
4.3
|
0.1
|
1.0
|
H2'
|
A:DG8
|
4.4
|
0.2
|
1.0
|
H4'
|
A:DG8
|
4.4
|
0.2
|
1.0
|
C2
|
A:DG8
|
4.4
|
0.1
|
1.0
|
H2'
|
A:DT7
|
4.5
|
0.2
|
1.0
|
C5'
|
A:DT7
|
4.7
|
0.1
|
1.0
|
H5'
|
A:DT7
|
4.8
|
0.2
|
1.0
|
C4
|
A:DG8
|
4.8
|
0.1
|
1.0
|
H21
|
A:DG8
|
4.8
|
0.1
|
1.0
|
C1'
|
A:DG8
|
4.9
|
0.1
|
1.0
|
H3'
|
B:DG10
|
5.0
|
0.2
|
1.0
|
|
Phosphorus binding site 8 out
of 20 in 1a6h
Go back to
Phosphorus Binding Sites List in 1a6h
Phosphorus binding site 8 out
of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 8 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P9
b:0.1
occ:1.00
|
P
|
A:DC9
|
0.0
|
0.1
|
1.0
|
OP2
|
A:DC9
|
1.5
|
0.2
|
1.0
|
OP1
|
A:DC9
|
1.5
|
0.2
|
1.0
|
O5'
|
A:DC9
|
1.6
|
0.1
|
1.0
|
O3'
|
A:DG8
|
1.6
|
0.1
|
1.0
|
C3'
|
A:DG8
|
2.6
|
0.1
|
1.0
|
C5'
|
A:DC9
|
2.7
|
0.1
|
1.0
|
H3'
|
A:DG8
|
2.8
|
0.2
|
1.0
|
H4'
|
A:DC9
|
2.8
|
0.1
|
1.0
|
H2''
|
A:DG8
|
2.9
|
0.2
|
1.0
|
H5'
|
A:DC9
|
2.9
|
0.2
|
1.0
|
C4'
|
A:DC9
|
3.2
|
0.1
|
1.0
|
C2'
|
A:DG8
|
3.3
|
0.1
|
1.0
|
H5'
|
B:DC9
|
3.5
|
0.2
|
1.0
|
H5''
|
A:DC9
|
3.6
|
0.2
|
1.0
|
H1'
|
A:DG8
|
3.7
|
0.2
|
1.0
|
O5'
|
B:DC9
|
3.8
|
0.1
|
1.0
|
O4'
|
A:DC9
|
3.9
|
0.1
|
1.0
|
OP2
|
B:DC9
|
3.9
|
0.2
|
1.0
|
C5'
|
B:DC9
|
4.0
|
0.1
|
1.0
|
C4'
|
A:DG8
|
4.0
|
0.1
|
1.0
|
C1'
|
A:DG8
|
4.0
|
0.1
|
1.0
|
H5''
|
B:DC9
|
4.1
|
0.2
|
1.0
|
H2'
|
A:DG8
|
4.1
|
0.2
|
1.0
|
H4'
|
A:DG8
|
4.2
|
0.2
|
1.0
|
P
|
B:DC9
|
4.4
|
0.1
|
1.0
|
C3'
|
A:DC9
|
4.4
|
0.1
|
1.0
|
H3'
|
A:DC9
|
4.5
|
0.2
|
1.0
|
H6
|
A:DC9
|
4.7
|
0.2
|
1.0
|
O4'
|
A:DG8
|
4.7
|
0.1
|
1.0
|
|
Phosphorus binding site 9 out
of 20 in 1a6h
Go back to
Phosphorus Binding Sites List in 1a6h
Phosphorus binding site 9 out
of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 9 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P10
b:0.1
occ:1.00
|
P
|
A:DG10
|
0.0
|
0.1
|
1.0
|
OP1
|
A:DG10
|
1.5
|
0.2
|
1.0
|
OP2
|
A:DG10
|
1.5
|
0.2
|
1.0
|
O3'
|
A:DC9
|
1.6
|
0.1
|
1.0
|
O5'
|
A:DG10
|
1.6
|
0.1
|
1.0
|
C3'
|
A:DC9
|
2.6
|
0.1
|
1.0
|
H3'
|
A:DC9
|
2.6
|
0.2
|
1.0
|
C5'
|
A:DG10
|
2.7
|
0.2
|
1.0
|
H5''
|
A:DG10
|
2.9
|
0.3
|
1.0
|
H5'
|
A:DG10
|
3.0
|
0.4
|
1.0
|
H2''
|
A:DC9
|
3.0
|
0.2
|
1.0
|
C2'
|
A:DC9
|
3.3
|
0.1
|
1.0
|
H1'
|
A:DC9
|
3.7
|
0.1
|
1.0
|
C4'
|
A:DC9
|
3.9
|
0.1
|
1.0
|
C4'
|
A:DG10
|
4.0
|
0.1
|
1.0
|
H4'
|
A:DC9
|
4.0
|
0.1
|
1.0
|
C1'
|
A:DC9
|
4.1
|
0.1
|
1.0
|
H2'
|
A:DC9
|
4.2
|
0.2
|
1.0
|
H4'
|
A:DG10
|
4.2
|
0.2
|
1.0
|
O4'
|
A:DG10
|
4.4
|
0.1
|
1.0
|
O4'
|
A:DC9
|
4.6
|
0.1
|
1.0
|
H5'
|
A:DC9
|
4.9
|
0.2
|
1.0
|
|
Phosphorus binding site 10 out
of 20 in 1a6h
Go back to
Phosphorus Binding Sites List in 1a6h
Phosphorus binding site 10 out
of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 10 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P11
b:0.1
occ:1.00
|
P
|
A:DG11
|
0.0
|
0.1
|
1.0
|
OP2
|
A:DG11
|
1.5
|
0.3
|
1.0
|
OP1
|
A:DG11
|
1.5
|
0.2
|
1.0
|
O3'
|
A:DG10
|
1.6
|
0.1
|
1.0
|
O5'
|
A:DG11
|
1.6
|
0.2
|
1.0
|
C5'
|
A:DG11
|
2.6
|
0.2
|
1.0
|
H2''
|
A:DG10
|
2.7
|
0.2
|
1.0
|
C3'
|
A:DG10
|
2.7
|
0.1
|
1.0
|
H5'
|
A:DG11
|
2.8
|
0.3
|
1.0
|
H5''
|
A:DG11
|
2.9
|
0.2
|
1.0
|
H4'
|
A:DG10
|
3.0
|
0.2
|
1.0
|
C2'
|
A:DG10
|
3.1
|
0.1
|
1.0
|
H1'
|
A:DG10
|
3.3
|
0.2
|
1.0
|
C4'
|
A:DG10
|
3.4
|
0.1
|
1.0
|
H3'
|
A:DG10
|
3.6
|
0.2
|
1.0
|
C1'
|
A:DG10
|
3.7
|
0.1
|
1.0
|
C4'
|
A:DG11
|
4.0
|
0.2
|
1.0
|
H2'
|
A:DG11
|
4.0
|
0.2
|
1.0
|
H2'
|
A:DG10
|
4.1
|
0.2
|
1.0
|
O4'
|
A:DG10
|
4.2
|
0.1
|
1.0
|
O4'
|
A:DG11
|
4.3
|
0.2
|
1.0
|
H3'
|
A:DG11
|
4.6
|
0.3
|
1.0
|
H5'
|
A:DG10
|
4.6
|
0.4
|
1.0
|
H8
|
A:DG11
|
4.6
|
0.2
|
1.0
|
C5'
|
A:DG10
|
4.6
|
0.2
|
1.0
|
C3'
|
A:DG11
|
4.7
|
0.2
|
1.0
|
H4'
|
A:DG11
|
4.8
|
0.3
|
1.0
|
C2'
|
A:DG11
|
4.8
|
0.2
|
1.0
|
N9
|
A:DG10
|
5.0
|
0.1
|
1.0
|
|
Reference:
A.Kettani,
R.A.Kumar,
D.J.Patel.
Solution Structure of A Dna Quadruplex Containing the Fragile X Syndrome Triplet Repeat. J.Mol.Biol. V. 254 638 1995.
ISSN: ISSN 0022-2836
PubMed: 7500339
DOI: 10.1006/JMBI.1995.0644
Page generated: Fri Sep 25 12:19:47 2020
|