Phosphorus in PDB 1a6h: Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures

Phosphorus Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20;

Binding sites:

The binding sites of Phosphorus atom in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures (pdb code 1a6h). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 20 binding sites of Phosphorus where determined in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures, PDB code: 1a6h:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Phosphorus binding site 1 out of 20 in 1a6h

Go back to Phosphorus Binding Sites List in 1a6h
Phosphorus binding site 1 out of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P2

b:0.1
occ:1.00
P A:DC2 0.0 0.1 1.0
OP1 A:DC2 1.5 0.2 1.0
OP2 A:DC2 1.5 0.1 1.0
O3' A:DG1 1.6 0.1 1.0
O5' A:DC2 1.6 0.2 1.0
C3' A:DG1 2.6 0.1 1.0
C5' A:DC2 2.7 0.2 1.0
H3' A:DG1 2.7 0.2 1.0
H5' A:DC2 2.9 0.2 1.0
H2'' A:DG1 2.9 0.2 1.0
H5'' A:DC2 3.0 0.3 1.0
C2' A:DG1 3.3 0.1 1.0
H1' A:DG1 3.8 0.2 1.0
C4' A:DC2 4.0 0.1 1.0
C4' A:DG1 4.0 0.1 1.0
H2' A:DG1 4.1 0.2 1.0
C1' A:DG1 4.1 0.1 1.0
H3' A:DC2 4.1 0.2 1.0
H4' A:DG1 4.1 0.2 1.0
O4' A:DC2 4.4 0.1 1.0
O4' A:DG1 4.6 0.1 1.0
C3' A:DC2 4.7 0.1 1.0
H4' A:DC2 4.9 0.1 1.0
H6 A:DC2 5.0 0.1 1.0

Phosphorus binding site 2 out of 20 in 1a6h

Go back to Phosphorus Binding Sites List in 1a6h
Phosphorus binding site 2 out of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P3

b:0.2
occ:1.00
P A:DG3 0.0 0.2 1.0
OP2 A:DG3 1.5 0.2 1.0
OP1 A:DG3 1.5 0.3 1.0
O3' A:DC2 1.6 0.2 1.0
O5' A:DG3 1.6 0.2 1.0
C5' A:DG3 2.7 0.1 1.0
C3' A:DC2 2.7 0.1 1.0
HO5' B:DG1 2.7 0.6 1.0
H2'' A:DC2 2.7 0.2 1.0
H4' A:DG3 2.8 0.1 1.0
H3' A:DC2 2.9 0.2 1.0
H5' A:DG3 2.9 0.2 1.0
C4' A:DG3 3.2 0.1 1.0
C2' A:DC2 3.2 0.1 1.0
O5' B:DG1 3.5 0.2 1.0
H5'' A:DG3 3.6 0.2 1.0
O4' A:DG3 3.8 0.2 1.0
H2' A:DC2 3.9 0.2 1.0
C4' A:DC2 4.0 0.1 1.0
H4' A:DC2 4.1 0.1 1.0
H1' A:DC2 4.2 0.2 1.0
C1' A:DC2 4.3 0.1 1.0
C3' A:DG3 4.6 0.1 1.0
C5' B:DG1 4.6 0.2 1.0
H5' B:DG1 4.6 0.3 1.0
H3' A:DG3 4.8 0.2 1.0
H8 A:DG3 4.8 0.1 1.0
O4' A:DC2 4.9 0.1 1.0
H5'' A:DC2 4.9 0.3 1.0
H5'' B:DG1 4.9 0.2 1.0

Phosphorus binding site 3 out of 20 in 1a6h

Go back to Phosphorus Binding Sites List in 1a6h
Phosphorus binding site 3 out of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4

b:0.1
occ:1.00
P A:DG4 0.0 0.1 1.0
OP2 A:DG4 1.5 0.1 1.0
OP1 A:DG4 1.5 0.1 1.0
O3' A:DG3 1.6 0.1 1.0
O5' A:DG4 1.6 0.1 1.0
H2'' A:DG3 2.7 0.2 1.0
C3' A:DG3 2.7 0.1 1.0
C5' A:DG4 2.7 0.1 1.0
H5'' A:DG4 2.9 0.2 1.0
C2' A:DG3 3.1 0.1 1.0
H3' A:DG3 3.1 0.2 1.0
H1' A:DG3 3.3 0.2 1.0
O4' A:DG4 3.5 0.1 1.0
H5' A:DG4 3.6 0.2 1.0
C4' A:DG4 3.6 0.1 1.0
C1' A:DG3 3.7 0.1 1.0
H4' A:DG4 3.8 0.1 1.0
C4' A:DG3 4.0 0.1 1.0
H2' A:DG3 4.1 0.1 1.0
H4' A:DG3 4.2 0.1 1.0
O4' A:DG3 4.5 0.2 1.0
H8 A:DG4 4.7 0.1 1.0
C1' A:DG4 4.8 0.1 1.0
N3 A:DG3 4.9 0.1 1.0
N9 A:DG3 4.9 0.1 1.0

Phosphorus binding site 4 out of 20 in 1a6h

Go back to Phosphorus Binding Sites List in 1a6h
Phosphorus binding site 4 out of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P5

b:0.2
occ:1.00
P A:DT5 0.0 0.2 1.0
OP1 A:DT5 1.5 0.2 1.0
OP2 A:DT5 1.5 0.2 1.0
O5' A:DT5 1.6 0.2 1.0
O3' A:DG4 1.6 0.1 1.0
C3' A:DG4 2.7 0.1 1.0
H3' A:DG4 2.7 0.2 1.0
C5' A:DT5 2.7 0.2 1.0
H5'' A:DT5 2.7 0.2 1.0
H2'' A:DG4 2.8 0.2 1.0
H3' A:DT5 2.9 0.2 1.0
C2' A:DG4 3.2 0.1 1.0
H5' A:DT5 3.4 0.3 1.0
H2' A:DG4 3.6 0.2 1.0
C4' A:DT5 3.8 0.1 1.0
OP2 A:DT6 3.8 0.1 1.0
C3' A:DT5 3.9 0.1 1.0
O4' A:DT5 4.0 0.1 1.0
C4' A:DG4 4.1 0.1 1.0
O2 A:DT5 4.1 0.2 1.0
H4' A:DG4 4.3 0.1 1.0
C1' A:DG4 4.5 0.1 1.0
H1' A:DG4 4.6 0.1 1.0
O3' A:DT5 4.7 0.1 1.0
C2 A:DT5 4.7 0.1 1.0
H5' A:DG4 4.7 0.2 1.0
H4' A:DT5 4.8 0.2 1.0
C2' A:DT5 4.8 0.1 1.0
H72 A:DT6 4.8 0.3 1.0
P A:DT6 4.9 0.1 1.0
C1' A:DT5 4.9 0.1 1.0
H2' A:DT5 4.9 0.2 1.0
O4' A:DG4 4.9 0.1 1.0

Phosphorus binding site 5 out of 20 in 1a6h

Go back to Phosphorus Binding Sites List in 1a6h
Phosphorus binding site 5 out of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P6

b:0.1
occ:1.00
P A:DT6 0.0 0.1 1.0
OP2 A:DT6 1.5 0.1 1.0
OP1 A:DT6 1.5 0.2 1.0
O5' A:DT6 1.6 0.1 1.0
O3' A:DT5 1.6 0.1 1.0
H6 A:DT6 2.2 0.2 1.0
H5' A:DT6 2.5 0.2 1.0
H3' A:DT5 2.5 0.2 1.0
C5' A:DT6 2.6 0.1 1.0
C3' A:DT5 2.6 0.1 1.0
H72 A:DT6 2.7 0.3 1.0
H2' A:DG4 2.7 0.2 1.0
H71 A:DT6 2.8 0.2 1.0
C7 A:DT6 3.2 0.2 1.0
H5'' A:DT6 3.2 0.2 1.0
C6 A:DT6 3.2 0.2 1.0
H2'' A:DG4 3.3 0.2 1.0
H2' A:DT6 3.4 0.2 1.0
H2' A:DT5 3.4 0.2 1.0
C2' A:DG4 3.5 0.1 1.0
C2' A:DT5 3.5 0.1 1.0
H5'' A:DT5 3.6 0.2 1.0
C8 A:DG4 3.6 0.1 1.0
H2'' A:DT5 3.7 0.2 1.0
N9 A:DG4 3.7 0.1 1.0
C4' A:DT6 3.7 0.1 1.0
C5 A:DT6 3.7 0.2 1.0
N7 A:DG4 3.8 0.1 1.0
OP2 A:DT5 3.8 0.2 1.0
H3' A:DT6 3.9 0.2 1.0
H8 A:DG4 3.9 0.1 1.0
C4 A:DG4 3.9 0.1 1.0
C5 A:DG4 3.9 0.1 1.0
C4' A:DT5 4.0 0.1 1.0
C2' A:DT6 4.1 0.1 1.0
C3' A:DT6 4.1 0.1 1.0
O4' A:DT6 4.2 0.1 1.0
H73 A:DT6 4.2 0.3 1.0
C1' A:DG4 4.3 0.1 1.0
N1 A:DT6 4.3 0.2 1.0
C5' A:DT5 4.3 0.2 1.0
C1' A:DT6 4.4 0.1 1.0
H4' A:DT5 4.5 0.2 1.0
H3' A:DG4 4.5 0.2 1.0
N3 A:DG4 4.6 0.1 1.0
H1' A:DG4 4.6 0.1 1.0
C3' A:DG4 4.6 0.1 1.0
H4' A:DT6 4.7 0.1 1.0
C6 A:DG4 4.7 0.1 1.0
H21 B:DG1 4.7 0.2 1.0
O5' A:DT5 4.8 0.2 1.0
P A:DT5 4.9 0.2 1.0
C1' A:DT5 4.9 0.1 1.0
O4' A:DT5 4.9 0.1 1.0

Phosphorus binding site 6 out of 20 in 1a6h

Go back to Phosphorus Binding Sites List in 1a6h
Phosphorus binding site 6 out of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P7

b:0.1
occ:1.00
P A:DT7 0.0 0.1 1.0
OP2 A:DT7 1.5 0.2 1.0
OP1 A:DT7 1.5 0.2 1.0
O3' A:DT6 1.6 0.1 1.0
O5' A:DT7 1.6 0.1 1.0
H2'' A:DT6 2.5 0.1 1.0
C5' A:DT7 2.7 0.1 1.0
H5'' A:DT7 2.7 0.1 1.0
C3' A:DT6 2.8 0.1 1.0
H5' A:DT7 2.9 0.2 1.0
H21 A:DG4 2.9 0.2 1.0
N7 A:DG8 3.0 0.1 1.0
C8 A:DG8 3.1 0.1 1.0
C2' A:DT6 3.1 0.1 1.0
H8 A:DG8 3.1 0.1 1.0
H3' A:DT6 3.2 0.2 1.0
H1' A:DT6 3.3 0.2 1.0
N2 A:DG4 3.5 0.1 1.0
C5 A:DG8 3.7 0.1 1.0
C1' A:DT6 3.8 0.1 1.0
N9 A:DG8 3.8 0.1 1.0
H22 A:DG4 3.8 0.1 1.0
H4' A:DT6 3.9 0.1 1.0
H1 A:DG4 3.9 0.1 1.0
H2' A:DT6 3.9 0.2 1.0
C4' A:DT6 4.0 0.1 1.0
C4' A:DT7 4.1 0.1 1.0
C2 A:DG4 4.2 0.1 1.0
C4 A:DG8 4.2 0.1 1.0
H4' A:DT7 4.2 0.2 1.0
H2'' A:DT5 4.2 0.2 1.0
O4' A:DT6 4.3 0.1 1.0
N1 A:DG4 4.3 0.1 1.0
C6 A:DG8 4.5 0.1 1.0
O4' A:DT7 4.6 0.1 1.0
H1' A:DG8 4.7 0.2 1.0
C1' A:DG8 4.7 0.1 1.0
O4' A:DG8 4.8 0.1 1.0
O6 A:DG8 4.8 0.1 1.0

Phosphorus binding site 7 out of 20 in 1a6h

Go back to Phosphorus Binding Sites List in 1a6h
Phosphorus binding site 7 out of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 7 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P8

b:0.1
occ:1.00
P A:DG8 0.0 0.1 1.0
OP2 A:DG8 1.5 0.3 1.0
OP1 A:DG8 1.5 0.2 1.0
O3' A:DT7 1.6 0.2 1.0
O5' A:DG8 1.6 0.2 1.0
C5' A:DG8 2.7 0.2 1.0
H5'' A:DG8 2.7 0.2 1.0
C3' A:DT7 2.7 0.1 1.0
H4' A:DT7 2.8 0.2 1.0
H5' A:DG8 3.2 0.2 1.0
C4' A:DT7 3.3 0.1 1.0
H1' A:DT7 3.4 0.2 1.0
H2'' A:DT7 3.4 0.2 1.0
C2' A:DT7 3.5 0.1 1.0
H3' A:DT7 3.5 0.2 1.0
C1' A:DT7 3.7 0.1 1.0
O4' A:DT7 3.8 0.1 1.0
O4' A:DG8 3.8 0.1 1.0
C4' A:DG8 3.9 0.1 1.0
H22 A:DG8 3.9 0.2 1.0
N3 A:DG8 4.0 0.1 1.0
N2 A:DG8 4.3 0.1 1.0
H2' A:DG8 4.4 0.2 1.0
H4' A:DG8 4.4 0.2 1.0
C2 A:DG8 4.4 0.1 1.0
H2' A:DT7 4.5 0.2 1.0
C5' A:DT7 4.7 0.1 1.0
H5' A:DT7 4.8 0.2 1.0
C4 A:DG8 4.8 0.1 1.0
H21 A:DG8 4.8 0.1 1.0
C1' A:DG8 4.9 0.1 1.0
H3' B:DG10 5.0 0.2 1.0

Phosphorus binding site 8 out of 20 in 1a6h

Go back to Phosphorus Binding Sites List in 1a6h
Phosphorus binding site 8 out of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 8 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P9

b:0.1
occ:1.00
P A:DC9 0.0 0.1 1.0
OP2 A:DC9 1.5 0.2 1.0
OP1 A:DC9 1.5 0.2 1.0
O5' A:DC9 1.6 0.1 1.0
O3' A:DG8 1.6 0.1 1.0
C3' A:DG8 2.6 0.1 1.0
C5' A:DC9 2.7 0.1 1.0
H3' A:DG8 2.8 0.2 1.0
H4' A:DC9 2.8 0.1 1.0
H2'' A:DG8 2.9 0.2 1.0
H5' A:DC9 2.9 0.2 1.0
C4' A:DC9 3.2 0.1 1.0
C2' A:DG8 3.3 0.1 1.0
H5' B:DC9 3.5 0.2 1.0
H5'' A:DC9 3.6 0.2 1.0
H1' A:DG8 3.7 0.2 1.0
O5' B:DC9 3.8 0.1 1.0
O4' A:DC9 3.9 0.1 1.0
OP2 B:DC9 3.9 0.2 1.0
C5' B:DC9 4.0 0.1 1.0
C4' A:DG8 4.0 0.1 1.0
C1' A:DG8 4.0 0.1 1.0
H5'' B:DC9 4.1 0.2 1.0
H2' A:DG8 4.1 0.2 1.0
H4' A:DG8 4.2 0.2 1.0
P B:DC9 4.4 0.1 1.0
C3' A:DC9 4.4 0.1 1.0
H3' A:DC9 4.5 0.2 1.0
H6 A:DC9 4.7 0.2 1.0
O4' A:DG8 4.7 0.1 1.0

Phosphorus binding site 9 out of 20 in 1a6h

Go back to Phosphorus Binding Sites List in 1a6h
Phosphorus binding site 9 out of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 9 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P10

b:0.1
occ:1.00
P A:DG10 0.0 0.1 1.0
OP1 A:DG10 1.5 0.2 1.0
OP2 A:DG10 1.5 0.2 1.0
O3' A:DC9 1.6 0.1 1.0
O5' A:DG10 1.6 0.1 1.0
C3' A:DC9 2.6 0.1 1.0
H3' A:DC9 2.6 0.2 1.0
C5' A:DG10 2.7 0.2 1.0
H5'' A:DG10 2.9 0.3 1.0
H5' A:DG10 3.0 0.4 1.0
H2'' A:DC9 3.0 0.2 1.0
C2' A:DC9 3.3 0.1 1.0
H1' A:DC9 3.7 0.1 1.0
C4' A:DC9 3.9 0.1 1.0
C4' A:DG10 4.0 0.1 1.0
H4' A:DC9 4.0 0.1 1.0
C1' A:DC9 4.1 0.1 1.0
H2' A:DC9 4.2 0.2 1.0
H4' A:DG10 4.2 0.2 1.0
O4' A:DG10 4.4 0.1 1.0
O4' A:DC9 4.6 0.1 1.0
H5' A:DC9 4.9 0.2 1.0

Phosphorus binding site 10 out of 20 in 1a6h

Go back to Phosphorus Binding Sites List in 1a6h
Phosphorus binding site 10 out of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 10 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P11

b:0.1
occ:1.00
P A:DG11 0.0 0.1 1.0
OP2 A:DG11 1.5 0.3 1.0
OP1 A:DG11 1.5 0.2 1.0
O3' A:DG10 1.6 0.1 1.0
O5' A:DG11 1.6 0.2 1.0
C5' A:DG11 2.6 0.2 1.0
H2'' A:DG10 2.7 0.2 1.0
C3' A:DG10 2.7 0.1 1.0
H5' A:DG11 2.8 0.3 1.0
H5'' A:DG11 2.9 0.2 1.0
H4' A:DG10 3.0 0.2 1.0
C2' A:DG10 3.1 0.1 1.0
H1' A:DG10 3.3 0.2 1.0
C4' A:DG10 3.4 0.1 1.0
H3' A:DG10 3.6 0.2 1.0
C1' A:DG10 3.7 0.1 1.0
C4' A:DG11 4.0 0.2 1.0
H2' A:DG11 4.0 0.2 1.0
H2' A:DG10 4.1 0.2 1.0
O4' A:DG10 4.2 0.1 1.0
O4' A:DG11 4.3 0.2 1.0
H3' A:DG11 4.6 0.3 1.0
H5' A:DG10 4.6 0.4 1.0
H8 A:DG11 4.6 0.2 1.0
C5' A:DG10 4.6 0.2 1.0
C3' A:DG11 4.7 0.2 1.0
H4' A:DG11 4.8 0.3 1.0
C2' A:DG11 4.8 0.2 1.0
N9 A:DG10 5.0 0.1 1.0

Reference:

A.Kettani, R.A.Kumar, D.J.Patel. Solution Structure of A Dna Quadruplex Containing the Fragile X Syndrome Triplet Repeat. J.Mol.Biol. V. 254 638 1995.
ISSN: ISSN 0022-2836
PubMed: 7500339
DOI: 10.1006/JMBI.1995.0644
Page generated: Fri Sep 25 12:19:47 2020

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy