Phosphorus in PDB 1a6h: Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures

Phosphorus Binding Sites:

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Binding sites:

The binding sites of Phosphorus atom in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures (pdb code 1a6h). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 20 binding sites of Phosphorus where determined in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures, PDB code: 1a6h:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Phosphorus binding site 1 out of 20 in 1a6h

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Phosphorus binding site 1 out of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P2

b:0.1
occ:1.00
P A:DC2 0.0 0.1 1.0
OP1 A:DC2 1.5 0.2 1.0
OP2 A:DC2 1.5 0.1 1.0
O3' A:DG1 1.6 0.1 1.0
O5' A:DC2 1.6 0.2 1.0
C3' A:DG1 2.6 0.1 1.0
C5' A:DC2 2.7 0.2 1.0
H3' A:DG1 2.7 0.2 1.0
H5' A:DC2 2.9 0.2 1.0
H2'' A:DG1 2.9 0.2 1.0
H5'' A:DC2 3.0 0.3 1.0
C2' A:DG1 3.3 0.1 1.0
H1' A:DG1 3.8 0.2 1.0
C4' A:DC2 4.0 0.1 1.0
C4' A:DG1 4.0 0.1 1.0
H2' A:DG1 4.1 0.2 1.0
C1' A:DG1 4.1 0.1 1.0
H3' A:DC2 4.1 0.2 1.0
H4' A:DG1 4.1 0.2 1.0
O4' A:DC2 4.4 0.1 1.0
O4' A:DG1 4.6 0.1 1.0
C3' A:DC2 4.7 0.1 1.0
H4' A:DC2 4.9 0.1 1.0
H6 A:DC2 5.0 0.1 1.0

Phosphorus binding site 2 out of 20 in 1a6h

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Phosphorus binding site 2 out of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P3

b:0.2
occ:1.00
P A:DG3 0.0 0.2 1.0
OP2 A:DG3 1.5 0.2 1.0
OP1 A:DG3 1.5 0.3 1.0
O3' A:DC2 1.6 0.2 1.0
O5' A:DG3 1.6 0.2 1.0
C5' A:DG3 2.7 0.1 1.0
C3' A:DC2 2.7 0.1 1.0
HO5' B:DG1 2.7 0.6 1.0
H2'' A:DC2 2.7 0.2 1.0
H4' A:DG3 2.8 0.1 1.0
H3' A:DC2 2.9 0.2 1.0
H5' A:DG3 2.9 0.2 1.0
C4' A:DG3 3.2 0.1 1.0
C2' A:DC2 3.2 0.1 1.0
O5' B:DG1 3.5 0.2 1.0
H5'' A:DG3 3.6 0.2 1.0
O4' A:DG3 3.8 0.2 1.0
H2' A:DC2 3.9 0.2 1.0
C4' A:DC2 4.0 0.1 1.0
H4' A:DC2 4.1 0.1 1.0
H1' A:DC2 4.2 0.2 1.0
C1' A:DC2 4.3 0.1 1.0
C3' A:DG3 4.6 0.1 1.0
C5' B:DG1 4.6 0.2 1.0
H5' B:DG1 4.6 0.3 1.0
H3' A:DG3 4.8 0.2 1.0
H8 A:DG3 4.8 0.1 1.0
O4' A:DC2 4.9 0.1 1.0
H5'' A:DC2 4.9 0.3 1.0
H5'' B:DG1 4.9 0.2 1.0

Phosphorus binding site 3 out of 20 in 1a6h

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Phosphorus binding site 3 out of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4

b:0.1
occ:1.00
P A:DG4 0.0 0.1 1.0
OP2 A:DG4 1.5 0.1 1.0
OP1 A:DG4 1.5 0.1 1.0
O3' A:DG3 1.6 0.1 1.0
O5' A:DG4 1.6 0.1 1.0
H2'' A:DG3 2.7 0.2 1.0
C3' A:DG3 2.7 0.1 1.0
C5' A:DG4 2.7 0.1 1.0
H5'' A:DG4 2.9 0.2 1.0
C2' A:DG3 3.1 0.1 1.0
H3' A:DG3 3.1 0.2 1.0
H1' A:DG3 3.3 0.2 1.0
O4' A:DG4 3.5 0.1 1.0
H5' A:DG4 3.6 0.2 1.0
C4' A:DG4 3.6 0.1 1.0
C1' A:DG3 3.7 0.1 1.0
H4' A:DG4 3.8 0.1 1.0
C4' A:DG3 4.0 0.1 1.0
H2' A:DG3 4.1 0.1 1.0
H4' A:DG3 4.2 0.1 1.0
O4' A:DG3 4.5 0.2 1.0
H8 A:DG4 4.7 0.1 1.0
C1' A:DG4 4.8 0.1 1.0
N3 A:DG3 4.9 0.1 1.0
N9 A:DG3 4.9 0.1 1.0

Phosphorus binding site 4 out of 20 in 1a6h

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Phosphorus binding site 4 out of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P5

b:0.2
occ:1.00
P A:DT5 0.0 0.2 1.0
OP1 A:DT5 1.5 0.2 1.0
OP2 A:DT5 1.5 0.2 1.0
O5' A:DT5 1.6 0.2 1.0
O3' A:DG4 1.6 0.1 1.0
C3' A:DG4 2.7 0.1 1.0
H3' A:DG4 2.7 0.2 1.0
C5' A:DT5 2.7 0.2 1.0
H5'' A:DT5 2.7 0.2 1.0
H2'' A:DG4 2.8 0.2 1.0
H3' A:DT5 2.9 0.2 1.0
C2' A:DG4 3.2 0.1 1.0
H5' A:DT5 3.4 0.3 1.0
H2' A:DG4 3.6 0.2 1.0
C4' A:DT5 3.8 0.1 1.0
OP2 A:DT6 3.8 0.1 1.0
C3' A:DT5 3.9 0.1 1.0
O4' A:DT5 4.0 0.1 1.0
C4' A:DG4 4.1 0.1 1.0
O2 A:DT5 4.1 0.2 1.0
H4' A:DG4 4.3 0.1 1.0
C1' A:DG4 4.5 0.1 1.0
H1' A:DG4 4.6 0.1 1.0
O3' A:DT5 4.7 0.1 1.0
C2 A:DT5 4.7 0.1 1.0
H5' A:DG4 4.7 0.2 1.0
H4' A:DT5 4.8 0.2 1.0
C2' A:DT5 4.8 0.1 1.0
H72 A:DT6 4.8 0.3 1.0
P A:DT6 4.9 0.1 1.0
C1' A:DT5 4.9 0.1 1.0
H2' A:DT5 4.9 0.2 1.0
O4' A:DG4 4.9 0.1 1.0

Phosphorus binding site 5 out of 20 in 1a6h

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Phosphorus binding site 5 out of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P6

b:0.1
occ:1.00
P A:DT6 0.0 0.1 1.0
OP2 A:DT6 1.5 0.1 1.0
OP1 A:DT6 1.5 0.2 1.0
O5' A:DT6 1.6 0.1 1.0
O3' A:DT5 1.6 0.1 1.0
H6 A:DT6 2.2 0.2 1.0
H5' A:DT6 2.5 0.2 1.0
H3' A:DT5 2.5 0.2 1.0
C5' A:DT6 2.6 0.1 1.0
C3' A:DT5 2.6 0.1 1.0
H72 A:DT6 2.7 0.3 1.0
H2' A:DG4 2.7 0.2 1.0
H71 A:DT6 2.8 0.2 1.0
C7 A:DT6 3.2 0.2 1.0
H5'' A:DT6 3.2 0.2 1.0
C6 A:DT6 3.2 0.2 1.0
H2'' A:DG4 3.3 0.2 1.0
H2' A:DT6 3.4 0.2 1.0
H2' A:DT5 3.4 0.2 1.0
C2' A:DG4 3.5 0.1 1.0
C2' A:DT5 3.5 0.1 1.0
H5'' A:DT5 3.6 0.2 1.0
C8 A:DG4 3.6 0.1 1.0
H2'' A:DT5 3.7 0.2 1.0
N9 A:DG4 3.7 0.1 1.0
C4' A:DT6 3.7 0.1 1.0
C5 A:DT6 3.7 0.2 1.0
N7 A:DG4 3.8 0.1 1.0
OP2 A:DT5 3.8 0.2 1.0
H3' A:DT6 3.9 0.2 1.0
H8 A:DG4 3.9 0.1 1.0
C4 A:DG4 3.9 0.1 1.0
C5 A:DG4 3.9 0.1 1.0
C4' A:DT5 4.0 0.1 1.0
C2' A:DT6 4.1 0.1 1.0
C3' A:DT6 4.1 0.1 1.0
O4' A:DT6 4.2 0.1 1.0
H73 A:DT6 4.2 0.3 1.0
C1' A:DG4 4.3 0.1 1.0
N1 A:DT6 4.3 0.2 1.0
C5' A:DT5 4.3 0.2 1.0
C1' A:DT6 4.4 0.1 1.0
H4' A:DT5 4.5 0.2 1.0
H3' A:DG4 4.5 0.2 1.0
N3 A:DG4 4.6 0.1 1.0
H1' A:DG4 4.6 0.1 1.0
C3' A:DG4 4.6 0.1 1.0
H4' A:DT6 4.7 0.1 1.0
C6 A:DG4 4.7 0.1 1.0
H21 B:DG1 4.7 0.2 1.0
O5' A:DT5 4.8 0.2 1.0
P A:DT5 4.9 0.2 1.0
C1' A:DT5 4.9 0.1 1.0
O4' A:DT5 4.9 0.1 1.0

Phosphorus binding site 6 out of 20 in 1a6h

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Phosphorus binding site 6 out of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P7

b:0.1
occ:1.00
P A:DT7 0.0 0.1 1.0
OP2 A:DT7 1.5 0.2 1.0
OP1 A:DT7 1.5 0.2 1.0
O3' A:DT6 1.6 0.1 1.0
O5' A:DT7 1.6 0.1 1.0
H2'' A:DT6 2.5 0.1 1.0
C5' A:DT7 2.7 0.1 1.0
H5'' A:DT7 2.7 0.1 1.0
C3' A:DT6 2.8 0.1 1.0
H5' A:DT7 2.9 0.2 1.0
H21 A:DG4 2.9 0.2 1.0
N7 A:DG8 3.0 0.1 1.0
C8 A:DG8 3.1 0.1 1.0
C2' A:DT6 3.1 0.1 1.0
H8 A:DG8 3.1 0.1 1.0
H3' A:DT6 3.2 0.2 1.0
H1' A:DT6 3.3 0.2 1.0
N2 A:DG4 3.5 0.1 1.0
C5 A:DG8 3.7 0.1 1.0
C1' A:DT6 3.8 0.1 1.0
N9 A:DG8 3.8 0.1 1.0
H22 A:DG4 3.8 0.1 1.0
H4' A:DT6 3.9 0.1 1.0
H1 A:DG4 3.9 0.1 1.0
H2' A:DT6 3.9 0.2 1.0
C4' A:DT6 4.0 0.1 1.0
C4' A:DT7 4.1 0.1 1.0
C2 A:DG4 4.2 0.1 1.0
C4 A:DG8 4.2 0.1 1.0
H4' A:DT7 4.2 0.2 1.0
H2'' A:DT5 4.2 0.2 1.0
O4' A:DT6 4.3 0.1 1.0
N1 A:DG4 4.3 0.1 1.0
C6 A:DG8 4.5 0.1 1.0
O4' A:DT7 4.6 0.1 1.0
H1' A:DG8 4.7 0.2 1.0
C1' A:DG8 4.7 0.1 1.0
O4' A:DG8 4.8 0.1 1.0
O6 A:DG8 4.8 0.1 1.0

Phosphorus binding site 7 out of 20 in 1a6h

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Phosphorus binding site 7 out of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 7 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P8

b:0.1
occ:1.00
P A:DG8 0.0 0.1 1.0
OP2 A:DG8 1.5 0.3 1.0
OP1 A:DG8 1.5 0.2 1.0
O3' A:DT7 1.6 0.2 1.0
O5' A:DG8 1.6 0.2 1.0
C5' A:DG8 2.7 0.2 1.0
H5'' A:DG8 2.7 0.2 1.0
C3' A:DT7 2.7 0.1 1.0
H4' A:DT7 2.8 0.2 1.0
H5' A:DG8 3.2 0.2 1.0
C4' A:DT7 3.3 0.1 1.0
H1' A:DT7 3.4 0.2 1.0
H2'' A:DT7 3.4 0.2 1.0
C2' A:DT7 3.5 0.1 1.0
H3' A:DT7 3.5 0.2 1.0
C1' A:DT7 3.7 0.1 1.0
O4' A:DT7 3.8 0.1 1.0
O4' A:DG8 3.8 0.1 1.0
C4' A:DG8 3.9 0.1 1.0
H22 A:DG8 3.9 0.2 1.0
N3 A:DG8 4.0 0.1 1.0
N2 A:DG8 4.3 0.1 1.0
H2' A:DG8 4.4 0.2 1.0
H4' A:DG8 4.4 0.2 1.0
C2 A:DG8 4.4 0.1 1.0
H2' A:DT7 4.5 0.2 1.0
C5' A:DT7 4.7 0.1 1.0
H5' A:DT7 4.8 0.2 1.0
C4 A:DG8 4.8 0.1 1.0
H21 A:DG8 4.8 0.1 1.0
C1' A:DG8 4.9 0.1 1.0
H3' B:DG10 5.0 0.2 1.0

Phosphorus binding site 8 out of 20 in 1a6h

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Phosphorus binding site 8 out of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 8 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P9

b:0.1
occ:1.00
P A:DC9 0.0 0.1 1.0
OP2 A:DC9 1.5 0.2 1.0
OP1 A:DC9 1.5 0.2 1.0
O5' A:DC9 1.6 0.1 1.0
O3' A:DG8 1.6 0.1 1.0
C3' A:DG8 2.6 0.1 1.0
C5' A:DC9 2.7 0.1 1.0
H3' A:DG8 2.8 0.2 1.0
H4' A:DC9 2.8 0.1 1.0
H2'' A:DG8 2.9 0.2 1.0
H5' A:DC9 2.9 0.2 1.0
C4' A:DC9 3.2 0.1 1.0
C2' A:DG8 3.3 0.1 1.0
H5' B:DC9 3.5 0.2 1.0
H5'' A:DC9 3.6 0.2 1.0
H1' A:DG8 3.7 0.2 1.0
O5' B:DC9 3.8 0.1 1.0
O4' A:DC9 3.9 0.1 1.0
OP2 B:DC9 3.9 0.2 1.0
C5' B:DC9 4.0 0.1 1.0
C4' A:DG8 4.0 0.1 1.0
C1' A:DG8 4.0 0.1 1.0
H5'' B:DC9 4.1 0.2 1.0
H2' A:DG8 4.1 0.2 1.0
H4' A:DG8 4.2 0.2 1.0
P B:DC9 4.4 0.1 1.0
C3' A:DC9 4.4 0.1 1.0
H3' A:DC9 4.5 0.2 1.0
H6 A:DC9 4.7 0.2 1.0
O4' A:DG8 4.7 0.1 1.0

Phosphorus binding site 9 out of 20 in 1a6h

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Phosphorus binding site 9 out of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 9 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P10

b:0.1
occ:1.00
P A:DG10 0.0 0.1 1.0
OP1 A:DG10 1.5 0.2 1.0
OP2 A:DG10 1.5 0.2 1.0
O3' A:DC9 1.6 0.1 1.0
O5' A:DG10 1.6 0.1 1.0
C3' A:DC9 2.6 0.1 1.0
H3' A:DC9 2.6 0.2 1.0
C5' A:DG10 2.7 0.2 1.0
H5'' A:DG10 2.9 0.3 1.0
H5' A:DG10 3.0 0.4 1.0
H2'' A:DC9 3.0 0.2 1.0
C2' A:DC9 3.3 0.1 1.0
H1' A:DC9 3.7 0.1 1.0
C4' A:DC9 3.9 0.1 1.0
C4' A:DG10 4.0 0.1 1.0
H4' A:DC9 4.0 0.1 1.0
C1' A:DC9 4.1 0.1 1.0
H2' A:DC9 4.2 0.2 1.0
H4' A:DG10 4.2 0.2 1.0
O4' A:DG10 4.4 0.1 1.0
O4' A:DC9 4.6 0.1 1.0
H5' A:DC9 4.9 0.2 1.0

Phosphorus binding site 10 out of 20 in 1a6h

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Phosphorus binding site 10 out of 20 in the Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 10 of Dna Quadruplex Containing Gcgc Tetrad, uc(Nmr), 4 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P11

b:0.1
occ:1.00
P A:DG11 0.0 0.1 1.0
OP2 A:DG11 1.5 0.3 1.0
OP1 A:DG11 1.5 0.2 1.0
O3' A:DG10 1.6 0.1 1.0
O5' A:DG11 1.6 0.2 1.0
C5' A:DG11 2.6 0.2 1.0
H2'' A:DG10 2.7 0.2 1.0
C3' A:DG10 2.7 0.1 1.0
H5' A:DG11 2.8 0.3 1.0
H5'' A:DG11 2.9 0.2 1.0
H4' A:DG10 3.0 0.2 1.0
C2' A:DG10 3.1 0.1 1.0
H1' A:DG10 3.3 0.2 1.0
C4' A:DG10 3.4 0.1 1.0
H3' A:DG10 3.6 0.2 1.0
C1' A:DG10 3.7 0.1 1.0
C4' A:DG11 4.0 0.2 1.0
H2' A:DG11 4.0 0.2 1.0
H2' A:DG10 4.1 0.2 1.0
O4' A:DG10 4.2 0.1 1.0
O4' A:DG11 4.3 0.2 1.0
H3' A:DG11 4.6 0.3 1.0
H5' A:DG10 4.6 0.4 1.0
H8 A:DG11 4.6 0.2 1.0
C5' A:DG10 4.6 0.2 1.0
C3' A:DG11 4.7 0.2 1.0
H4' A:DG11 4.8 0.3 1.0
C2' A:DG11 4.8 0.2 1.0
N9 A:DG10 5.0 0.1 1.0

Reference:

A.Kettani, R.A.Kumar, D.J.Patel. Solution Structure of A Dna Quadruplex Containing the Fragile X Syndrome Triplet Repeat. J.Mol.Biol. V. 254 638 1995.
ISSN: ISSN 0022-2836
PubMed: 7500339
DOI: 10.1006/JMBI.1995.0644
Page generated: Fri Sep 25 12:19:47 2020

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