Phosphorus in PDB 1a6e: Thermosome-Mg-Adp-ALF3 Complex

Protein crystallography data

The structure of Thermosome-Mg-Adp-ALF3 Complex, PDB code: 1a6e was solved by L.Ditzel, J.Loewe, D.Stock, K.-O.Stetter, H.Huber, R.Huber, S.Steinbacher, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 8.00 / 3.20
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 167.800, 167.800, 202.300, 90.00, 90.00, 90.00
R / Rfree (%) 18.1 / 28.5

Phosphorus Binding Sites:

The binding sites of Phosphorus atom in the Thermosome-Mg-Adp-ALF3 Complex (pdb code 1a6e). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 4 binding sites of Phosphorus where determined in the Thermosome-Mg-Adp-ALF3 Complex, PDB code: 1a6e:
Jump to Phosphorus binding site number: 1; 2; 3; 4;

Phosphorus binding site 1 out of 4 in 1a6e

Go back to Phosphorus Binding Sites List in 1a6e
Phosphorus binding site 1 out of 4 in the Thermosome-Mg-Adp-ALF3 Complex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Thermosome-Mg-Adp-ALF3 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P898

b:33.0
occ:1.00
PB A:ADP898 0.0 33.0 1.0
O3B A:ADP898 1.5 32.8 1.0
O1B A:ADP898 1.5 33.5 1.0
O3A A:ADP898 1.6 33.9 1.0
O2B A:ADP898 1.6 32.9 1.0
PA A:ADP898 2.9 31.4 1.0
H A:GLY95 3.1 0.0 0.0
F1 A:AF3899 3.1 35.6 1.0
AL A:AF3899 3.1 30.3 1.0
O1A A:ADP898 3.2 40.8 1.0
H A:THR97 3.2 0.0 0.0
H A:THR98 3.2 0.0 0.0
F3 A:AF3899 3.6 33.6 1.0
OD1 A:ASP94 3.7 28.0 1.0
CA A:GLY95 3.7 15.7 1.0
O5' A:ADP898 3.7 33.1 1.0
MG A:MG897 3.7 36.8 1.0
C5' A:ADP898 3.7 30.3 1.0
N A:GLY95 3.7 14.0 1.0
HG1 A:THR97 3.8 0.0 0.0
CB A:THR97 3.9 10.8 1.0
O2A A:ADP898 4.0 28.4 1.0
N A:THR97 4.0 9.1 1.0
C A:GLY95 4.0 14.4 1.0
OG1 A:THR97 4.0 11.5 1.0
F2 A:AF3899 4.1 27.3 1.0
OG1 A:THR98 4.1 25.4 1.0
H A:THR96 4.2 0.0 0.0
N A:THR98 4.2 19.6 1.0
N A:THR96 4.3 9.7 1.0
CD1 A:LEU42 4.3 8.0 1.0
CA A:THR97 4.4 11.7 1.0
O A:GLY95 4.6 17.0 1.0
HG1 A:THR98 4.7 0.0 0.0
CG A:ASP94 4.8 21.1 1.0
C A:THR97 4.9 16.1 1.0
CB A:THR98 4.9 20.2 1.0
C A:THR96 5.0 11.1 1.0

Phosphorus binding site 2 out of 4 in 1a6e

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Phosphorus binding site 2 out of 4 in the Thermosome-Mg-Adp-ALF3 Complex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Thermosome-Mg-Adp-ALF3 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P898

b:31.4
occ:1.00
PA A:ADP898 0.0 31.4 1.0
O2A A:ADP898 1.5 28.4 1.0
O1A A:ADP898 1.5 40.8 1.0
O3A A:ADP898 1.6 33.9 1.0
O5' A:ADP898 1.6 33.1 1.0
C5' A:ADP898 2.6 30.3 1.0
H A:GLY43 2.8 0.0 0.0
PB A:ADP898 2.9 33.0 1.0
O2B A:ADP898 3.1 32.9 1.0
MG A:MG897 3.7 36.8 1.0
N A:GLY43 3.7 18.8 1.0
F1 A:AF3899 3.8 35.6 1.0
O1B A:ADP898 3.8 33.5 1.0
CD1 A:LEU42 3.9 8.0 1.0
O3B A:ADP898 3.9 32.8 1.0
C4' A:ADP898 4.0 27.4 1.0
F3 A:AF3899 4.1 33.6 1.0
O4' A:ADP898 4.2 28.5 1.0
AL A:AF3899 4.4 30.3 1.0
CA A:GLY43 4.4 22.3 1.0
CA A:LEU42 4.6 16.9 1.0
C A:LEU42 4.7 17.7 1.0
O A:THR41 4.7 26.5 1.0
CG A:LEU42 4.8 9.7 1.0
H A:GLY161 4.9 0.0 0.0

Phosphorus binding site 3 out of 4 in 1a6e

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Phosphorus binding site 3 out of 4 in the Thermosome-Mg-Adp-ALF3 Complex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Thermosome-Mg-Adp-ALF3 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P998

b:56.2
occ:1.00
PB B:ADP998 0.0 56.2 1.0
O3B B:ADP998 1.5 57.7 1.0
O1B B:ADP998 1.5 63.6 1.0
O3A B:ADP998 1.6 51.9 1.0
O2B B:ADP998 1.6 57.2 1.0
PA B:ADP998 2.9 47.6 1.0
F1 B:AF3999 3.1 69.1 1.0
AL B:AF3999 3.2 68.6 1.0
O1A B:ADP998 3.2 52.2 1.0
H B:THR97 3.4 0.0 0.0
H B:GLY94 3.4 0.0 0.0
H B:THR96 3.5 0.0 0.0
MG B:MG997 3.7 59.8 1.0
CA B:GLY94 3.8 27.4 1.0
O5' B:ADP998 3.9 49.3 1.0
N B:GLY94 3.9 33.2 1.0
F3 B:AF3999 3.9 67.0 1.0
O2A B:ADP998 3.9 45.7 1.0
CB B:THR96 3.9 17.7 1.0
C5' B:ADP998 4.0 46.5 1.0
HG1 B:THR96 4.0 0.0 0.0
F2 B:AF3999 4.0 67.3 1.0
CD1 B:LEU41 4.1 17.3 1.0
N B:THR97 4.2 22.4 1.0
OG1 B:THR97 4.2 13.2 1.0
N B:THR96 4.2 19.1 1.0
C B:GLY94 4.3 28.7 1.0
H B:THR95 4.3 0.0 0.0
OD1 B:ASP93 4.4 53.2 1.0
OG1 B:THR96 4.4 18.8 1.0
N B:THR95 4.5 28.2 1.0
CA B:THR96 4.5 18.5 1.0
CB B:THR97 4.7 9.6 1.0
CG2 B:THR96 4.8 18.7 1.0
C B:THR96 4.8 22.9 1.0
HG1 B:THR97 4.9 0.0 0.0
O B:GLY94 4.9 29.5 1.0

Phosphorus binding site 4 out of 4 in 1a6e

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Phosphorus binding site 4 out of 4 in the Thermosome-Mg-Adp-ALF3 Complex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Thermosome-Mg-Adp-ALF3 Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P998

b:47.6
occ:1.00
PA B:ADP998 0.0 47.6 1.0
O2A B:ADP998 1.5 45.7 1.0
O1A B:ADP998 1.5 52.2 1.0
O5' B:ADP998 1.6 49.3 1.0
O3A B:ADP998 1.6 51.9 1.0
H B:GLY42 2.5 0.0 0.0
C5' B:ADP998 2.6 46.5 1.0
PB B:ADP998 2.9 56.2 1.0
OG B:SER162 3.2 48.4 1.0
O2B B:ADP998 3.3 57.2 1.0
N B:GLY42 3.4 25.4 1.0
CB B:SER162 3.6 38.5 1.0
O1B B:ADP998 3.6 63.6 1.0
MG B:MG997 3.6 59.8 1.0
HG B:SER162 3.6 0.0 0.0
CD1 B:LEU41 3.8 17.3 1.0
C4' B:ADP998 3.8 41.6 1.0
F1 B:AF3999 4.0 69.1 1.0
O3B B:ADP998 4.1 57.7 1.0
CA B:LEU41 4.2 15.2 1.0
F3 B:AF3999 4.2 67.0 1.0
O B:SER40 4.3 26.4 1.0
CA B:GLY42 4.3 26.9 1.0
C B:LEU41 4.3 19.5 1.0
O4' B:ADP998 4.5 39.7 1.0
AL B:AF3999 4.5 68.6 1.0
CG B:LEU41 4.6 10.6 1.0
HG1 B:THR96 4.6 0.0 0.0
O B:GLY42 4.8 26.2 1.0
C3' B:ADP998 4.9 40.6 1.0
CB B:LEU41 4.9 12.7 1.0
C B:GLY42 5.0 26.3 1.0

Reference:

L.Ditzel, J.Lowe, D.Stock, K.O.Stetter, H.Huber, R.Huber, S.Steinbacher. Crystal Structure of the Thermosome, the Archaeal Chaperonin and Homolog of Cct. Cell(Cambridge,Mass.) V. 93 125 1998.
ISSN: ISSN 0092-8674
PubMed: 9546398
DOI: 10.1016/S0092-8674(00)81152-6
Page generated: Fri Sep 25 12:19:17 2020

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