Phosphorus in PDB 1a6b: uc(Nmr) Structure of the Complex Between the Zinc Finger Protein NCP10 of Moloney Murine Leukemia Virus and A Sequence of the Psi-Packaging Domain of Hiv-1, 20 Structures

Phosphorus Binding Sites:

The binding sites of Phosphorus atom in the uc(Nmr) Structure of the Complex Between the Zinc Finger Protein NCP10 of Moloney Murine Leukemia Virus and A Sequence of the Psi-Packaging Domain of Hiv-1, 20 Structures (pdb code 1a6b). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 4 binding sites of Phosphorus where determined in the uc(Nmr) Structure of the Complex Between the Zinc Finger Protein NCP10 of Moloney Murine Leukemia Virus and A Sequence of the Psi-Packaging Domain of Hiv-1, 20 Structures, PDB code: 1a6b:
Jump to Phosphorus binding site number: 1; 2; 3; 4;

Phosphorus binding site 1 out of 4 in 1a6b

Go back to Phosphorus Binding Sites List in 1a6b
Phosphorus binding site 1 out of 4 in the uc(Nmr) Structure of the Complex Between the Zinc Finger Protein NCP10 of Moloney Murine Leukemia Virus and A Sequence of the Psi-Packaging Domain of Hiv-1, 20 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of uc(Nmr) Structure of the Complex Between the Zinc Finger Protein NCP10 of Moloney Murine Leukemia Virus and A Sequence of the Psi-Packaging Domain of Hiv-1, 20 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P2

b:0.0
occ:1.00
P A:DC2 0.0 0.0 1.0
OP2 A:DC2 1.5 0.0 1.0
OP1 A:DC2 1.5 0.0 1.0
O3' A:DA1 1.6 0.0 1.0
O5' A:DC2 1.6 0.0 1.0
C3' A:DA1 2.7 0.0 1.0
C5' A:DC2 2.7 0.0 1.0
H3' A:DA1 2.7 0.0 1.0
H5' A:DC2 3.0 0.0 1.0
H4' A:DC2 3.0 0.0 1.0
HE2 B:LYS42 3.2 0.0 1.0
HE3 B:LYS42 3.2 0.0 1.0
C4' A:DC2 3.2 0.0 1.0
H5'' A:DC2 3.6 0.0 1.0
HD1 B:TYR28 3.6 0.0 1.0
O4' A:DC2 3.6 0.0 1.0
HD2 B:LYS42 3.6 0.0 1.0
H4' A:DA1 3.6 0.0 1.0
CE B:LYS42 3.6 0.0 1.0
H2'' A:DA1 3.7 0.0 1.0
C2' A:DA1 3.7 0.0 1.0
C4' A:DA1 3.8 0.0 1.0
HB3 B:ALA36 3.9 0.0 1.0
H1' A:DA1 4.1 0.0 1.0
CD B:LYS42 4.2 0.0 1.0
HO5' A:DA1 4.3 0.0 1.0
C1' A:DA1 4.4 0.0 1.0
HE1 B:TYR28 4.5 0.0 1.0
CD1 B:TYR28 4.5 0.0 1.0
H2' A:DA1 4.6 0.0 1.0
O4' A:DA1 4.6 0.0 1.0
H1' A:DC2 4.7 0.0 1.0
C3' A:DC2 4.7 0.0 1.0
HH21 B:ARG44 4.7 0.0 1.0
C1' A:DC2 4.8 0.0 1.0
O5' A:DA1 4.9 0.0 1.0
HD3 B:LYS42 4.9 0.0 1.0
C5' A:DA1 4.9 0.0 1.0
CB B:ALA36 4.9 0.0 1.0
NZ B:LYS42 4.9 0.0 1.0
HZ3 B:LYS42 5.0 0.0 1.0
CE1 B:TYR28 5.0 0.0 1.0
HB2 B:ALA27 5.0 0.0 1.0

Phosphorus binding site 2 out of 4 in 1a6b

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Phosphorus binding site 2 out of 4 in the uc(Nmr) Structure of the Complex Between the Zinc Finger Protein NCP10 of Moloney Murine Leukemia Virus and A Sequence of the Psi-Packaging Domain of Hiv-1, 20 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of uc(Nmr) Structure of the Complex Between the Zinc Finger Protein NCP10 of Moloney Murine Leukemia Virus and A Sequence of the Psi-Packaging Domain of Hiv-1, 20 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P3

b:0.0
occ:1.00
P A:DG3 0.0 0.0 1.0
OP1 A:DG3 1.5 0.0 1.0
OP2 A:DG3 1.5 0.0 1.0
O3' A:DC2 1.6 0.0 1.0
O5' A:DG3 1.6 0.0 1.0
C5' A:DG3 2.6 0.0 1.0
C3' A:DC2 2.6 0.0 1.0
H3' A:DC2 2.8 0.0 1.0
H5'' A:DG3 2.8 0.0 1.0
H5' A:DG3 3.0 0.0 1.0
HZ1 B:LYS37 3.2 0.0 1.0
H2'' A:DC2 3.2 0.0 1.0
C2' A:DC2 3.4 0.0 1.0
H2' A:DC2 3.8 0.0 1.0
H8 A:DG3 3.9 0.0 1.0
C4' A:DC2 4.0 0.0 1.0
C4' A:DG3 4.0 0.0 1.0
HD2 B:LYS37 4.0 0.0 1.0
HZ2 B:LYS37 4.1 0.0 1.0
NZ B:LYS37 4.1 0.0 1.0
H4' A:DC2 4.1 0.0 1.0
HD3 B:LYS37 4.2 0.0 1.0
O4' A:DG3 4.2 0.0 1.0
H5' A:DC2 4.3 0.0 1.0
H4' A:DG3 4.4 0.0 1.0
CD B:LYS37 4.5 0.0 1.0
C5' A:DC2 4.6 0.0 1.0
C8 A:DG3 4.7 0.0 1.0
C1' A:DC2 4.7 0.0 1.0
H5'' A:DC2 4.7 0.0 1.0
HZ3 B:LYS37 4.7 0.0 1.0
HH22 B:ARG44 4.8 0.0 1.0
H1' A:DC2 4.9 0.0 1.0
H2' A:DG3 4.9 0.0 1.0
CE B:LYS37 4.9 0.0 1.0
O4' A:DC2 4.9 0.0 1.0
H3' A:DG3 5.0 0.0 1.0

Phosphorus binding site 3 out of 4 in 1a6b

Go back to Phosphorus Binding Sites List in 1a6b
Phosphorus binding site 3 out of 4 in the uc(Nmr) Structure of the Complex Between the Zinc Finger Protein NCP10 of Moloney Murine Leukemia Virus and A Sequence of the Psi-Packaging Domain of Hiv-1, 20 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of uc(Nmr) Structure of the Complex Between the Zinc Finger Protein NCP10 of Moloney Murine Leukemia Virus and A Sequence of the Psi-Packaging Domain of Hiv-1, 20 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4

b:0.0
occ:1.00
P A:DC4 0.0 0.0 1.0
OP1 A:DC4 1.5 0.0 1.0
OP2 A:DC4 1.5 0.0 1.0
O3' A:DG3 1.6 0.0 1.0
O5' A:DC4 1.6 0.0 1.0
C5' A:DC4 2.6 0.0 1.0
C3' A:DG3 2.7 0.0 1.0
H5'' A:DC4 2.8 0.0 1.0
H5' A:DC4 2.9 0.0 1.0
H1' A:DG3 3.0 0.0 1.0
H2'' A:DG3 3.0 0.0 1.0
C2' A:DG3 3.2 0.0 1.0
H2' A:DC5 3.2 0.0 1.0
H4' A:DG3 3.4 0.0 1.0
C4' A:DG3 3.5 0.0 1.0
C1' A:DG3 3.5 0.0 1.0
H6 A:DC5 3.5 0.0 1.0
H3' A:DG3 3.6 0.0 1.0
O4' A:DG3 3.7 0.0 1.0
H3' A:DC4 3.9 0.0 1.0
C4' A:DC4 4.0 0.0 1.0
HH2 B:TRP35 4.1 0.0 1.0
C6 A:DC5 4.1 0.0 1.0
H3' A:DC5 4.2 0.0 1.0
H2' A:DG3 4.3 0.0 1.0
C2' A:DC5 4.3 0.0 1.0
H5 A:DC5 4.5 0.0 1.0
C3' A:DC4 4.5 0.0 1.0
C5 A:DC5 4.6 0.0 1.0
O4' A:DC4 4.7 0.0 1.0
H4' A:DC4 4.8 0.0 1.0
O5' A:DC5 4.8 0.0 1.0
C3' A:DC5 4.8 0.0 1.0
HE B:ARG23 4.8 0.0 1.0
N1 A:DC5 4.9 0.0 1.0
H2'' A:DC5 4.9 0.0 1.0
N9 A:DG3 4.9 0.0 1.0
C5' A:DG3 4.9 0.0 1.0

Phosphorus binding site 4 out of 4 in 1a6b

Go back to Phosphorus Binding Sites List in 1a6b
Phosphorus binding site 4 out of 4 in the uc(Nmr) Structure of the Complex Between the Zinc Finger Protein NCP10 of Moloney Murine Leukemia Virus and A Sequence of the Psi-Packaging Domain of Hiv-1, 20 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of uc(Nmr) Structure of the Complex Between the Zinc Finger Protein NCP10 of Moloney Murine Leukemia Virus and A Sequence of the Psi-Packaging Domain of Hiv-1, 20 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P5

b:0.0
occ:1.00
P A:DC5 0.0 0.0 1.0
OP1 A:DC5 1.5 0.0 1.0
OP2 A:DC5 1.5 0.0 1.0
O5' A:DC5 1.6 0.0 1.0
O3' A:DC4 1.6 0.0 1.0
C5' A:DC5 2.6 0.0 1.0
C3' A:DC4 2.7 0.0 1.0
H5' A:DC5 2.8 0.0 1.0
H3' A:DC4 2.9 0.0 1.0
H5'' A:DC5 3.0 0.0 1.0
H4' A:DC4 3.1 0.0 1.0
HH21 B:ARG23 3.2 0.0 1.0
H5'' A:DC4 3.3 0.0 1.0
C4' A:DC4 3.3 0.0 1.0
C5' A:DC4 3.8 0.0 1.0
C2' A:DC4 4.0 0.0 1.0
C4' A:DC5 4.0 0.0 1.0
H3' A:DC5 4.0 0.0 1.0
H2'' A:DC4 4.0 0.0 1.0
NH2 B:ARG23 4.2 0.0 1.0
HE B:ARG23 4.3 0.0 1.0
H1' A:DC4 4.3 0.0 1.0
O4' A:DC5 4.4 0.0 1.0
O5' A:DC4 4.5 0.0 1.0
C3' A:DC5 4.6 0.0 1.0
O4' A:DC4 4.6 0.0 1.0
C1' A:DC4 4.6 0.0 1.0
HH22 B:ARG23 4.7 0.0 1.0
H2' A:DC4 4.7 0.0 1.0
H5' A:DC4 4.7 0.0 1.0
H4' A:DC5 4.8 0.0 1.0
H6 A:DC5 4.8 0.0 1.0
OP2 A:DC4 4.9 0.0 1.0

Reference:

W.Schuler, C.Dong, K.Wecker, B.P.Roques. uc(Nmr) Structure of the Complex Between the Zinc Finger Protein NCP10 of Moloney Murine Leukemia Virus and the Single-Stranded Pentanucleotide D(Acgcc): Comparison with Hiv-NCP7 Complexes. Biochemistry V. 38 12984 1999.
ISSN: ISSN 0006-2960
PubMed: 10529168
DOI: 10.1021/BI990378D
Page generated: Fri Sep 25 12:18:42 2020

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