Phosphorus in PDB 1a60: uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures
Phosphorus Binding Sites:
Phosphorus binding site 1 out
of 43 in 1a60
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Phosphorus Binding Sites List in 1a60
Phosphorus binding site 1 out
of 43 in the uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 1 of uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P2
b:0.0
occ:1.00
|
P
|
A:G2
|
0.0
|
0.0
|
1.0
|
OP2
|
A:G2
|
1.5
|
0.0
|
1.0
|
OP1
|
A:G2
|
1.5
|
0.0
|
1.0
|
O3'
|
A:G1
|
1.6
|
0.0
|
1.0
|
O5'
|
A:G2
|
1.6
|
0.0
|
1.0
|
C5'
|
A:G2
|
2.6
|
0.0
|
1.0
|
H3'
|
A:G1
|
2.6
|
0.0
|
1.0
|
H5'
|
A:G2
|
2.6
|
0.0
|
1.0
|
C3'
|
A:G1
|
2.6
|
0.0
|
1.0
|
H5''
|
A:G2
|
3.1
|
0.0
|
1.0
|
C2'
|
A:G1
|
3.7
|
0.0
|
1.0
|
C4'
|
A:G1
|
3.7
|
0.0
|
1.0
|
HO2'
|
A:G1
|
3.8
|
0.0
|
1.0
|
H2'
|
A:G1
|
3.8
|
0.0
|
1.0
|
H4'
|
A:G1
|
3.8
|
0.0
|
1.0
|
C4'
|
A:G2
|
3.9
|
0.0
|
1.0
|
O5'
|
A:G1
|
3.9
|
0.0
|
1.0
|
O2'
|
A:G1
|
4.0
|
0.0
|
1.0
|
H5''
|
A:G1
|
4.1
|
0.0
|
1.0
|
O4'
|
A:G2
|
4.1
|
0.0
|
1.0
|
H8
|
A:G2
|
4.1
|
0.0
|
1.0
|
C5'
|
A:G1
|
4.1
|
0.0
|
1.0
|
H3'
|
A:G2
|
4.3
|
0.0
|
1.0
|
HO5'
|
A:G1
|
4.5
|
0.0
|
1.0
|
H4'
|
A:G2
|
4.6
|
0.0
|
1.0
|
C3'
|
A:G2
|
4.7
|
0.0
|
1.0
|
C1'
|
A:G1
|
4.9
|
0.0
|
1.0
|
O4'
|
A:G1
|
4.9
|
0.0
|
1.0
|
|
Phosphorus binding site 2 out
of 43 in 1a60
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Phosphorus Binding Sites List in 1a60
Phosphorus binding site 2 out
of 43 in the uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 2 of uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P3
b:0.0
occ:1.00
|
P
|
A:G3
|
0.0
|
0.0
|
1.0
|
OP2
|
A:G3
|
1.5
|
0.0
|
1.0
|
OP1
|
A:G3
|
1.5
|
0.0
|
1.0
|
O5'
|
A:G3
|
1.6
|
0.0
|
1.0
|
O3'
|
A:G2
|
1.6
|
0.0
|
1.0
|
H5'
|
A:G3
|
2.6
|
0.0
|
1.0
|
C5'
|
A:G3
|
2.6
|
0.0
|
1.0
|
C3'
|
A:G2
|
2.6
|
0.0
|
1.0
|
H3'
|
A:G2
|
2.7
|
0.0
|
1.0
|
H5''
|
A:G3
|
3.2
|
0.0
|
1.0
|
H8
|
A:G3
|
3.3
|
0.0
|
1.0
|
H5''
|
A:G2
|
3.6
|
0.0
|
1.0
|
C2'
|
A:G2
|
3.6
|
0.0
|
1.0
|
H2'
|
A:G2
|
3.7
|
0.0
|
1.0
|
C4'
|
A:G2
|
3.8
|
0.0
|
1.0
|
C4'
|
A:G3
|
3.9
|
0.0
|
1.0
|
O2'
|
A:G2
|
3.9
|
0.0
|
1.0
|
O4'
|
A:G3
|
3.9
|
0.0
|
1.0
|
HO2'
|
A:G2
|
4.0
|
0.0
|
1.0
|
H4'
|
A:G2
|
4.1
|
0.0
|
1.0
|
C5'
|
A:G2
|
4.2
|
0.0
|
1.0
|
H3'
|
A:G3
|
4.2
|
0.0
|
1.0
|
C8
|
A:G3
|
4.4
|
0.0
|
1.0
|
H4'
|
A:G3
|
4.6
|
0.0
|
1.0
|
C3'
|
A:G3
|
4.7
|
0.0
|
1.0
|
O5'
|
A:G2
|
4.8
|
0.0
|
1.0
|
C1'
|
A:G2
|
4.9
|
0.0
|
1.0
|
O4'
|
A:G2
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 3 out
of 43 in 1a60
Go back to
Phosphorus Binding Sites List in 1a60
Phosphorus binding site 3 out
of 43 in the uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 3 of uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P4
b:0.0
occ:1.00
|
P
|
A:A4
|
0.0
|
0.0
|
1.0
|
OP1
|
A:A4
|
1.5
|
0.0
|
1.0
|
OP2
|
A:A4
|
1.5
|
0.0
|
1.0
|
O3'
|
A:G3
|
1.6
|
0.0
|
1.0
|
O5'
|
A:A4
|
1.6
|
0.0
|
1.0
|
C3'
|
A:G3
|
2.6
|
0.0
|
1.0
|
C5'
|
A:A4
|
2.6
|
0.0
|
1.0
|
H5'
|
A:A4
|
2.7
|
0.0
|
1.0
|
H3'
|
A:G3
|
2.8
|
0.0
|
1.0
|
H8
|
A:A4
|
2.9
|
0.0
|
1.0
|
H5''
|
A:A4
|
3.0
|
0.0
|
1.0
|
C2'
|
A:G3
|
3.4
|
0.0
|
1.0
|
H2'
|
A:G3
|
3.5
|
0.0
|
1.0
|
O2'
|
A:G3
|
3.5
|
0.0
|
1.0
|
HO2'
|
A:G3
|
3.7
|
0.0
|
1.0
|
C4'
|
A:G3
|
3.9
|
0.0
|
1.0
|
C4'
|
A:A4
|
4.0
|
0.0
|
1.0
|
H5''
|
A:G3
|
4.0
|
0.0
|
1.0
|
C8
|
A:A4
|
4.0
|
0.0
|
1.0
|
H4'
|
A:G3
|
4.1
|
0.0
|
1.0
|
O4'
|
A:A4
|
4.2
|
0.0
|
1.0
|
H3'
|
A:A4
|
4.3
|
0.0
|
1.0
|
C5'
|
A:G3
|
4.5
|
0.0
|
1.0
|
H4'
|
A:A4
|
4.7
|
0.0
|
1.0
|
N7
|
A:A4
|
4.7
|
0.0
|
1.0
|
C3'
|
A:A4
|
4.7
|
0.0
|
1.0
|
C1'
|
A:G3
|
4.8
|
0.0
|
1.0
|
N9
|
A:A4
|
5.0
|
0.0
|
1.0
|
O4'
|
A:G3
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 4 out
of 43 in 1a60
Go back to
Phosphorus Binding Sites List in 1a60
Phosphorus binding site 4 out
of 43 in the uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 4 of uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P5
b:0.0
occ:1.00
|
P
|
A:G5
|
0.0
|
0.0
|
1.0
|
OP2
|
A:G5
|
1.5
|
0.0
|
1.0
|
OP1
|
A:G5
|
1.5
|
0.0
|
1.0
|
O3'
|
A:A4
|
1.6
|
0.0
|
1.0
|
O5'
|
A:G5
|
1.6
|
0.0
|
1.0
|
C3'
|
A:A4
|
2.6
|
0.0
|
1.0
|
C5'
|
A:G5
|
2.6
|
0.0
|
1.0
|
H5'
|
A:G5
|
2.6
|
0.0
|
1.0
|
H3'
|
A:A4
|
2.6
|
0.0
|
1.0
|
H5''
|
A:G5
|
3.1
|
0.0
|
1.0
|
H8
|
A:G5
|
3.5
|
0.0
|
1.0
|
C2'
|
A:A4
|
3.6
|
0.0
|
1.0
|
H5''
|
A:A4
|
3.6
|
0.0
|
1.0
|
H2'
|
A:A4
|
3.7
|
0.0
|
1.0
|
C4'
|
A:A4
|
3.8
|
0.0
|
1.0
|
C4'
|
A:G5
|
3.9
|
0.0
|
1.0
|
O2'
|
A:A4
|
3.9
|
0.0
|
1.0
|
H4'
|
A:A4
|
4.0
|
0.0
|
1.0
|
O4'
|
A:G5
|
4.0
|
0.0
|
1.0
|
C5'
|
A:A4
|
4.2
|
0.0
|
1.0
|
H3'
|
A:G5
|
4.3
|
0.0
|
1.0
|
C8
|
A:G5
|
4.6
|
0.0
|
1.0
|
H4'
|
A:G5
|
4.6
|
0.0
|
1.0
|
C3'
|
A:G5
|
4.8
|
0.0
|
1.0
|
HO2'
|
A:A4
|
4.8
|
0.0
|
1.0
|
C1'
|
A:A4
|
4.9
|
0.0
|
1.0
|
O4'
|
A:A4
|
5.0
|
0.0
|
1.0
|
O5'
|
A:A4
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 5 out
of 43 in 1a60
Go back to
Phosphorus Binding Sites List in 1a60
Phosphorus binding site 5 out
of 43 in the uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 5 of uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P6
b:0.0
occ:1.00
|
P
|
A:C6
|
0.0
|
0.0
|
1.0
|
OP1
|
A:C6
|
1.5
|
0.0
|
1.0
|
OP2
|
A:C6
|
1.5
|
0.0
|
1.0
|
O3'
|
A:G5
|
1.6
|
0.0
|
1.0
|
O5'
|
A:C6
|
1.6
|
0.0
|
1.0
|
C5'
|
A:C6
|
2.6
|
0.0
|
1.0
|
C3'
|
A:G5
|
2.6
|
0.0
|
1.0
|
H3'
|
A:G5
|
2.7
|
0.0
|
1.0
|
H5''
|
A:C6
|
2.8
|
0.0
|
1.0
|
H5'
|
A:C6
|
3.0
|
0.0
|
1.0
|
H6
|
A:C6
|
3.4
|
0.0
|
1.0
|
H5''
|
A:G5
|
3.4
|
0.0
|
1.0
|
H3'
|
A:C6
|
3.6
|
0.0
|
1.0
|
C2'
|
A:G5
|
3.7
|
0.0
|
1.0
|
C4'
|
A:G5
|
3.7
|
0.0
|
1.0
|
H2'
|
A:G5
|
3.9
|
0.0
|
1.0
|
H4'
|
A:G5
|
3.9
|
0.0
|
1.0
|
C4'
|
A:C6
|
4.0
|
0.0
|
1.0
|
O2'
|
A:G5
|
4.0
|
0.0
|
1.0
|
C5'
|
A:G5
|
4.1
|
0.0
|
1.0
|
OP2
|
A:U7
|
4.2
|
0.0
|
1.0
|
C3'
|
A:C6
|
4.3
|
0.0
|
1.0
|
C6
|
A:C6
|
4.4
|
0.0
|
1.0
|
O4'
|
A:C6
|
4.5
|
0.0
|
1.0
|
H5
|
A:C6
|
4.7
|
0.0
|
1.0
|
H4'
|
A:C6
|
4.8
|
0.0
|
1.0
|
O5'
|
A:G5
|
4.8
|
0.0
|
1.0
|
HO2'
|
A:G5
|
4.9
|
0.0
|
1.0
|
H5'
|
A:G5
|
4.9
|
0.0
|
1.0
|
O4'
|
A:G5
|
4.9
|
0.0
|
1.0
|
C1'
|
A:G5
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 6 out
of 43 in 1a60
Go back to
Phosphorus Binding Sites List in 1a60
Phosphorus binding site 6 out
of 43 in the uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 6 of uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P7
b:0.0
occ:1.00
|
P
|
A:U7
|
0.0
|
0.0
|
1.0
|
OP2
|
A:U7
|
1.5
|
0.0
|
1.0
|
OP1
|
A:U7
|
1.5
|
0.0
|
1.0
|
O5'
|
A:U7
|
1.6
|
0.0
|
1.0
|
O3'
|
A:C6
|
1.6
|
0.0
|
1.0
|
C5'
|
A:U7
|
2.6
|
0.0
|
1.0
|
C3'
|
A:C6
|
2.6
|
0.0
|
1.0
|
H3'
|
A:C6
|
2.7
|
0.0
|
1.0
|
H5'
|
A:U7
|
2.7
|
0.0
|
1.0
|
H5''
|
A:U7
|
3.1
|
0.0
|
1.0
|
H6
|
A:U7
|
3.3
|
0.0
|
1.0
|
HO2'
|
A:C6
|
3.3
|
0.0
|
1.0
|
C2'
|
A:C6
|
3.6
|
0.0
|
1.0
|
H5''
|
A:C6
|
3.7
|
0.0
|
1.0
|
H2'
|
A:C6
|
3.8
|
0.0
|
1.0
|
C4'
|
A:C6
|
3.8
|
0.0
|
1.0
|
O2'
|
A:C6
|
3.9
|
0.0
|
1.0
|
C4'
|
A:U7
|
3.9
|
0.0
|
1.0
|
H4'
|
A:C6
|
4.0
|
0.0
|
1.0
|
O4'
|
A:U7
|
4.1
|
0.0
|
1.0
|
H3'
|
A:U7
|
4.2
|
0.0
|
1.0
|
C5'
|
A:C6
|
4.2
|
0.0
|
1.0
|
C6
|
A:U7
|
4.3
|
0.0
|
1.0
|
O5'
|
A:C6
|
4.5
|
0.0
|
1.0
|
H5
|
A:U7
|
4.6
|
0.0
|
1.0
|
C3'
|
A:U7
|
4.7
|
0.0
|
1.0
|
H4'
|
A:U7
|
4.7
|
0.0
|
1.0
|
C5
|
A:U7
|
4.9
|
0.0
|
1.0
|
C1'
|
A:C6
|
4.9
|
0.0
|
1.0
|
O4'
|
A:C6
|
5.0
|
0.0
|
1.0
|
H6
|
A:C6
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 7 out
of 43 in 1a60
Go back to
Phosphorus Binding Sites List in 1a60
Phosphorus binding site 7 out
of 43 in the uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 7 of uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P8
b:0.0
occ:1.00
|
P
|
A:C8
|
0.0
|
0.0
|
1.0
|
OP1
|
A:C8
|
1.5
|
0.0
|
1.0
|
OP2
|
A:C8
|
1.5
|
0.0
|
1.0
|
O3'
|
A:U7
|
1.6
|
0.0
|
1.0
|
O5'
|
A:C8
|
1.6
|
0.0
|
1.0
|
C5'
|
A:C8
|
2.6
|
0.0
|
1.0
|
C3'
|
A:U7
|
2.6
|
0.0
|
1.0
|
H3'
|
A:U7
|
2.7
|
0.0
|
1.0
|
H5''
|
A:C8
|
2.7
|
0.0
|
1.0
|
H6
|
A:C8
|
3.1
|
0.0
|
1.0
|
H5'
|
A:C8
|
3.1
|
0.0
|
1.0
|
H3'
|
A:C8
|
3.5
|
0.0
|
1.0
|
C2'
|
A:U7
|
3.5
|
0.0
|
1.0
|
H2'
|
A:U7
|
3.7
|
0.0
|
1.0
|
O2'
|
A:U7
|
3.7
|
0.0
|
1.0
|
H5''
|
A:U7
|
3.7
|
0.0
|
1.0
|
C4'
|
A:U7
|
3.9
|
0.0
|
1.0
|
C4'
|
A:C8
|
3.9
|
0.0
|
1.0
|
HO2'
|
A:U7
|
4.0
|
0.0
|
1.0
|
H4'
|
A:U7
|
4.0
|
0.0
|
1.0
|
C6
|
A:C8
|
4.1
|
0.0
|
1.0
|
C3'
|
A:C8
|
4.2
|
0.0
|
1.0
|
C5'
|
A:U7
|
4.3
|
0.0
|
1.0
|
H2'
|
A:C8
|
4.3
|
0.0
|
1.0
|
O4'
|
A:C8
|
4.5
|
0.0
|
1.0
|
H5
|
A:C8
|
4.5
|
0.0
|
1.0
|
H4'
|
A:C8
|
4.7
|
0.0
|
1.0
|
C2'
|
A:C8
|
4.8
|
0.0
|
1.0
|
C5
|
A:C8
|
4.8
|
0.0
|
1.0
|
C1'
|
A:U7
|
4.9
|
0.0
|
1.0
|
O5'
|
A:U7
|
4.9
|
0.0
|
1.0
|
O4'
|
A:U7
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 8 out
of 43 in 1a60
Go back to
Phosphorus Binding Sites List in 1a60
Phosphorus binding site 8 out
of 43 in the uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 8 of uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P9
b:0.0
occ:1.00
|
P
|
A:A9
|
0.0
|
0.0
|
1.0
|
OP2
|
A:A9
|
1.5
|
0.0
|
1.0
|
OP1
|
A:A9
|
1.5
|
0.0
|
1.0
|
O3'
|
A:C8
|
1.6
|
0.0
|
1.0
|
O5'
|
A:A9
|
1.6
|
0.0
|
1.0
|
C5'
|
A:A9
|
2.6
|
0.0
|
1.0
|
C3'
|
A:C8
|
2.6
|
0.0
|
1.0
|
H3'
|
A:C8
|
2.8
|
0.0
|
1.0
|
H5''
|
A:A9
|
2.8
|
0.0
|
1.0
|
HO2'
|
A:C8
|
2.9
|
0.0
|
1.0
|
O2'
|
A:C8
|
2.9
|
0.0
|
1.0
|
H5'
|
A:A9
|
2.9
|
0.0
|
1.0
|
C2'
|
A:C8
|
3.3
|
0.0
|
1.0
|
H2'
|
A:U7
|
3.6
|
0.0
|
1.0
|
H3'
|
A:A9
|
3.7
|
0.0
|
1.0
|
H2'
|
A:C8
|
3.8
|
0.0
|
1.0
|
C4'
|
A:C8
|
3.9
|
0.0
|
1.0
|
O2
|
A:U7
|
4.0
|
0.0
|
1.0
|
C4'
|
A:A9
|
4.0
|
0.0
|
1.0
|
H4'
|
A:C8
|
4.0
|
0.0
|
1.0
|
H8
|
A:A9
|
4.2
|
0.0
|
1.0
|
C2
|
A:U7
|
4.2
|
0.0
|
1.0
|
O2'
|
A:U7
|
4.3
|
0.0
|
1.0
|
OP2
|
A:A10
|
4.3
|
0.0
|
1.0
|
C2'
|
A:U7
|
4.4
|
0.0
|
1.0
|
C3'
|
A:A9
|
4.4
|
0.0
|
1.0
|
O4'
|
A:A9
|
4.5
|
0.0
|
1.0
|
C1'
|
A:C8
|
4.5
|
0.0
|
1.0
|
H5''
|
A:C8
|
4.6
|
0.0
|
1.0
|
N3
|
A:U7
|
4.7
|
0.0
|
1.0
|
H3
|
A:U7
|
4.7
|
0.0
|
1.0
|
H1'
|
A:C8
|
4.7
|
0.0
|
1.0
|
H4'
|
A:A9
|
4.8
|
0.0
|
1.0
|
N1
|
A:U7
|
4.8
|
0.0
|
1.0
|
C5'
|
A:C8
|
4.8
|
0.0
|
1.0
|
O4'
|
A:C8
|
4.9
|
0.0
|
1.0
|
C8
|
A:A9
|
4.9
|
0.0
|
1.0
|
C1'
|
A:U7
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 9 out
of 43 in 1a60
Go back to
Phosphorus Binding Sites List in 1a60
Phosphorus binding site 9 out
of 43 in the uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 9 of uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P10
b:0.0
occ:1.00
|
P
|
A:A10
|
0.0
|
0.0
|
1.0
|
OP1
|
A:A10
|
1.5
|
0.0
|
1.0
|
OP2
|
A:A10
|
1.5
|
0.0
|
1.0
|
O5'
|
A:A10
|
1.6
|
0.0
|
1.0
|
O3'
|
A:A9
|
1.6
|
0.0
|
1.0
|
C5'
|
A:A10
|
2.6
|
0.0
|
1.0
|
C3'
|
A:A9
|
2.6
|
0.0
|
1.0
|
H5'
|
A:A10
|
2.7
|
0.0
|
1.0
|
H3'
|
A:A9
|
2.7
|
0.0
|
1.0
|
H5''
|
A:A10
|
3.1
|
0.0
|
1.0
|
H8
|
A:A10
|
3.2
|
0.0
|
1.0
|
C2'
|
A:A9
|
3.6
|
0.0
|
1.0
|
H5''
|
A:A9
|
3.7
|
0.0
|
1.0
|
H2'
|
A:A9
|
3.8
|
0.0
|
1.0
|
C4'
|
A:A9
|
3.8
|
0.0
|
1.0
|
C4'
|
A:A10
|
3.9
|
0.0
|
1.0
|
O2'
|
A:A9
|
3.9
|
0.0
|
1.0
|
H4'
|
A:A9
|
4.0
|
0.0
|
1.0
|
O4'
|
A:A10
|
4.0
|
0.0
|
1.0
|
C5'
|
A:A9
|
4.2
|
0.0
|
1.0
|
C8
|
A:A10
|
4.3
|
0.0
|
1.0
|
H3'
|
A:A10
|
4.4
|
0.0
|
1.0
|
O5'
|
A:A9
|
4.5
|
0.0
|
1.0
|
H4'
|
A:A10
|
4.6
|
0.0
|
1.0
|
HO2'
|
A:A9
|
4.7
|
0.0
|
1.0
|
C3'
|
A:A10
|
4.8
|
0.0
|
1.0
|
C1'
|
A:A9
|
4.9
|
0.0
|
1.0
|
O4'
|
A:A9
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 10 out
of 43 in 1a60
Go back to
Phosphorus Binding Sites List in 1a60
Phosphorus binding site 10 out
of 43 in the uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 10 of uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single-and Double-Stranded Rna, 24 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P11
b:0.0
occ:1.00
|
P
|
A:C11
|
0.0
|
0.0
|
1.0
|
OP1
|
A:C11
|
1.5
|
0.0
|
1.0
|
OP2
|
A:C11
|
1.5
|
0.0
|
1.0
|
O5'
|
A:C11
|
1.6
|
0.0
|
1.0
|
O3'
|
A:A10
|
1.6
|
0.0
|
1.0
|
C5'
|
A:C11
|
2.6
|
0.0
|
1.0
|
C3'
|
A:A10
|
2.6
|
0.0
|
1.0
|
H3'
|
A:A10
|
2.7
|
0.0
|
1.0
|
H5'
|
A:C11
|
2.7
|
0.0
|
1.0
|
H5''
|
A:C11
|
3.0
|
0.0
|
1.0
|
H6
|
A:C11
|
3.1
|
0.0
|
1.0
|
HO2'
|
A:A10
|
3.1
|
0.0
|
1.0
|
C2'
|
A:A10
|
3.5
|
0.0
|
1.0
|
H2'
|
A:A10
|
3.6
|
0.0
|
1.0
|
O2'
|
A:A10
|
3.7
|
0.0
|
1.0
|
H5''
|
A:A10
|
3.8
|
0.0
|
1.0
|
C4'
|
A:A10
|
3.9
|
0.0
|
1.0
|
C4'
|
A:C11
|
3.9
|
0.0
|
1.0
|
H4'
|
A:A10
|
4.1
|
0.0
|
1.0
|
C6
|
A:C11
|
4.1
|
0.0
|
1.0
|
H3'
|
A:C11
|
4.1
|
0.0
|
1.0
|
O4'
|
A:C11
|
4.2
|
0.0
|
1.0
|
H5
|
A:C11
|
4.3
|
0.0
|
1.0
|
C5'
|
A:A10
|
4.4
|
0.0
|
1.0
|
C5
|
A:C11
|
4.6
|
0.0
|
1.0
|
C3'
|
A:C11
|
4.6
|
0.0
|
1.0
|
H4'
|
A:C11
|
4.7
|
0.0
|
1.0
|
C1'
|
A:A10
|
4.9
|
0.0
|
1.0
|
|
Reference:
M.H.Kolk,
M.Van Der Graaf,
S.S.Wijmenga,
C.W.Pleij,
H.A.Heus,
C.W.Hilbers.
uc(Nmr) Structure of A Classical Pseudoknot: Interplay of Single- and Double-Stranded Rna. Science V. 280 434 1998.
ISSN: ISSN 0036-8075
PubMed: 9545221
DOI: 10.1126/SCIENCE.280.5362.434
Page generated: Fri Sep 25 12:17:10 2020
|