Phosphorus in PDB 1a59: Cold-Active Citrate Synthase

Protein crystallography data

The structure of Cold-Active Citrate Synthase, PDB code: 1a59 was solved by R.J.M.Russell, U.Gerike, M.J.Danson, D.W.Hough, G.L.Taylor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 100.00 / 2.09
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 70.800, 70.800, 307.800, 90.00, 90.00, 120.00
R / Rfree (%) 18.4 / 23.6

Phosphorus Binding Sites:

The binding sites of Phosphorus atom in the Cold-Active Citrate Synthase (pdb code 1a59). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 3 binding sites of Phosphorus where determined in the Cold-Active Citrate Synthase, PDB code: 1a59:
Jump to Phosphorus binding site number: 1; 2; 3;

Phosphorus binding site 1 out of 3 in 1a59

Go back to Phosphorus Binding Sites List in 1a59
Phosphorus binding site 1 out of 3 in the Cold-Active Citrate Synthase


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Cold-Active Citrate Synthase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P380

b:51.1
occ:1.00
P3B A:COA380 0.0 51.1 1.0
O8A A:COA380 1.6 48.5 1.0
O9A A:COA380 1.6 49.6 1.0
O7A A:COA380 1.6 49.0 1.0
O3B A:COA380 1.7 44.8 1.0
C3B A:COA380 2.7 37.7 1.0
C4B A:COA380 3.4 36.4 1.0
C2B A:COA380 4.0 34.9 1.0
O2B A:COA380 4.3 37.2 1.0
O4B A:COA380 4.3 29.1 1.0
C5B A:COA380 4.5 39.2 1.0
C1B A:COA380 4.6 28.4 1.0

Phosphorus binding site 2 out of 3 in 1a59

Go back to Phosphorus Binding Sites List in 1a59
Phosphorus binding site 2 out of 3 in the Cold-Active Citrate Synthase


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Cold-Active Citrate Synthase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P380

b:45.8
occ:1.00
P1A A:COA380 0.0 45.8 1.0
O2A A:COA380 1.5 47.2 1.0
O1A A:COA380 1.6 48.2 1.0
O3A A:COA380 1.6 45.2 1.0
O5B A:COA380 1.7 45.4 1.0
C5B A:COA380 2.7 39.2 1.0
P2A A:COA380 2.9 36.8 1.0
O5A A:COA380 3.4 39.9 1.0
O4A A:COA380 3.5 44.4 1.0
NZ A:LYS263 3.7 24.9 1.0
C3B A:COA380 3.7 37.7 1.0
C4B A:COA380 3.8 36.4 1.0
C2B A:COA380 3.9 34.9 1.0
O6A A:COA380 4.1 38.3 1.0
CE A:LYS263 4.2 21.9 1.0
C8A A:COA380 4.4 18.4 1.0
O4B A:COA380 4.5 29.1 1.0
CCP A:COA380 4.7 22.4 1.0
C1B A:COA380 4.7 28.4 1.0
N9A A:COA380 4.8 22.0 1.0
CAP A:COA380 4.9 13.8 1.0
CDP A:COA380 4.9 17.9 1.0
O2B A:COA380 5.0 37.2 1.0

Phosphorus binding site 3 out of 3 in 1a59

Go back to Phosphorus Binding Sites List in 1a59
Phosphorus binding site 3 out of 3 in the Cold-Active Citrate Synthase


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Cold-Active Citrate Synthase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P380

b:36.8
occ:1.00
P2A A:COA380 0.0 36.8 1.0
O4A A:COA380 1.5 44.4 1.0
O5A A:COA380 1.6 39.9 1.0
O3A A:COA380 1.6 45.2 1.0
O6A A:COA380 1.7 38.3 1.0
CCP A:COA380 2.7 22.4 1.0
P1A A:COA380 2.9 45.8 1.0
O1A A:COA380 3.3 48.2 1.0
O5B A:COA380 3.4 45.4 1.0
CBP A:COA380 3.8 17.4 1.0
CDP A:COA380 3.8 17.9 1.0
NE A:ARG270 4.0 10.8 1.0
O2A A:COA380 4.2 47.2 1.0
NH2 A:ARG270 4.2 10.3 1.0
C5B A:COA380 4.2 39.2 1.0
CAP A:COA380 4.4 13.8 1.0
CZ A:ARG270 4.6 11.3 1.0
OAP A:COA380 4.8 13.8 1.0
CA A:ARG270 4.8 8.0 1.0
NZ A:LYS273 4.9 14.7 1.0
CD A:ARG270 5.0 8.3 1.0

Reference:

R.J.Russell, U.Gerike, M.J.Danson, D.W.Hough, G.L.Taylor. Structural Adaptations of the Cold-Active Citrate Synthase From An Antarctic Bacterium. Structure V. 6 351 1998.
ISSN: ISSN 0969-2126
PubMed: 9551556
DOI: 10.1016/S0969-2126(98)00037-9
Page generated: Fri Sep 25 12:15:04 2020

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