Phosphorus in PDB 1a51: Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures

Phosphorus Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40;

Binding sites:

The binding sites of Phosphorus atom in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures (pdb code 1a51). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 40 binding sites of Phosphorus where determined in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures, PDB code: 1a51:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Phosphorus binding site 1 out of 40 in 1a51

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Phosphorus binding site 1 out of 40 in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P69

b:3.0
occ:1.00
P A:G69 0.0 3.0 1.0
OP1 A:G69 1.5 3.0 1.0
OP2 A:G69 1.5 3.0 1.0
O5' A:G69 1.6 2.7 1.0
O3' A:G68 1.6 3.3 1.0
C3' A:G68 2.6 3.4 1.0
C5' A:G69 2.6 2.7 1.0
H3' A:G68 2.7 3.2 1.0
H5'' A:G69 2.7 2.8 1.0
H5' A:G69 3.1 2.8 1.0
HO2' A:G68 3.2 3.5 1.0
H2' A:G68 3.4 3.1 1.0
C2' A:G68 3.4 3.4 1.0
H3' A:G69 3.6 2.3 1.0
OP2 A:C70 3.6 2.2 1.0
O2' A:G68 3.7 3.6 1.0
H8 A:G69 3.8 2.5 1.0
C4' A:G69 3.9 2.6 1.0
C4' A:G68 3.9 3.8 1.0
H5'' A:G68 4.0 4.0 1.0
H4' A:G68 4.1 3.9 1.0
C3' A:G69 4.2 2.4 1.0
C5' A:G68 4.5 3.9 1.0
O3' A:G69 4.5 2.4 1.0
H4' A:G69 4.6 2.8 1.0
O4' A:G69 4.6 2.6 1.0
HO5' A:G68 4.7 3.6 1.0
P A:C70 4.7 2.3 1.0
C1' A:G68 4.8 3.6 1.0
C8 A:G69 4.9 2.4 1.0
O4' A:G68 5.0 3.8 1.0

Phosphorus binding site 2 out of 40 in 1a51

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Phosphorus binding site 2 out of 40 in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P70

b:2.3
occ:1.00
P A:C70 0.0 2.3 1.0
OP1 A:C70 1.5 2.4 1.0
OP2 A:C70 1.5 2.2 1.0
O5' A:C70 1.6 2.1 1.0
O3' A:G69 1.6 2.4 1.0
H3' A:G69 2.6 2.3 1.0
C3' A:G69 2.6 2.4 1.0
C5' A:C70 2.6 2.2 1.0
H5' A:C70 2.7 2.3 1.0
H6 A:C70 3.0 2.0 1.0
H5'' A:C70 3.1 2.1 1.0
HO2' A:G69 3.5 2.6 1.0
C2' A:G69 3.6 2.3 1.0
H2' A:G69 3.6 2.1 1.0
C4' A:G69 3.8 2.6 1.0
C4' A:C70 3.9 2.0 1.0
O4' A:C70 4.0 2.1 1.0
H4' A:G69 4.1 2.8 1.0
C6 A:C70 4.1 1.9 1.0
O5' A:G69 4.1 2.7 1.0
O2' A:G69 4.1 2.5 1.0
H5'' A:G69 4.2 2.8 1.0
C5' A:G69 4.3 2.7 1.0
H5 A:C70 4.3 1.9 1.0
H3' A:C70 4.4 1.7 1.0
OP1 A:G69 4.6 3.0 1.0
H4' A:C70 4.6 2.1 1.0
C5 A:C70 4.6 1.8 1.0
P A:G69 4.7 3.0 1.0
C3' A:C70 4.7 1.8 1.0
OP2 A:G69 4.8 3.0 1.0
C1' A:G69 4.9 2.4 1.0
O4' A:G69 4.9 2.6 1.0

Phosphorus binding site 3 out of 40 in 1a51

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Phosphorus binding site 3 out of 40 in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P71

b:1.5
occ:1.00
P A:C71 0.0 1.5 1.0
OP1 A:C71 1.5 1.5 1.0
OP2 A:C71 1.5 1.5 1.0
O5' A:C71 1.6 1.3 1.0
O3' A:C70 1.6 1.8 1.0
C3' A:C70 2.6 1.8 1.0
C5' A:C71 2.6 1.3 1.0
H3' A:C70 2.6 1.7 1.0
H5'' A:C71 2.8 1.3 1.0
H5' A:C71 3.0 1.5 1.0
H6 A:C71 3.2 1.2 1.0
H2' A:C70 3.4 1.6 1.0
HO2' A:C70 3.4 1.9 1.0
C2' A:C70 3.4 1.7 1.0
H3' A:C71 3.7 1.0 1.0
O2' A:C70 3.9 1.8 1.0
C4' A:C70 3.9 2.0 1.0
C4' A:C71 3.9 1.2 1.0
H5'' A:C70 4.0 2.1 1.0
H4' A:C70 4.1 2.1 1.0
OP2 A:G72 4.2 1.0 1.0
C6 A:C71 4.2 1.1 1.0
C3' A:C71 4.3 1.0 1.0
H5 A:C71 4.4 1.2 1.0
O4' A:C71 4.4 1.2 1.0
C5' A:C70 4.5 2.2 1.0
N7 A:G72 4.7 0.8 1.0
H4' A:C71 4.7 1.2 1.0
C1' A:C70 4.8 1.9 1.0
C5 A:C71 4.8 1.1 1.0
O4' A:C70 5.0 2.1 1.0

Phosphorus binding site 4 out of 40 in 1a51

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Phosphorus binding site 4 out of 40 in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P72

b:0.9
occ:1.00
P A:G72 0.0 0.9 1.0
OP1 A:G72 1.5 0.9 1.0
OP2 A:G72 1.5 1.0 1.0
O5' A:G72 1.6 0.8 1.0
O3' A:C71 1.6 0.9 1.0
H3' A:C71 2.6 1.0 1.0
C3' A:C71 2.6 1.0 1.0
C5' A:G72 2.6 0.8 1.0
H5' A:G72 2.8 0.9 1.0
H8 A:G72 2.9 0.7 1.0
H5'' A:G72 3.1 0.9 1.0
HO2' A:C71 3.4 1.0 1.0
C2' A:C71 3.6 0.9 1.0
H2' A:C71 3.7 0.8 1.0
C4' A:C71 3.8 1.2 1.0
H5'' A:C71 3.9 1.3 1.0
C4' A:G72 3.9 0.7 1.0
H4' A:C71 4.0 1.2 1.0
C8 A:G72 4.0 0.7 1.0
O2' A:C71 4.0 0.9 1.0
O4' A:G72 4.1 0.6 1.0
H3' A:G72 4.1 0.7 1.0
C5' A:C71 4.2 1.3 1.0
O5' A:C71 4.4 1.3 1.0
C3' A:G72 4.6 0.6 1.0
H4' A:G72 4.7 0.7 1.0
N7 A:G72 4.8 0.8 1.0
C1' A:C71 4.9 1.0 1.0
O4' A:C71 5.0 1.2 1.0
OP1 A:C71 5.0 1.5 1.0
N9 A:G72 5.0 0.6 1.0
OP1 A:A101 5.0 1.7 1.0

Phosphorus binding site 5 out of 40 in 1a51

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Phosphorus binding site 5 out of 40 in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P73

b:0.7
occ:1.00
P A:A73 0.0 0.7 1.0
OP1 A:A73 1.5 0.9 1.0
OP2 A:A73 1.5 1.1 1.0
O5' A:A73 1.6 0.8 1.0
O3' A:G72 1.6 0.7 1.0
C3' A:G72 2.6 0.6 1.0
C5' A:A73 2.6 1.0 1.0
H5' A:A73 2.7 1.1 1.0
H3' A:G72 2.8 0.7 1.0
HO2' A:G72 2.9 0.6 1.0
H2' A:G72 3.1 0.5 1.0
C2' A:G72 3.2 0.5 1.0
H5'' A:A73 3.4 1.1 1.0
O2' A:G72 3.5 0.5 1.0
C4' A:A73 3.6 0.9 1.0
H4' A:A73 3.7 1.0 1.0
O4' A:A73 3.8 0.7 1.0
OP2 A:A101 3.9 1.7 1.0
C4' A:G72 4.0 0.7 1.0
H4' A:G72 4.1 0.7 1.0
H8 A:A73 4.2 0.7 1.0
H62 A:A101 4.4 1.2 1.0
H5'' A:G72 4.4 0.9 1.0
H5'' A:G100 4.6 2.3 1.0
C1' A:G72 4.6 0.5 1.0
N7 A:A101 4.7 1.2 1.0
C5' A:G72 4.7 0.8 1.0
O6 A:G102 4.8 1.0 1.0
N7 A:G102 4.9 1.0 1.0
O4' A:G72 4.9 0.6 1.0

Phosphorus binding site 6 out of 40 in 1a51

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Phosphorus binding site 6 out of 40 in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P74

b:1.2
occ:1.00
P A:U74 0.0 1.2 1.0
OP1 A:U74 1.5 1.4 1.0
OP2 A:U74 1.5 1.2 1.0
O5' A:U74 1.6 1.2 1.0
O3' A:A73 1.6 1.1 1.0
H3' A:A73 2.5 1.0 1.0
C3' A:A73 2.6 1.0 1.0
C5' A:U74 2.6 1.2 1.0
H5'' A:U74 2.9 1.4 1.0
H5' A:U74 2.9 1.2 1.0
C4' A:A73 3.7 0.9 1.0
HO2' A:A73 3.7 1.0 1.0
H5'' A:A73 3.7 1.1 1.0
C2' A:A73 3.8 0.9 1.0
H3' A:U74 3.8 1.2 1.0
H4' A:A73 3.8 1.0 1.0
H5' A:A73 3.9 1.1 1.0
H2' A:A73 3.9 0.9 1.0
C4' A:U74 3.9 1.2 1.0
H6 A:U74 4.0 1.1 1.0
C5' A:A73 4.0 1.0 1.0
OP2 A:G75 4.2 1.5 1.0
O2' A:A73 4.3 1.0 1.0
C3' A:U74 4.3 1.2 1.0
O4' A:U74 4.5 1.1 1.0
H4' A:U74 4.7 1.2 1.0
O3' A:U74 4.8 1.3 1.0
O4' A:A73 4.9 0.7 1.0
C1' A:A73 4.9 0.8 1.0
C6 A:U74 5.0 1.0 1.0

Phosphorus binding site 7 out of 40 in 1a51

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Phosphorus binding site 7 out of 40 in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 7 of Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P75

b:1.4
occ:1.00
P A:G75 0.0 1.4 1.0
OP1 A:G75 1.5 1.5 1.0
OP2 A:G75 1.5 1.5 1.0
O5' A:G75 1.6 1.4 1.0
O3' A:U74 1.6 1.3 1.0
H3' A:U74 2.6 1.2 1.0
C3' A:U74 2.6 1.2 1.0
C5' A:G75 2.6 1.4 1.0
H5' A:G75 2.8 1.5 1.0
H5'' A:G75 3.1 1.5 1.0
HO2' A:U74 3.4 1.5 1.0
H8 A:G75 3.5 1.3 1.0
C2' A:U74 3.5 1.2 1.0
H2' A:U74 3.6 1.2 1.0
C4' A:U74 3.9 1.2 1.0
C4' A:G75 3.9 1.4 1.0
O2' A:U74 4.0 1.2 1.0
O4' A:G75 4.1 1.4 1.0
H4' A:U74 4.1 1.2 1.0
H5'' A:U74 4.2 1.4 1.0
O5' A:U74 4.2 1.2 1.0
H3' A:G75 4.3 1.4 1.0
C5' A:U74 4.3 1.2 1.0
C8 A:G75 4.5 1.3 1.0
H4' A:G75 4.7 1.5 1.0
C3' A:G75 4.7 1.4 1.0
C1' A:U74 4.8 1.1 1.0
OP2 A:G76 4.9 1.5 1.0
O4' A:U74 4.9 1.1 1.0

Phosphorus binding site 8 out of 40 in 1a51

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Phosphorus binding site 8 out of 40 in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 8 of Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P76

b:1.5
occ:1.00
P A:G76 0.0 1.5 1.0
OP1 A:G76 1.5 1.6 1.0
OP2 A:G76 1.5 1.5 1.0
O5' A:G76 1.6 1.5 1.0
O3' A:G75 1.6 1.5 1.0
H3' A:G75 2.6 1.4 1.0
C3' A:G75 2.6 1.4 1.0
C5' A:G76 2.6 1.5 1.0
H5' A:G76 2.7 1.6 1.0
H5'' A:G76 3.2 1.6 1.0
H5'' A:G75 3.5 1.5 1.0
HO2' A:G75 3.6 1.5 1.0
H8 A:G76 3.6 1.4 1.0
C2' A:G75 3.7 1.4 1.0
C4' A:G75 3.8 1.4 1.0
H2' A:G75 3.8 1.4 1.0
O4' A:G76 3.8 1.4 1.0
C4' A:G76 3.8 1.5 1.0
H4' A:G75 4.0 1.5 1.0
C5' A:G75 4.1 1.4 1.0
O2' A:G75 4.1 1.5 1.0
H4' A:G76 4.4 1.5 1.0
C8 A:G76 4.6 1.4 1.0
O5' A:G75 4.6 1.4 1.0
H3' A:G76 4.8 1.5 1.0
O4' A:G75 4.9 1.4 1.0
C1' A:G75 4.9 1.4 1.0
C3' A:G76 5.0 1.5 1.0

Phosphorus binding site 9 out of 40 in 1a51

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Phosphorus binding site 9 out of 40 in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 9 of Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P77

b:1.5
occ:1.00
P A:U77 0.0 1.5 1.0
OP1 A:U77 1.5 1.6 1.0
OP2 A:U77 1.5 1.5 1.0
O5' A:U77 1.6 1.5 1.0
O3' A:G76 1.6 1.6 1.0
C3' A:G76 2.6 1.5 1.0
C5' A:U77 2.6 1.5 1.0
H3' A:G76 2.7 1.5 1.0
H5'' A:U77 2.8 1.6 1.0
H5' A:U77 3.0 1.5 1.0
H6 A:U77 3.2 1.4 1.0
HO2' A:G76 3.3 1.5 1.0
H2' A:G76 3.4 1.5 1.0
C2' A:G76 3.4 1.4 1.0
O2' A:G76 3.8 1.4 1.0
H3' A:U77 3.9 1.6 1.0
C4' A:U77 3.9 1.5 1.0
C4' A:G76 3.9 1.5 1.0
H5'' A:G76 3.9 1.6 1.0
H4' A:G76 4.1 1.5 1.0
C6 A:U77 4.2 1.4 1.0
O4' A:U77 4.3 1.4 1.0
H5 A:U77 4.3 1.4 1.0
C3' A:U77 4.4 1.5 1.0
H21 A:G98 4.4 1.5 1.0
C5' A:G76 4.5 1.5 1.0
C5 A:U77 4.7 1.4 1.0
H4' A:U77 4.7 1.5 1.0
C1' A:G76 4.8 1.4 1.0
H1 A:G98 4.8 1.4 1.0
OP2 A:A78 4.9 1.7 1.0
O4' A:G76 5.0 1.4 1.0

Phosphorus binding site 10 out of 40 in 1a51

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Phosphorus binding site 10 out of 40 in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 10 of Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P78

b:1.7
occ:1.00
P A:A78 0.0 1.7 1.0
OP1 A:A78 1.5 1.7 1.0
OP2 A:A78 1.5 1.7 1.0
O5' A:A78 1.6 1.7 1.0
O3' A:U77 1.6 1.6 1.0
H3' A:U77 2.6 1.6 1.0
C3' A:U77 2.6 1.5 1.0
C5' A:A78 2.6 1.7 1.0
H5' A:A78 2.7 1.7 1.0
H5'' A:A78 3.1 1.8 1.0
HO2' A:U77 3.3 1.6 1.0
H2' A:U77 3.5 1.5 1.0
C2' A:U77 3.5 1.5 1.0
O2' A:U77 3.9 1.5 1.0
C4' A:U77 3.9 1.5 1.0
C4' A:A78 3.9 1.7 1.0
H8 A:A78 3.9 1.6 1.0
H5'' A:U77 4.0 1.6 1.0
O4' A:A78 4.0 1.6 1.0
H4' A:U77 4.1 1.5 1.0
C5' A:U77 4.5 1.5 1.0
H4' A:A78 4.6 1.7 1.0
H3' A:A78 4.6 1.7 1.0
C1' A:U77 4.8 1.4 1.0
C3' A:A78 4.9 1.7 1.0
C8 A:A78 4.9 1.6 1.0
O5' A:U77 4.9 1.5 1.0
O4' A:U77 5.0 1.4 1.0

Reference:

A.Dallas, P.B.Moore. The Loop E-Loop D Region of Escherichia Coli 5S Rrna: the Solution Structure Reveals An Unusual Loop That May Be Important For Binding Ribosomal Proteins. Structure V. 5 1639 1997.
ISSN: ISSN 0969-2126
PubMed: 9438864
DOI: 10.1016/S0969-2126(97)00311-0
Page generated: Fri Sep 25 12:14:16 2020

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