Phosphorus in PDB 1a51: Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures

Phosphorus Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40;

Binding sites:

The binding sites of Phosphorus atom in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures (pdb code 1a51). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 40 binding sites of Phosphorus where determined in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures, PDB code: 1a51:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Phosphorus binding site 1 out of 40 in 1a51

Go back to Phosphorus Binding Sites List in 1a51
Phosphorus binding site 1 out of 40 in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P69

b:3.0
occ:1.00
P A:G69 0.0 3.0 1.0
OP1 A:G69 1.5 3.0 1.0
OP2 A:G69 1.5 3.0 1.0
O5' A:G69 1.6 2.7 1.0
O3' A:G68 1.6 3.3 1.0
C3' A:G68 2.6 3.4 1.0
C5' A:G69 2.6 2.7 1.0
H3' A:G68 2.7 3.2 1.0
H5'' A:G69 2.7 2.8 1.0
H5' A:G69 3.1 2.8 1.0
HO2' A:G68 3.2 3.5 1.0
H2' A:G68 3.4 3.1 1.0
C2' A:G68 3.4 3.4 1.0
H3' A:G69 3.6 2.3 1.0
OP2 A:C70 3.6 2.2 1.0
O2' A:G68 3.7 3.6 1.0
H8 A:G69 3.8 2.5 1.0
C4' A:G69 3.9 2.6 1.0
C4' A:G68 3.9 3.8 1.0
H5'' A:G68 4.0 4.0 1.0
H4' A:G68 4.1 3.9 1.0
C3' A:G69 4.2 2.4 1.0
C5' A:G68 4.5 3.9 1.0
O3' A:G69 4.5 2.4 1.0
H4' A:G69 4.6 2.8 1.0
O4' A:G69 4.6 2.6 1.0
HO5' A:G68 4.7 3.6 1.0
P A:C70 4.7 2.3 1.0
C1' A:G68 4.8 3.6 1.0
C8 A:G69 4.9 2.4 1.0
O4' A:G68 5.0 3.8 1.0

Phosphorus binding site 2 out of 40 in 1a51

Go back to Phosphorus Binding Sites List in 1a51
Phosphorus binding site 2 out of 40 in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P70

b:2.3
occ:1.00
P A:C70 0.0 2.3 1.0
OP1 A:C70 1.5 2.4 1.0
OP2 A:C70 1.5 2.2 1.0
O5' A:C70 1.6 2.1 1.0
O3' A:G69 1.6 2.4 1.0
H3' A:G69 2.6 2.3 1.0
C3' A:G69 2.6 2.4 1.0
C5' A:C70 2.6 2.2 1.0
H5' A:C70 2.7 2.3 1.0
H6 A:C70 3.0 2.0 1.0
H5'' A:C70 3.1 2.1 1.0
HO2' A:G69 3.5 2.6 1.0
C2' A:G69 3.6 2.3 1.0
H2' A:G69 3.6 2.1 1.0
C4' A:G69 3.8 2.6 1.0
C4' A:C70 3.9 2.0 1.0
O4' A:C70 4.0 2.1 1.0
H4' A:G69 4.1 2.8 1.0
C6 A:C70 4.1 1.9 1.0
O5' A:G69 4.1 2.7 1.0
O2' A:G69 4.1 2.5 1.0
H5'' A:G69 4.2 2.8 1.0
C5' A:G69 4.3 2.7 1.0
H5 A:C70 4.3 1.9 1.0
H3' A:C70 4.4 1.7 1.0
OP1 A:G69 4.6 3.0 1.0
H4' A:C70 4.6 2.1 1.0
C5 A:C70 4.6 1.8 1.0
P A:G69 4.7 3.0 1.0
C3' A:C70 4.7 1.8 1.0
OP2 A:G69 4.8 3.0 1.0
C1' A:G69 4.9 2.4 1.0
O4' A:G69 4.9 2.6 1.0

Phosphorus binding site 3 out of 40 in 1a51

Go back to Phosphorus Binding Sites List in 1a51
Phosphorus binding site 3 out of 40 in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P71

b:1.5
occ:1.00
P A:C71 0.0 1.5 1.0
OP1 A:C71 1.5 1.5 1.0
OP2 A:C71 1.5 1.5 1.0
O5' A:C71 1.6 1.3 1.0
O3' A:C70 1.6 1.8 1.0
C3' A:C70 2.6 1.8 1.0
C5' A:C71 2.6 1.3 1.0
H3' A:C70 2.6 1.7 1.0
H5'' A:C71 2.8 1.3 1.0
H5' A:C71 3.0 1.5 1.0
H6 A:C71 3.2 1.2 1.0
H2' A:C70 3.4 1.6 1.0
HO2' A:C70 3.4 1.9 1.0
C2' A:C70 3.4 1.7 1.0
H3' A:C71 3.7 1.0 1.0
O2' A:C70 3.9 1.8 1.0
C4' A:C70 3.9 2.0 1.0
C4' A:C71 3.9 1.2 1.0
H5'' A:C70 4.0 2.1 1.0
H4' A:C70 4.1 2.1 1.0
OP2 A:G72 4.2 1.0 1.0
C6 A:C71 4.2 1.1 1.0
C3' A:C71 4.3 1.0 1.0
H5 A:C71 4.4 1.2 1.0
O4' A:C71 4.4 1.2 1.0
C5' A:C70 4.5 2.2 1.0
N7 A:G72 4.7 0.8 1.0
H4' A:C71 4.7 1.2 1.0
C1' A:C70 4.8 1.9 1.0
C5 A:C71 4.8 1.1 1.0
O4' A:C70 5.0 2.1 1.0

Phosphorus binding site 4 out of 40 in 1a51

Go back to Phosphorus Binding Sites List in 1a51
Phosphorus binding site 4 out of 40 in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P72

b:0.9
occ:1.00
P A:G72 0.0 0.9 1.0
OP1 A:G72 1.5 0.9 1.0
OP2 A:G72 1.5 1.0 1.0
O5' A:G72 1.6 0.8 1.0
O3' A:C71 1.6 0.9 1.0
H3' A:C71 2.6 1.0 1.0
C3' A:C71 2.6 1.0 1.0
C5' A:G72 2.6 0.8 1.0
H5' A:G72 2.8 0.9 1.0
H8 A:G72 2.9 0.7 1.0
H5'' A:G72 3.1 0.9 1.0
HO2' A:C71 3.4 1.0 1.0
C2' A:C71 3.6 0.9 1.0
H2' A:C71 3.7 0.8 1.0
C4' A:C71 3.8 1.2 1.0
H5'' A:C71 3.9 1.3 1.0
C4' A:G72 3.9 0.7 1.0
H4' A:C71 4.0 1.2 1.0
C8 A:G72 4.0 0.7 1.0
O2' A:C71 4.0 0.9 1.0
O4' A:G72 4.1 0.6 1.0
H3' A:G72 4.1 0.7 1.0
C5' A:C71 4.2 1.3 1.0
O5' A:C71 4.4 1.3 1.0
C3' A:G72 4.6 0.6 1.0
H4' A:G72 4.7 0.7 1.0
N7 A:G72 4.8 0.8 1.0
C1' A:C71 4.9 1.0 1.0
O4' A:C71 5.0 1.2 1.0
OP1 A:C71 5.0 1.5 1.0
N9 A:G72 5.0 0.6 1.0
OP1 A:A101 5.0 1.7 1.0

Phosphorus binding site 5 out of 40 in 1a51

Go back to Phosphorus Binding Sites List in 1a51
Phosphorus binding site 5 out of 40 in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P73

b:0.7
occ:1.00
P A:A73 0.0 0.7 1.0
OP1 A:A73 1.5 0.9 1.0
OP2 A:A73 1.5 1.1 1.0
O5' A:A73 1.6 0.8 1.0
O3' A:G72 1.6 0.7 1.0
C3' A:G72 2.6 0.6 1.0
C5' A:A73 2.6 1.0 1.0
H5' A:A73 2.7 1.1 1.0
H3' A:G72 2.8 0.7 1.0
HO2' A:G72 2.9 0.6 1.0
H2' A:G72 3.1 0.5 1.0
C2' A:G72 3.2 0.5 1.0
H5'' A:A73 3.4 1.1 1.0
O2' A:G72 3.5 0.5 1.0
C4' A:A73 3.6 0.9 1.0
H4' A:A73 3.7 1.0 1.0
O4' A:A73 3.8 0.7 1.0
OP2 A:A101 3.9 1.7 1.0
C4' A:G72 4.0 0.7 1.0
H4' A:G72 4.1 0.7 1.0
H8 A:A73 4.2 0.7 1.0
H62 A:A101 4.4 1.2 1.0
H5'' A:G72 4.4 0.9 1.0
H5'' A:G100 4.6 2.3 1.0
C1' A:G72 4.6 0.5 1.0
N7 A:A101 4.7 1.2 1.0
C5' A:G72 4.7 0.8 1.0
O6 A:G102 4.8 1.0 1.0
N7 A:G102 4.9 1.0 1.0
O4' A:G72 4.9 0.6 1.0

Phosphorus binding site 6 out of 40 in 1a51

Go back to Phosphorus Binding Sites List in 1a51
Phosphorus binding site 6 out of 40 in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P74

b:1.2
occ:1.00
P A:U74 0.0 1.2 1.0
OP1 A:U74 1.5 1.4 1.0
OP2 A:U74 1.5 1.2 1.0
O5' A:U74 1.6 1.2 1.0
O3' A:A73 1.6 1.1 1.0
H3' A:A73 2.5 1.0 1.0
C3' A:A73 2.6 1.0 1.0
C5' A:U74 2.6 1.2 1.0
H5'' A:U74 2.9 1.4 1.0
H5' A:U74 2.9 1.2 1.0
C4' A:A73 3.7 0.9 1.0
HO2' A:A73 3.7 1.0 1.0
H5'' A:A73 3.7 1.1 1.0
C2' A:A73 3.8 0.9 1.0
H3' A:U74 3.8 1.2 1.0
H4' A:A73 3.8 1.0 1.0
H5' A:A73 3.9 1.1 1.0
H2' A:A73 3.9 0.9 1.0
C4' A:U74 3.9 1.2 1.0
H6 A:U74 4.0 1.1 1.0
C5' A:A73 4.0 1.0 1.0
OP2 A:G75 4.2 1.5 1.0
O2' A:A73 4.3 1.0 1.0
C3' A:U74 4.3 1.2 1.0
O4' A:U74 4.5 1.1 1.0
H4' A:U74 4.7 1.2 1.0
O3' A:U74 4.8 1.3 1.0
O4' A:A73 4.9 0.7 1.0
C1' A:A73 4.9 0.8 1.0
C6 A:U74 5.0 1.0 1.0

Phosphorus binding site 7 out of 40 in 1a51

Go back to Phosphorus Binding Sites List in 1a51
Phosphorus binding site 7 out of 40 in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 7 of Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P75

b:1.4
occ:1.00
P A:G75 0.0 1.4 1.0
OP1 A:G75 1.5 1.5 1.0
OP2 A:G75 1.5 1.5 1.0
O5' A:G75 1.6 1.4 1.0
O3' A:U74 1.6 1.3 1.0
H3' A:U74 2.6 1.2 1.0
C3' A:U74 2.6 1.2 1.0
C5' A:G75 2.6 1.4 1.0
H5' A:G75 2.8 1.5 1.0
H5'' A:G75 3.1 1.5 1.0
HO2' A:U74 3.4 1.5 1.0
H8 A:G75 3.5 1.3 1.0
C2' A:U74 3.5 1.2 1.0
H2' A:U74 3.6 1.2 1.0
C4' A:U74 3.9 1.2 1.0
C4' A:G75 3.9 1.4 1.0
O2' A:U74 4.0 1.2 1.0
O4' A:G75 4.1 1.4 1.0
H4' A:U74 4.1 1.2 1.0
H5'' A:U74 4.2 1.4 1.0
O5' A:U74 4.2 1.2 1.0
H3' A:G75 4.3 1.4 1.0
C5' A:U74 4.3 1.2 1.0
C8 A:G75 4.5 1.3 1.0
H4' A:G75 4.7 1.5 1.0
C3' A:G75 4.7 1.4 1.0
C1' A:U74 4.8 1.1 1.0
OP2 A:G76 4.9 1.5 1.0
O4' A:U74 4.9 1.1 1.0

Phosphorus binding site 8 out of 40 in 1a51

Go back to Phosphorus Binding Sites List in 1a51
Phosphorus binding site 8 out of 40 in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 8 of Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P76

b:1.5
occ:1.00
P A:G76 0.0 1.5 1.0
OP1 A:G76 1.5 1.6 1.0
OP2 A:G76 1.5 1.5 1.0
O5' A:G76 1.6 1.5 1.0
O3' A:G75 1.6 1.5 1.0
H3' A:G75 2.6 1.4 1.0
C3' A:G75 2.6 1.4 1.0
C5' A:G76 2.6 1.5 1.0
H5' A:G76 2.7 1.6 1.0
H5'' A:G76 3.2 1.6 1.0
H5'' A:G75 3.5 1.5 1.0
HO2' A:G75 3.6 1.5 1.0
H8 A:G76 3.6 1.4 1.0
C2' A:G75 3.7 1.4 1.0
C4' A:G75 3.8 1.4 1.0
H2' A:G75 3.8 1.4 1.0
O4' A:G76 3.8 1.4 1.0
C4' A:G76 3.8 1.5 1.0
H4' A:G75 4.0 1.5 1.0
C5' A:G75 4.1 1.4 1.0
O2' A:G75 4.1 1.5 1.0
H4' A:G76 4.4 1.5 1.0
C8 A:G76 4.6 1.4 1.0
O5' A:G75 4.6 1.4 1.0
H3' A:G76 4.8 1.5 1.0
O4' A:G75 4.9 1.4 1.0
C1' A:G75 4.9 1.4 1.0
C3' A:G76 5.0 1.5 1.0

Phosphorus binding site 9 out of 40 in 1a51

Go back to Phosphorus Binding Sites List in 1a51
Phosphorus binding site 9 out of 40 in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 9 of Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P77

b:1.5
occ:1.00
P A:U77 0.0 1.5 1.0
OP1 A:U77 1.5 1.6 1.0
OP2 A:U77 1.5 1.5 1.0
O5' A:U77 1.6 1.5 1.0
O3' A:G76 1.6 1.6 1.0
C3' A:G76 2.6 1.5 1.0
C5' A:U77 2.6 1.5 1.0
H3' A:G76 2.7 1.5 1.0
H5'' A:U77 2.8 1.6 1.0
H5' A:U77 3.0 1.5 1.0
H6 A:U77 3.2 1.4 1.0
HO2' A:G76 3.3 1.5 1.0
H2' A:G76 3.4 1.5 1.0
C2' A:G76 3.4 1.4 1.0
O2' A:G76 3.8 1.4 1.0
H3' A:U77 3.9 1.6 1.0
C4' A:U77 3.9 1.5 1.0
C4' A:G76 3.9 1.5 1.0
H5'' A:G76 3.9 1.6 1.0
H4' A:G76 4.1 1.5 1.0
C6 A:U77 4.2 1.4 1.0
O4' A:U77 4.3 1.4 1.0
H5 A:U77 4.3 1.4 1.0
C3' A:U77 4.4 1.5 1.0
H21 A:G98 4.4 1.5 1.0
C5' A:G76 4.5 1.5 1.0
C5 A:U77 4.7 1.4 1.0
H4' A:U77 4.7 1.5 1.0
C1' A:G76 4.8 1.4 1.0
H1 A:G98 4.8 1.4 1.0
OP2 A:A78 4.9 1.7 1.0
O4' A:G76 5.0 1.4 1.0

Phosphorus binding site 10 out of 40 in 1a51

Go back to Phosphorus Binding Sites List in 1a51
Phosphorus binding site 10 out of 40 in the Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 10 of Loop D/Loop E Arm of E. Coli 5S Rrna, uc(Nmr), 9 Structures within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P78

b:1.7
occ:1.00
P A:A78 0.0 1.7 1.0
OP1 A:A78 1.5 1.7 1.0
OP2 A:A78 1.5 1.7 1.0
O5' A:A78 1.6 1.7 1.0
O3' A:U77 1.6 1.6 1.0
H3' A:U77 2.6 1.6 1.0
C3' A:U77 2.6 1.5 1.0
C5' A:A78 2.6 1.7 1.0
H5' A:A78 2.7 1.7 1.0
H5'' A:A78 3.1 1.8 1.0
HO2' A:U77 3.3 1.6 1.0
H2' A:U77 3.5 1.5 1.0
C2' A:U77 3.5 1.5 1.0
O2' A:U77 3.9 1.5 1.0
C4' A:U77 3.9 1.5 1.0
C4' A:A78 3.9 1.7 1.0
H8 A:A78 3.9 1.6 1.0
H5'' A:U77 4.0 1.6 1.0
O4' A:A78 4.0 1.6 1.0
H4' A:U77 4.1 1.5 1.0
C5' A:U77 4.5 1.5 1.0
H4' A:A78 4.6 1.7 1.0
H3' A:A78 4.6 1.7 1.0
C1' A:U77 4.8 1.4 1.0
C3' A:A78 4.9 1.7 1.0
C8 A:A78 4.9 1.6 1.0
O5' A:U77 4.9 1.5 1.0
O4' A:U77 5.0 1.4 1.0

Reference:

A.Dallas, P.B.Moore. The Loop E-Loop D Region of Escherichia Coli 5S Rrna: the Solution Structure Reveals An Unusual Loop That May Be Important For Binding Ribosomal Proteins. Structure V. 5 1639 1997.
ISSN: ISSN 0969-2126
PubMed: 9438864
DOI: 10.1016/S0969-2126(97)00311-0
Page generated: Fri Sep 25 12:14:16 2020

Last articles

Na in 5XNP
Na in 5XPE
Na in 5XH7
Na in 5XH6
Na in 5XHA
Na in 5XH9
Na in 5XLJ
Na in 5XDX
Na in 5XH8
Na in 5XDQ
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy