Phosphorus in PDB 1a4t: Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures
Phosphorus Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
14;
Binding sites:
The binding sites of Phosphorus atom in the Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures
(pdb code 1a4t). This binding sites where shown within
5.0 Angstroms radius around Phosphorus atom.
In total 14 binding sites of Phosphorus where determined in the
Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures, PDB code: 1a4t:
Jump to Phosphorus binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Phosphorus binding site 1 out
of 14 in 1a4t
Go back to
Phosphorus Binding Sites List in 1a4t
Phosphorus binding site 1 out
of 14 in the Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 1 of Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P5
b:0.0
occ:1.00
|
P
|
A:C5
|
0.0
|
0.0
|
1.0
|
OP1
|
A:C5
|
1.5
|
0.0
|
1.0
|
OP2
|
A:C5
|
1.5
|
0.0
|
1.0
|
O3'
|
A:G4
|
1.6
|
0.0
|
1.0
|
O5'
|
A:C5
|
1.6
|
0.0
|
1.0
|
C5'
|
A:C5
|
2.7
|
0.0
|
1.0
|
C3'
|
A:G4
|
2.7
|
0.0
|
1.0
|
H3'
|
A:G4
|
2.8
|
0.0
|
1.0
|
H5''
|
A:C5
|
2.9
|
0.0
|
1.0
|
H5'
|
A:C5
|
2.9
|
0.0
|
1.0
|
HB1
|
B:ALA2
|
3.3
|
0.0
|
1.0
|
HB2
|
B:ARG5
|
3.4
|
0.0
|
1.0
|
HH11
|
B:ARG5
|
3.5
|
0.0
|
1.0
|
C2'
|
A:G4
|
3.5
|
0.0
|
1.0
|
HG2
|
B:ARG5
|
3.6
|
0.0
|
1.0
|
H2'
|
A:G4
|
3.6
|
0.0
|
1.0
|
H6
|
A:C5
|
3.6
|
0.0
|
1.0
|
HO2'
|
A:G4
|
3.7
|
0.0
|
1.0
|
O2'
|
A:G4
|
3.7
|
0.0
|
1.0
|
HA
|
B:ALA2
|
3.9
|
0.0
|
1.0
|
C4'
|
A:G4
|
3.9
|
0.0
|
1.0
|
HB3
|
B:ARG5
|
4.0
|
0.0
|
1.0
|
C4'
|
A:C5
|
4.0
|
0.0
|
1.0
|
HD3
|
B:ARG5
|
4.1
|
0.0
|
1.0
|
H3'
|
A:C5
|
4.1
|
0.0
|
1.0
|
CB
|
B:ARG5
|
4.1
|
0.0
|
1.0
|
CB
|
B:ALA2
|
4.1
|
0.0
|
1.0
|
HB3
|
B:ALA2
|
4.2
|
0.0
|
1.0
|
O5'
|
A:G4
|
4.2
|
0.0
|
1.0
|
CG
|
B:ARG5
|
4.3
|
0.0
|
1.0
|
H4'
|
A:G4
|
4.3
|
0.0
|
1.0
|
NH1
|
B:ARG5
|
4.4
|
0.0
|
1.0
|
HO5'
|
A:G4
|
4.4
|
0.0
|
1.0
|
C5'
|
A:G4
|
4.5
|
0.0
|
1.0
|
CA
|
B:ALA2
|
4.6
|
0.0
|
1.0
|
C3'
|
A:C5
|
4.6
|
0.0
|
1.0
|
C6
|
A:C5
|
4.6
|
0.0
|
1.0
|
H5'
|
A:G4
|
4.6
|
0.0
|
1.0
|
O4'
|
A:C5
|
4.7
|
0.0
|
1.0
|
H5
|
A:C5
|
4.7
|
0.0
|
1.0
|
CD
|
B:ARG5
|
4.7
|
0.0
|
1.0
|
HH12
|
B:ARG5
|
4.8
|
0.0
|
1.0
|
H4'
|
A:C5
|
4.8
|
0.0
|
1.0
|
C1'
|
A:G4
|
4.9
|
0.0
|
1.0
|
N
|
B:ALA2
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 2 out
of 14 in 1a4t
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Phosphorus Binding Sites List in 1a4t
Phosphorus binding site 2 out
of 14 in the Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 2 of Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P6
b:0.0
occ:1.00
|
P
|
A:G6
|
0.0
|
0.0
|
1.0
|
OP1
|
A:G6
|
1.5
|
0.0
|
1.0
|
OP2
|
A:G6
|
1.5
|
0.0
|
1.0
|
O5'
|
A:G6
|
1.6
|
0.0
|
1.0
|
O3'
|
A:C5
|
1.6
|
0.0
|
1.0
|
C5'
|
A:G6
|
2.6
|
0.0
|
1.0
|
C3'
|
A:C5
|
2.7
|
0.0
|
1.0
|
H3'
|
A:C5
|
2.8
|
0.0
|
1.0
|
H5''
|
A:G6
|
2.8
|
0.0
|
1.0
|
H5'
|
A:G6
|
3.0
|
0.0
|
1.0
|
HH21
|
B:ARG9
|
3.2
|
0.0
|
1.0
|
HG3
|
B:ARG5
|
3.3
|
0.0
|
1.0
|
H2'
|
A:C5
|
3.4
|
0.0
|
1.0
|
C2'
|
A:C5
|
3.4
|
0.0
|
1.0
|
HG2
|
B:ARG5
|
3.4
|
0.0
|
1.0
|
HB3
|
B:ARG5
|
3.6
|
0.0
|
1.0
|
O2'
|
A:C5
|
3.8
|
0.0
|
1.0
|
CG
|
B:ARG5
|
3.8
|
0.0
|
1.0
|
C4'
|
A:G6
|
3.9
|
0.0
|
1.0
|
C4'
|
A:C5
|
4.0
|
0.0
|
1.0
|
HB3
|
B:ALA2
|
4.0
|
0.0
|
1.0
|
HB2
|
B:ARG6
|
4.1
|
0.0
|
1.0
|
H4'
|
A:G6
|
4.1
|
0.0
|
1.0
|
NH2
|
B:ARG9
|
4.1
|
0.0
|
1.0
|
HO2'
|
A:C5
|
4.2
|
0.0
|
1.0
|
HA
|
B:ARG6
|
4.2
|
0.0
|
1.0
|
H4'
|
A:C5
|
4.2
|
0.0
|
1.0
|
CB
|
B:ARG5
|
4.3
|
0.0
|
1.0
|
H5''
|
A:C5
|
4.3
|
0.0
|
1.0
|
H8
|
A:G6
|
4.4
|
0.0
|
1.0
|
O4'
|
A:G6
|
4.4
|
0.0
|
1.0
|
N
|
B:ARG6
|
4.4
|
0.0
|
1.0
|
HE
|
B:ARG9
|
4.5
|
0.0
|
1.0
|
HH22
|
B:ARG9
|
4.5
|
0.0
|
1.0
|
HB2
|
B:ALA2
|
4.6
|
0.0
|
1.0
|
H
|
B:ARG6
|
4.6
|
0.0
|
1.0
|
C5'
|
A:C5
|
4.6
|
0.0
|
1.0
|
C
|
B:ARG5
|
4.6
|
0.0
|
1.0
|
CB
|
B:ALA2
|
4.6
|
0.0
|
1.0
|
HB1
|
B:ALA2
|
4.7
|
0.0
|
1.0
|
CA
|
B:ARG6
|
4.7
|
0.0
|
1.0
|
C1'
|
A:C5
|
4.8
|
0.0
|
1.0
|
O5'
|
A:C5
|
4.8
|
0.0
|
1.0
|
CB
|
B:ARG6
|
5.0
|
0.0
|
1.0
|
O
|
B:ARG5
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 3 out
of 14 in 1a4t
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Phosphorus Binding Sites List in 1a4t
Phosphorus binding site 3 out
of 14 in the Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 3 of Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P7
b:0.0
occ:1.00
|
P
|
A:C7
|
0.0
|
0.0
|
1.0
|
OP2
|
A:C7
|
1.5
|
0.0
|
1.0
|
OP1
|
A:C7
|
1.5
|
0.0
|
1.0
|
O5'
|
A:C7
|
1.6
|
0.0
|
1.0
|
O3'
|
A:G6
|
1.6
|
0.0
|
1.0
|
C3'
|
A:G6
|
2.7
|
0.0
|
1.0
|
C5'
|
A:C7
|
2.7
|
0.0
|
1.0
|
H3'
|
A:G6
|
2.8
|
0.0
|
1.0
|
HH22
|
B:ARG9
|
3.0
|
0.0
|
1.0
|
H5''
|
A:C7
|
3.0
|
0.0
|
1.0
|
H5'
|
A:C7
|
3.0
|
0.0
|
1.0
|
HH11
|
B:ARG6
|
3.3
|
0.0
|
1.0
|
HO2'
|
A:G6
|
3.3
|
0.0
|
1.0
|
HH12
|
B:ARG9
|
3.5
|
0.0
|
1.0
|
C2'
|
A:G6
|
3.6
|
0.0
|
1.0
|
H3'
|
A:C7
|
3.7
|
0.0
|
1.0
|
H2'
|
A:G6
|
3.8
|
0.0
|
1.0
|
H5'
|
A:G6
|
3.8
|
0.0
|
1.0
|
C4'
|
A:G6
|
3.8
|
0.0
|
1.0
|
HH12
|
B:ARG6
|
3.9
|
0.0
|
1.0
|
H6
|
A:C7
|
3.9
|
0.0
|
1.0
|
O2'
|
A:G6
|
3.9
|
0.0
|
1.0
|
NH1
|
B:ARG6
|
3.9
|
0.0
|
1.0
|
H4'
|
A:G6
|
4.0
|
0.0
|
1.0
|
NH2
|
B:ARG9
|
4.0
|
0.0
|
1.0
|
C4'
|
A:C7
|
4.0
|
0.0
|
1.0
|
HD2
|
B:ARG6
|
4.3
|
0.0
|
1.0
|
C3'
|
A:C7
|
4.3
|
0.0
|
1.0
|
NH1
|
B:ARG9
|
4.4
|
0.0
|
1.0
|
C5'
|
A:G6
|
4.4
|
0.0
|
1.0
|
O4'
|
A:C7
|
4.5
|
0.0
|
1.0
|
HH21
|
B:ARG9
|
4.6
|
0.0
|
1.0
|
HG3
|
B:ARG6
|
4.7
|
0.0
|
1.0
|
CZ
|
B:ARG9
|
4.7
|
0.0
|
1.0
|
O3'
|
A:C7
|
4.8
|
0.0
|
1.0
|
H4'
|
A:C7
|
4.8
|
0.0
|
1.0
|
C1'
|
A:G6
|
4.9
|
0.0
|
1.0
|
C6
|
A:C7
|
5.0
|
0.0
|
1.0
|
O4'
|
A:G6
|
5.0
|
0.0
|
1.0
|
H5''
|
A:G6
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 4 out
of 14 in 1a4t
Go back to
Phosphorus Binding Sites List in 1a4t
Phosphorus binding site 4 out
of 14 in the Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 4 of Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P8
b:0.0
occ:1.00
|
P
|
A:U8
|
0.0
|
0.0
|
1.0
|
OP1
|
A:U8
|
1.5
|
0.0
|
1.0
|
OP2
|
A:U8
|
1.5
|
0.0
|
1.0
|
O3'
|
A:C7
|
1.6
|
0.0
|
1.0
|
O5'
|
A:U8
|
1.6
|
0.0
|
1.0
|
HO2'
|
A:C7
|
2.6
|
0.0
|
1.0
|
C5'
|
A:U8
|
2.6
|
0.0
|
1.0
|
C3'
|
A:C7
|
2.8
|
0.0
|
1.0
|
H5''
|
A:U8
|
2.9
|
0.0
|
1.0
|
H5'
|
A:U8
|
3.0
|
0.0
|
1.0
|
H4'
|
A:C7
|
3.3
|
0.0
|
1.0
|
O2'
|
A:C7
|
3.3
|
0.0
|
1.0
|
C2'
|
A:C7
|
3.5
|
0.0
|
1.0
|
C4'
|
A:C7
|
3.5
|
0.0
|
1.0
|
H3'
|
A:C7
|
3.6
|
0.0
|
1.0
|
HH22
|
B:ARG6
|
3.6
|
0.0
|
1.0
|
HH12
|
B:ARG6
|
3.7
|
0.0
|
1.0
|
H5''
|
A:C7
|
3.8
|
0.0
|
1.0
|
C4'
|
A:U8
|
4.0
|
0.0
|
1.0
|
H2'
|
A:C7
|
4.0
|
0.0
|
1.0
|
H4'
|
A:U8
|
4.2
|
0.0
|
1.0
|
C5'
|
A:C7
|
4.2
|
0.0
|
1.0
|
H6
|
A:U8
|
4.4
|
0.0
|
1.0
|
O4'
|
A:U8
|
4.5
|
0.0
|
1.0
|
NH2
|
B:ARG6
|
4.6
|
0.0
|
1.0
|
NH1
|
B:ARG6
|
4.6
|
0.0
|
1.0
|
O4'
|
A:C7
|
4.8
|
0.0
|
1.0
|
C1'
|
A:C7
|
4.8
|
0.0
|
1.0
|
O5'
|
A:C7
|
4.8
|
0.0
|
1.0
|
HH12
|
B:ARG10
|
4.9
|
0.0
|
1.0
|
|
Phosphorus binding site 5 out
of 14 in 1a4t
Go back to
Phosphorus Binding Sites List in 1a4t
Phosphorus binding site 5 out
of 14 in the Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 5 of Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P9
b:0.0
occ:1.00
|
P
|
A:G9
|
0.0
|
0.0
|
1.0
|
OP2
|
A:G9
|
1.5
|
0.0
|
1.0
|
OP1
|
A:G9
|
1.5
|
0.0
|
1.0
|
O3'
|
A:U8
|
1.6
|
0.0
|
1.0
|
O5'
|
A:G9
|
1.6
|
0.0
|
1.0
|
C5'
|
A:G9
|
2.6
|
0.0
|
1.0
|
C3'
|
A:U8
|
2.7
|
0.0
|
1.0
|
H3'
|
A:U8
|
2.8
|
0.0
|
1.0
|
H5'
|
A:G9
|
2.9
|
0.0
|
1.0
|
H5''
|
A:G9
|
2.9
|
0.0
|
1.0
|
HH22
|
B:ARG10
|
3.1
|
0.0
|
1.0
|
H8
|
A:G9
|
3.5
|
0.0
|
1.0
|
C2'
|
A:U8
|
3.6
|
0.0
|
1.0
|
H5'
|
A:U8
|
3.8
|
0.0
|
1.0
|
H2'
|
A:U8
|
3.8
|
0.0
|
1.0
|
C4'
|
A:U8
|
3.8
|
0.0
|
1.0
|
H3'
|
A:G9
|
3.9
|
0.0
|
1.0
|
O2'
|
A:U8
|
3.9
|
0.0
|
1.0
|
NH2
|
B:ARG10
|
4.0
|
0.0
|
1.0
|
C4'
|
A:G9
|
4.0
|
0.0
|
1.0
|
H4'
|
A:U8
|
4.0
|
0.0
|
1.0
|
OP2
|
A:A10
|
4.1
|
0.0
|
1.0
|
HO2'
|
A:U8
|
4.2
|
0.0
|
1.0
|
HH21
|
B:ARG10
|
4.3
|
0.0
|
1.0
|
C5'
|
A:U8
|
4.3
|
0.0
|
1.0
|
C3'
|
A:G9
|
4.5
|
0.0
|
1.0
|
O4'
|
A:G9
|
4.5
|
0.0
|
1.0
|
C8
|
A:G9
|
4.5
|
0.0
|
1.0
|
HH12
|
B:ARG10
|
4.6
|
0.0
|
1.0
|
H5''
|
A:U8
|
4.8
|
0.0
|
1.0
|
H4'
|
A:G9
|
4.8
|
0.0
|
1.0
|
C1'
|
A:U8
|
4.9
|
0.0
|
1.0
|
O4'
|
A:U8
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 6 out
of 14 in 1a4t
Go back to
Phosphorus Binding Sites List in 1a4t
Phosphorus binding site 6 out
of 14 in the Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 6 of Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P10
b:0.0
occ:1.00
|
P
|
A:A10
|
0.0
|
0.0
|
1.0
|
OP1
|
A:A10
|
1.5
|
0.0
|
1.0
|
OP2
|
A:A10
|
1.5
|
0.0
|
1.0
|
O3'
|
A:G9
|
1.6
|
0.0
|
1.0
|
O5'
|
A:A10
|
1.6
|
0.0
|
1.0
|
C5'
|
A:A10
|
2.6
|
0.0
|
1.0
|
C3'
|
A:G9
|
2.7
|
0.0
|
1.0
|
H5'
|
A:A10
|
2.8
|
0.0
|
1.0
|
H3'
|
A:G9
|
2.8
|
0.0
|
1.0
|
H5''
|
A:A10
|
3.1
|
0.0
|
1.0
|
H5''
|
A:G9
|
3.5
|
0.0
|
1.0
|
H3'
|
A:A10
|
3.6
|
0.0
|
1.0
|
C4'
|
A:G9
|
3.7
|
0.0
|
1.0
|
HO2'
|
A:G9
|
3.7
|
0.0
|
1.0
|
C2'
|
A:G9
|
3.9
|
0.0
|
1.0
|
H4'
|
A:G9
|
3.9
|
0.0
|
1.0
|
C4'
|
A:A10
|
3.9
|
0.0
|
1.0
|
C5'
|
A:G9
|
4.0
|
0.0
|
1.0
|
H2'
|
A:G9
|
4.1
|
0.0
|
1.0
|
O2'
|
A:G9
|
4.2
|
0.0
|
1.0
|
O5'
|
A:G9
|
4.2
|
0.0
|
1.0
|
C3'
|
A:A10
|
4.2
|
0.0
|
1.0
|
OP1
|
A:C11
|
4.3
|
0.0
|
1.0
|
H4'
|
A:A10
|
4.4
|
0.0
|
1.0
|
OP2
|
A:C11
|
4.5
|
0.0
|
1.0
|
P
|
A:C11
|
4.8
|
0.0
|
1.0
|
O4'
|
A:G9
|
4.9
|
0.0
|
1.0
|
O3'
|
A:A10
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 7 out
of 14 in 1a4t
Go back to
Phosphorus Binding Sites List in 1a4t
Phosphorus binding site 7 out
of 14 in the Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 7 of Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P11
b:0.0
occ:1.00
|
P
|
A:C11
|
0.0
|
0.0
|
1.0
|
OP1
|
A:C11
|
1.5
|
0.0
|
1.0
|
OP2
|
A:C11
|
1.5
|
0.0
|
1.0
|
O5'
|
A:C11
|
1.6
|
0.0
|
1.0
|
O3'
|
A:A10
|
1.6
|
0.0
|
1.0
|
C3'
|
A:A10
|
2.6
|
0.0
|
1.0
|
C5'
|
A:C11
|
2.7
|
0.0
|
1.0
|
H3'
|
A:A10
|
2.7
|
0.0
|
1.0
|
H5''
|
A:C11
|
2.7
|
0.0
|
1.0
|
H3'
|
A:C11
|
3.0
|
0.0
|
1.0
|
H4'
|
A:A10
|
3.4
|
0.0
|
1.0
|
H5'
|
A:C11
|
3.4
|
0.0
|
1.0
|
C4'
|
A:A10
|
3.5
|
0.0
|
1.0
|
O5'
|
A:A10
|
3.7
|
0.0
|
1.0
|
HH21
|
B:ARG10
|
3.7
|
0.0
|
1.0
|
HB3
|
B:ALA14
|
3.7
|
0.0
|
1.0
|
C4'
|
A:C11
|
3.8
|
0.0
|
1.0
|
C3'
|
A:C11
|
3.9
|
0.0
|
1.0
|
C2'
|
A:A10
|
3.9
|
0.0
|
1.0
|
H2'
|
A:C11
|
4.0
|
0.0
|
1.0
|
O2'
|
A:A10
|
4.1
|
0.0
|
1.0
|
C5'
|
A:A10
|
4.2
|
0.0
|
1.0
|
H2'
|
A:G9
|
4.2
|
0.0
|
1.0
|
HB1
|
B:ALA14
|
4.2
|
0.0
|
1.0
|
H3'
|
A:G9
|
4.3
|
0.0
|
1.0
|
OP2
|
A:A12
|
4.3
|
0.0
|
1.0
|
HE
|
B:ARG10
|
4.4
|
0.0
|
1.0
|
O4'
|
A:C11
|
4.4
|
0.0
|
1.0
|
H6
|
A:C11
|
4.5
|
0.0
|
1.0
|
CB
|
B:ALA14
|
4.5
|
0.0
|
1.0
|
H2'
|
A:A10
|
4.5
|
0.0
|
1.0
|
NH2
|
B:ARG10
|
4.5
|
0.0
|
1.0
|
C2'
|
A:C11
|
4.6
|
0.0
|
1.0
|
OP2
|
A:A10
|
4.7
|
0.0
|
1.0
|
H4'
|
A:C11
|
4.7
|
0.0
|
1.0
|
O4'
|
A:A10
|
4.7
|
0.0
|
1.0
|
P
|
A:A10
|
4.8
|
0.0
|
1.0
|
H5'
|
A:A10
|
4.9
|
0.0
|
1.0
|
C1'
|
A:A10
|
4.9
|
0.0
|
1.0
|
HB2
|
B:ALA14
|
4.9
|
0.0
|
1.0
|
O3'
|
A:C11
|
4.9
|
0.0
|
1.0
|
NE
|
B:ARG10
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 8 out
of 14 in 1a4t
Go back to
Phosphorus Binding Sites List in 1a4t
Phosphorus binding site 8 out
of 14 in the Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 8 of Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P12
b:0.0
occ:1.00
|
P
|
A:A12
|
0.0
|
0.0
|
1.0
|
OP2
|
A:A12
|
1.5
|
0.0
|
1.0
|
OP1
|
A:A12
|
1.5
|
0.0
|
1.0
|
O3'
|
A:C11
|
1.6
|
0.0
|
1.0
|
O5'
|
A:A12
|
1.6
|
0.0
|
1.0
|
C5'
|
A:A12
|
2.6
|
0.0
|
1.0
|
C3'
|
A:C11
|
2.7
|
0.0
|
1.0
|
H5'
|
A:A12
|
2.8
|
0.0
|
1.0
|
HD1
|
B:HIS7
|
2.9
|
0.0
|
1.0
|
H3'
|
A:C11
|
2.9
|
0.0
|
1.0
|
H5''
|
A:A12
|
2.9
|
0.0
|
1.0
|
HO2'
|
A:C11
|
3.5
|
0.0
|
1.0
|
H4'
|
A:C11
|
3.5
|
0.0
|
1.0
|
N1
|
A:G9
|
3.6
|
0.0
|
1.0
|
C4'
|
A:C11
|
3.6
|
0.0
|
1.0
|
O2'
|
A:A10
|
3.6
|
0.0
|
1.0
|
H5''
|
A:C11
|
3.7
|
0.0
|
1.0
|
H1
|
A:G9
|
3.7
|
0.0
|
1.0
|
C2
|
A:G9
|
3.7
|
0.0
|
1.0
|
ND1
|
B:HIS7
|
3.7
|
0.0
|
1.0
|
HO2'
|
A:A10
|
3.8
|
0.0
|
1.0
|
H8
|
A:A12
|
3.8
|
0.0
|
1.0
|
C2'
|
A:C11
|
3.9
|
0.0
|
1.0
|
C6
|
A:G9
|
4.0
|
0.0
|
1.0
|
C4'
|
A:A12
|
4.0
|
0.0
|
1.0
|
O2'
|
A:C11
|
4.0
|
0.0
|
1.0
|
N2
|
A:G9
|
4.1
|
0.0
|
1.0
|
H21
|
A:G9
|
4.1
|
0.0
|
1.0
|
N3
|
A:G9
|
4.2
|
0.0
|
1.0
|
C5'
|
A:C11
|
4.2
|
0.0
|
1.0
|
HE
|
B:ARG10
|
4.2
|
0.0
|
1.0
|
HB2
|
B:HIS7
|
4.2
|
0.0
|
1.0
|
O4'
|
A:A12
|
4.3
|
0.0
|
1.0
|
C5
|
A:G9
|
4.4
|
0.0
|
1.0
|
H3'
|
A:A12
|
4.4
|
0.0
|
1.0
|
HE1
|
B:HIS7
|
4.4
|
0.0
|
1.0
|
C4
|
A:G9
|
4.4
|
0.0
|
1.0
|
O6
|
A:G9
|
4.5
|
0.0
|
1.0
|
HD3
|
B:ARG10
|
4.5
|
0.0
|
1.0
|
CE1
|
B:HIS7
|
4.5
|
0.0
|
1.0
|
H2'
|
A:C11
|
4.5
|
0.0
|
1.0
|
H22
|
A:G9
|
4.6
|
0.0
|
1.0
|
CG
|
B:HIS7
|
4.7
|
0.0
|
1.0
|
HA
|
B:HIS7
|
4.7
|
0.0
|
1.0
|
H4'
|
A:A12
|
4.7
|
0.0
|
1.0
|
C3'
|
A:A12
|
4.8
|
0.0
|
1.0
|
O4'
|
A:C11
|
4.8
|
0.0
|
1.0
|
C2'
|
A:A10
|
4.8
|
0.0
|
1.0
|
C1'
|
A:C11
|
4.8
|
0.0
|
1.0
|
H1'
|
A:C11
|
4.8
|
0.0
|
1.0
|
C8
|
A:A12
|
4.9
|
0.0
|
1.0
|
CB
|
B:HIS7
|
4.9
|
0.0
|
1.0
|
H2'
|
A:A10
|
4.9
|
0.0
|
1.0
|
O3'
|
A:A10
|
4.9
|
0.0
|
1.0
|
OP2
|
A:C11
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 9 out
of 14 in 1a4t
Go back to
Phosphorus Binding Sites List in 1a4t
Phosphorus binding site 9 out
of 14 in the Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 9 of Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P13
b:0.0
occ:1.00
|
P
|
A:A13
|
0.0
|
0.0
|
1.0
|
OP2
|
A:A13
|
1.5
|
0.0
|
1.0
|
OP1
|
A:A13
|
1.5
|
0.0
|
1.0
|
O5'
|
A:A13
|
1.6
|
0.0
|
1.0
|
O3'
|
A:A12
|
1.6
|
0.0
|
1.0
|
C5'
|
A:A13
|
2.6
|
0.0
|
1.0
|
C3'
|
A:A12
|
2.7
|
0.0
|
1.0
|
H3'
|
A:A12
|
2.7
|
0.0
|
1.0
|
H5'
|
A:A13
|
2.8
|
0.0
|
1.0
|
H5''
|
A:A13
|
3.0
|
0.0
|
1.0
|
H21
|
A:G9
|
3.4
|
0.0
|
1.0
|
H8
|
A:A13
|
3.4
|
0.0
|
1.0
|
HB3
|
B:LYS3
|
3.5
|
0.0
|
1.0
|
H5''
|
A:A12
|
3.6
|
0.0
|
1.0
|
C2'
|
A:A12
|
3.7
|
0.0
|
1.0
|
HD2
|
B:LYS3
|
3.7
|
0.0
|
1.0
|
H2'
|
A:A12
|
3.7
|
0.0
|
1.0
|
C4'
|
A:A12
|
3.8
|
0.0
|
1.0
|
HG3
|
B:LYS3
|
3.9
|
0.0
|
1.0
|
C4'
|
A:A13
|
4.0
|
0.0
|
1.0
|
N2
|
A:G9
|
4.1
|
0.0
|
1.0
|
O2'
|
A:A12
|
4.1
|
0.0
|
1.0
|
H22
|
A:G9
|
4.1
|
0.0
|
1.0
|
H4'
|
A:A12
|
4.1
|
0.0
|
1.0
|
H3'
|
A:A13
|
4.2
|
0.0
|
1.0
|
C5'
|
A:A12
|
4.2
|
0.0
|
1.0
|
O4'
|
A:A13
|
4.3
|
0.0
|
1.0
|
CB
|
B:LYS3
|
4.4
|
0.0
|
1.0
|
HO2'
|
A:A12
|
4.4
|
0.0
|
1.0
|
C8
|
A:A13
|
4.4
|
0.0
|
1.0
|
CG
|
B:LYS3
|
4.5
|
0.0
|
1.0
|
CD
|
B:LYS3
|
4.6
|
0.0
|
1.0
|
C3'
|
A:A13
|
4.7
|
0.0
|
1.0
|
HB2
|
B:LYS3
|
4.7
|
0.0
|
1.0
|
H4'
|
A:A13
|
4.8
|
0.0
|
1.0
|
C1'
|
A:A12
|
4.9
|
0.0
|
1.0
|
OP2
|
A:A14
|
5.0
|
0.0
|
1.0
|
O4'
|
A:A12
|
5.0
|
0.0
|
1.0
|
O5'
|
A:A12
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 10 out
of 14 in 1a4t
Go back to
Phosphorus Binding Sites List in 1a4t
Phosphorus binding site 10 out
of 14 in the Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 10 of Solution Structure of Phage P22 N Peptide-Box B Rna Complex, uc(Nmr), 20 Structures within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P14
b:0.0
occ:1.00
|
P
|
A:A14
|
0.0
|
0.0
|
1.0
|
OP1
|
A:A14
|
1.5
|
0.0
|
1.0
|
OP2
|
A:A14
|
1.5
|
0.0
|
1.0
|
O5'
|
A:A14
|
1.6
|
0.0
|
1.0
|
O3'
|
A:A13
|
1.6
|
0.0
|
1.0
|
C5'
|
A:A14
|
2.6
|
0.0
|
1.0
|
C3'
|
A:A13
|
2.6
|
0.0
|
1.0
|
H3'
|
A:A13
|
2.7
|
0.0
|
1.0
|
H5'
|
A:A14
|
2.8
|
0.0
|
1.0
|
H5''
|
A:A14
|
3.0
|
0.0
|
1.0
|
H8
|
A:A14
|
3.2
|
0.0
|
1.0
|
C2'
|
A:A13
|
3.6
|
0.0
|
1.0
|
H2'
|
A:A13
|
3.6
|
0.0
|
1.0
|
H5''
|
A:A13
|
3.9
|
0.0
|
1.0
|
C4'
|
A:A13
|
3.9
|
0.0
|
1.0
|
C4'
|
A:A14
|
4.0
|
0.0
|
1.0
|
H3'
|
A:A14
|
4.1
|
0.0
|
1.0
|
O2'
|
A:A13
|
4.2
|
0.0
|
1.0
|
C8
|
A:A14
|
4.2
|
0.0
|
1.0
|
H4'
|
A:A13
|
4.2
|
0.0
|
1.0
|
C5'
|
A:A13
|
4.3
|
0.0
|
1.0
|
HE3
|
B:LYS3
|
4.3
|
0.0
|
1.0
|
O4'
|
A:A14
|
4.4
|
0.0
|
1.0
|
HO2'
|
A:A13
|
4.5
|
0.0
|
1.0
|
O5'
|
A:A13
|
4.6
|
0.0
|
1.0
|
C3'
|
A:A14
|
4.7
|
0.0
|
1.0
|
H4'
|
A:A14
|
4.8
|
0.0
|
1.0
|
N7
|
A:A14
|
4.9
|
0.0
|
1.0
|
C1'
|
A:A13
|
4.9
|
0.0
|
1.0
|
HD22
|
B:ASN1
|
5.0
|
0.0
|
1.0
|
O4'
|
A:A13
|
5.0
|
0.0
|
1.0
|
|
Reference:
Z.Cai,
A.Gorin,
R.Frederick,
X.Ye,
W.Hu,
A.Majumdar,
A.Kettani,
D.J.Patel.
Solution Structure of P22 Transcriptional Antitermination N Peptide-Boxb Rna Complex. Nat.Struct.Biol. V. 5 203 1998.
ISSN: ISSN 1072-8368
PubMed: 9501914
DOI: 10.1038/NSB0398-203
Page generated: Fri Sep 25 12:12:55 2020
|