Phosphorus in PDB 1a3v: Staphylococcal Nuclease, Cyclopentane Thiol Disulfide to V23C Variant

Enzymatic activity of Staphylococcal Nuclease, Cyclopentane Thiol Disulfide to V23C Variant

All present enzymatic activity of Staphylococcal Nuclease, Cyclopentane Thiol Disulfide to V23C Variant:
3.1.31.1;

Protein crystallography data

The structure of Staphylococcal Nuclease, Cyclopentane Thiol Disulfide to V23C Variant, PDB code: 1a3v was solved by R.Wynn, P.C.Harkins, F.M.Richards, R.O.Fox, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 6.00 / 2.20
Space group P 41
Cell size a, b, c (Å), α, β, γ (°) 48.200, 48.200, 63.200, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / n/a

Phosphorus Binding Sites:

The binding sites of Phosphorus atom in the Staphylococcal Nuclease, Cyclopentane Thiol Disulfide to V23C Variant (pdb code 1a3v). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 2 binding sites of Phosphorus where determined in the Staphylococcal Nuclease, Cyclopentane Thiol Disulfide to V23C Variant, PDB code: 1a3v:
Jump to Phosphorus binding site number: 1; 2;

Phosphorus binding site 1 out of 2 in 1a3v

Go back to Phosphorus Binding Sites List in 1a3v
Phosphorus binding site 1 out of 2 in the Staphylococcal Nuclease, Cyclopentane Thiol Disulfide to V23C Variant


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Staphylococcal Nuclease, Cyclopentane Thiol Disulfide to V23C Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P151

b:30.6
occ:1.00
P2 A:THP151 0.0 30.6 1.0
O4P A:THP151 1.4 40.7 1.0
O5P A:THP151 1.5 32.1 1.0
O6P A:THP151 1.5 34.4 1.0
O5' A:THP151 1.7 34.5 1.0
HE A:ARG35 2.5 0.0 1.0
HH21 A:ARG35 2.6 0.0 1.0
H1 A:HOH216 2.7 0.0 1.0
C5' A:THP151 2.7 32.2 1.0
HH22 A:ARG87 3.1 0.0 1.0
HH12 A:ARG87 3.1 0.0 1.0
NE A:ARG35 3.5 18.6 1.0
CA A:CA150 3.5 36.8 1.0
O A:HOH216 3.5 37.2 1.0
NH2 A:ARG35 3.5 19.7 1.0
C4' A:THP151 3.9 31.1 1.0
CZ A:ARG35 4.0 20.3 1.0
NH2 A:ARG87 4.0 14.6 1.0
NH1 A:ARG87 4.0 19.4 1.0
H2 A:HOH216 4.1 0.0 1.0
HH22 A:ARG35 4.4 0.0 1.0
HH A:TYR113 4.4 0.0 1.0
O4' A:THP151 4.5 29.5 1.0
CZ A:ARG87 4.5 18.9 1.0
CD A:ARG35 4.6 15.9 1.0
OD2 A:ASP21 4.7 12.3 1.0
HH21 A:ARG87 4.8 0.0 1.0
HH11 A:ARG87 4.8 0.0 1.0
OH A:TYR113 4.9 23.2 1.0

Phosphorus binding site 2 out of 2 in 1a3v

Go back to Phosphorus Binding Sites List in 1a3v
Phosphorus binding site 2 out of 2 in the Staphylococcal Nuclease, Cyclopentane Thiol Disulfide to V23C Variant


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Staphylococcal Nuclease, Cyclopentane Thiol Disulfide to V23C Variant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P151

b:34.0
occ:1.00
P1 A:THP151 0.0 34.0 1.0
O1P A:THP151 1.5 35.5 1.0
O2P A:THP151 1.5 31.7 1.0
O3P A:THP151 1.5 36.3 1.0
O3' A:THP151 1.7 32.9 1.0
HH A:TYR85 2.7 0.0 1.0
C3' A:THP151 2.7 29.8 1.0
HZ2 A:LYS84 2.8 0.0 1.0
C4' A:THP151 3.4 31.1 1.0
OH A:TYR85 3.7 29.4 1.0
NZ A:LYS84 3.7 42.3 1.0
C2' A:THP151 3.9 26.1 1.0
CE A:LYS84 4.0 38.2 1.0
HZ1 A:LYS84 4.3 0.0 1.0
CE2 A:TYR85 4.3 30.6 1.0
HZ3 A:LYS84 4.4 0.0 1.0
O4' A:THP151 4.4 29.5 1.0
CZ A:TYR85 4.5 30.0 1.0
C5' A:THP151 4.5 32.2 1.0
C1' A:THP151 4.6 27.6 1.0
H2 A:HOH237 4.6 0.0 1.0
O A:HOH237 4.9 53.1 1.0
H1 A:HOH237 5.0 0.0 1.0

Reference:

R.Wynn, P.C.Harkins, F.M.Richards, R.O.Fox. Comparison of Straight Chain and Cyclic Unnatural Amino Acids Embedded in the Core of Staphylococcal Nuclease. Protein Sci. V. 6 1621 1997.
ISSN: ISSN 0961-8368
PubMed: 9260275
Page generated: Fri Sep 25 12:10:53 2020

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