Phosphorus in PDB 1a02: Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna

Protein crystallography data

The structure of Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna, PDB code: 1a02 was solved by L.Chen, J.N.M.Glover, P.G.Hogan, A.Rao, S.C.Harrison, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 64.660, 85.460, 83.370, 90.00, 112.03, 90.00
R / Rfree (%) 24.6 / 30.3

Phosphorus Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 38;

Binding sites:

The binding sites of Phosphorus atom in the Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna (pdb code 1a02). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 38 binding sites of Phosphorus where determined in the Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna, PDB code: 1a02:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Phosphorus binding site 1 out of 38 in 1a02

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Phosphorus binding site 1 out of 38 in the Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4002

b:57.0
occ:1.00
P A:DT4002 0.0 57.0 1.0
OP2 A:DT4002 1.5 57.1 1.0
OP1 A:DT4002 1.5 54.8 1.0
O5' A:DT4002 1.6 55.1 1.0
O3' A:DT4001 1.6 54.1 1.0
C5' A:DT4002 2.6 51.4 1.0
C3' A:DT4001 2.6 52.3 1.0
C2' A:DT4001 3.2 52.5 1.0
C4' A:DT4002 3.8 45.7 1.0
C4' A:DT4001 4.0 53.4 1.0
C1' A:DT4001 4.1 50.4 1.0
O4' A:DT4002 4.3 46.1 1.0
O N:ARG430 4.6 28.6 1.0
O4' A:DT4001 4.6 52.5 1.0

Phosphorus binding site 2 out of 38 in 1a02

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Phosphorus binding site 2 out of 38 in the Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4003

b:43.6
occ:1.00
P A:DG4003 0.0 43.6 1.0
OP2 A:DG4003 1.5 47.4 1.0
OP1 A:DG4003 1.5 39.5 1.0
O5' A:DG4003 1.6 45.4 1.0
O3' A:DT4002 1.6 40.7 1.0
C5' A:DG4003 2.6 42.4 1.0
C3' A:DT4002 2.6 42.2 1.0
C2' A:DT4002 3.4 41.7 1.0
C4' A:DG4003 3.9 38.9 1.0
C4' A:DT4002 3.9 45.7 1.0
C3' A:DG4003 4.2 37.4 1.0
C1' A:DT4002 4.4 39.6 1.0
O N:HOH6024 4.4 70.7 1.0
C2' A:DG4003 4.5 35.3 1.0
O4' A:DG4003 4.6 35.9 1.0
O4' A:DT4002 4.7 46.1 1.0
C5' A:DT4002 4.9 51.4 1.0

Phosphorus binding site 3 out of 38 in 1a02

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Phosphorus binding site 3 out of 38 in the Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4004

b:45.9
occ:1.00
P A:DG4004 0.0 45.9 1.0
OP1 A:DG4004 1.5 43.7 1.0
OP2 A:DG4004 1.5 47.3 1.0
O5' A:DG4004 1.6 43.7 1.0
O3' A:DG4003 1.6 42.0 1.0
C5' A:DG4004 2.6 39.9 1.0
C3' A:DG4003 2.6 37.4 1.0
C2' A:DG4003 3.3 35.3 1.0
C4' A:DG4003 3.9 38.9 1.0
C4' A:DG4004 3.9 37.4 1.0
C1' A:DG4003 4.2 28.1 1.0
C3' A:DG4004 4.3 36.7 1.0
C2' A:DG4004 4.6 34.8 1.0
O4' A:DG4003 4.6 35.9 1.0
O4' A:DG4004 4.7 37.7 1.0

Phosphorus binding site 4 out of 38 in 1a02

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Phosphorus binding site 4 out of 38 in the Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4005

b:39.9
occ:1.00
P A:DA4005 0.0 39.9 1.0
OP2 A:DA4005 1.5 39.0 1.0
OP1 A:DA4005 1.5 41.7 1.0
O5' A:DA4005 1.6 35.5 1.0
O3' A:DG4004 1.6 39.5 1.0
C5' A:DA4005 2.6 34.6 1.0
C3' A:DG4004 2.7 36.7 1.0
C2' A:DG4004 3.4 34.8 1.0
C4' A:DG4004 3.9 37.4 1.0
C4' A:DA4005 3.9 40.0 1.0
C1' A:DG4004 4.2 30.5 1.0
C3' A:DA4005 4.2 41.1 1.0
C2' A:DA4005 4.5 39.0 1.0
O4' A:DG4004 4.6 37.7 1.0
O4' A:DA4005 4.7 40.5 1.0

Phosphorus binding site 5 out of 38 in 1a02

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Phosphorus binding site 5 out of 38 in the Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4006

b:47.2
occ:1.00
P A:DA4006 0.0 47.2 1.0
OP1 A:DA4006 1.5 47.6 1.0
OP2 A:DA4006 1.5 47.6 1.0
O5' A:DA4006 1.6 38.6 1.0
O3' A:DA4005 1.6 46.7 1.0
C5' A:DA4006 2.6 38.4 1.0
C3' A:DA4005 2.7 41.1 1.0
C4' A:DA4005 3.6 40.0 1.0
C2' A:DA4005 3.8 39.0 1.0
C4' A:DA4006 3.8 41.1 1.0
C8 A:DA4006 3.9 36.0 1.0
O4' A:DA4006 4.0 42.8 1.0
C2' A:DA4006 4.4 42.0 1.0
C1' A:DA4005 4.4 35.4 1.0
C3' A:DA4006 4.5 42.6 1.0
O4' A:DA4005 4.5 40.5 1.0
C1' A:DA4006 4.6 40.4 1.0
N9 A:DA4006 4.6 37.4 1.0
C5' A:DA4005 4.7 34.6 1.0
N7 A:DA4006 4.8 36.2 1.0
O5' A:DA4005 4.9 35.5 1.0

Phosphorus binding site 6 out of 38 in 1a02

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Phosphorus binding site 6 out of 38 in the Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4007

b:47.6
occ:1.00
P A:DA4007 0.0 47.6 1.0
OP1 A:DA4007 1.5 46.8 1.0
OP2 A:DA4007 1.5 47.1 1.0
O5' A:DA4007 1.6 44.1 1.0
O3' A:DA4006 1.6 44.6 1.0
C5' A:DA4007 2.6 42.2 1.0
C3' A:DA4006 2.6 42.6 1.0
C2' A:DA4006 3.2 42.0 1.0
C4' A:DA4006 3.9 41.1 1.0
C4' A:DA4007 3.9 42.2 1.0
C1' A:DA4006 4.0 40.4 1.0
C3' A:DA4007 4.2 40.5 1.0
C2' A:DA4007 4.4 39.6 1.0
O4' A:DA4006 4.5 42.8 1.0
O4' A:DA4007 4.6 41.1 1.0
C8 A:DA4007 4.9 29.8 1.0

Phosphorus binding site 7 out of 38 in 1a02

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Phosphorus binding site 7 out of 38 in the Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 7 of Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4008

b:44.2
occ:1.00
P A:DA4008 0.0 44.2 1.0
OP2 A:DA4008 1.5 39.9 1.0
OP1 A:DA4008 1.5 39.6 1.0
O5' A:DA4008 1.6 43.5 1.0
O3' A:DA4007 1.6 42.4 1.0
C5' A:DA4008 2.6 38.3 1.0
C3' A:DA4007 2.6 40.5 1.0
C2' A:DA4007 3.1 39.6 1.0
C1' A:DA4007 3.9 35.8 1.0
C4' A:DA4007 3.9 42.2 1.0
C4' A:DA4008 3.9 34.2 1.0
C3' A:DA4008 4.2 35.9 1.0
O4' A:DA4007 4.4 41.1 1.0
C2' A:DA4008 4.4 32.7 1.0
O4' A:DA4008 4.5 31.4 1.0
C8 A:DA4008 4.9 24.2 1.0
C1' A:DA4008 5.0 27.1 1.0

Phosphorus binding site 8 out of 38 in 1a02

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Phosphorus binding site 8 out of 38 in the Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 8 of Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4009

b:41.2
occ:1.00
P A:DT4009 0.0 41.2 1.0
OP2 A:DT4009 1.5 39.6 1.0
OP1 A:DT4009 1.5 42.2 1.0
O5' A:DT4009 1.6 41.3 1.0
O3' A:DA4008 1.6 40.4 1.0
C5' A:DT4009 2.5 39.8 1.0
C3' A:DA4008 2.6 35.9 1.0
C2' A:DA4008 3.3 32.7 1.0
NH2 J:ARG271 3.7 93.8 1.0
C4' A:DT4009 3.9 38.5 1.0
C4' A:DA4008 3.9 34.2 1.0
C1' A:DA4008 4.2 27.1 1.0
C3' A:DT4009 4.3 40.8 1.0
O4' A:DA4008 4.6 31.4 1.0
CZ J:ARG271 4.6 95.3 1.0
NE J:ARG271 4.7 95.9 1.0
O4' A:DT4009 4.8 36.8 1.0
C2' A:DT4009 5.0 37.1 1.0

Phosphorus binding site 9 out of 38 in 1a02

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Phosphorus binding site 9 out of 38 in the Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 9 of Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4010

b:47.3
occ:1.00
P A:DT4010 0.0 47.3 1.0
OP2 A:DT4010 1.5 47.6 1.0
OP1 A:DT4010 1.5 45.2 1.0
O5' A:DT4010 1.6 40.9 1.0
O3' A:DT4009 1.6 45.7 1.0
C5' A:DT4010 2.5 34.1 1.0
C3' A:DT4009 2.7 40.8 1.0
C2' A:DT4009 3.4 37.1 1.0
C4' A:DT4010 3.8 32.8 1.0
C4' A:DT4009 3.9 38.5 1.0
NH2 J:ARG282 4.2 89.5 1.0
C1' A:DT4009 4.3 35.1 1.0
O A:HOH6046 4.3 35.0 1.0
O4' A:DT4009 4.6 36.8 1.0
C3' A:DT4010 4.6 34.4 1.0
O4' A:DT4010 4.8 31.1 1.0

Phosphorus binding site 10 out of 38 in 1a02

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Phosphorus binding site 10 out of 38 in the Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 10 of Structure of the Dna Binding Domains of Nfat, Fos and Jun Bound to Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4011

b:35.2
occ:1.00
P A:DT4011 0.0 35.2 1.0
OP1 A:DT4011 1.5 31.4 1.0
OP2 A:DT4011 1.5 31.6 1.0
O5' A:DT4011 1.6 29.3 1.0
O3' A:DT4010 1.6 36.9 1.0
C5' A:DT4011 2.6 29.5 1.0
C3' A:DT4010 2.7 34.4 1.0
C2' A:DT4010 3.2 32.9 1.0
NH1 J:ARG282 3.6 90.8 1.0
OG J:SER279 3.6 36.6 1.0
C4' A:DT4011 3.9 32.2 1.0
C4' A:DT4010 4.0 32.8 1.0
CZ J:ARG282 4.0 89.6 1.0
NH2 J:ARG282 4.0 89.5 1.0
C1' A:DT4010 4.1 29.2 1.0
C3' A:DT4011 4.4 33.3 1.0
O4' A:DT4010 4.5 31.1 1.0
O4' A:DT4011 4.5 33.5 1.0
C2' A:DT4011 4.6 32.0 1.0
CD N:ARG537 4.6 68.5 1.0
CB J:SER279 4.7 44.5 1.0
NE N:ARG537 4.8 74.5 1.0
NE J:ARG282 4.9 86.8 1.0
C6 A:DT4011 4.9 23.1 1.0

Reference:

L.Chen, J.N.Glover, P.G.Hogan, A.Rao, S.C.Harrison. Structure of the Dna-Binding Domains From Nfat, Fos and Jun Bound Specifically to Dna. Nature V. 392 42 1998.
ISSN: ISSN 0028-0836
PubMed: 9510247
DOI: 10.1038/32100
Page generated: Fri Sep 25 11:54:17 2020

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