Phosphorus in PDB 199d: Solution Structure of the Monoalkylated Mitomycin C-Dna Complex

Phosphorus Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 16;

Binding sites:

The binding sites of Phosphorus atom in the Solution Structure of the Monoalkylated Mitomycin C-Dna Complex (pdb code 199d). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 16 binding sites of Phosphorus where determined in the Solution Structure of the Monoalkylated Mitomycin C-Dna Complex, PDB code: 199d:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Phosphorus binding site 1 out of 16 in 199d

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Phosphorus binding site 1 out of 16 in the Solution Structure of the Monoalkylated Mitomycin C-Dna Complex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Solution Structure of the Monoalkylated Mitomycin C-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P2

b:1.0
occ:1.00
P A:DC2 0.0 1.0 1.0
OP1 A:DC2 1.5 1.3 1.0
OP2 A:DC2 1.5 1.1 1.0
O5' A:DC2 1.6 0.8 1.0
O3' A:DI1 1.6 0.8 1.0
C5' A:DC2 2.6 0.7 1.0
C3' A:DI1 2.7 0.6 1.0
H5'' A:DC2 2.8 0.8 1.0
H2'' A:DI1 2.9 0.6 1.0
H3' A:DI1 3.0 0.7 1.0
H5' A:DC2 3.0 0.8 1.0
C2' A:DI1 3.3 0.6 1.0
H1' A:DI1 3.7 0.6 1.0
H3' A:DC2 3.8 0.6 1.0
H4' A:DI1 3.8 0.8 1.0
C4' A:DI1 3.9 0.6 1.0
C4' A:DC2 4.0 0.6 1.0
H2' A:DC2 4.0 0.5 1.0
C1' A:DI1 4.0 0.6 1.0
H6 A:DC2 4.1 0.5 1.0
H2' A:DI1 4.2 0.6 1.0
C3' A:DC2 4.4 0.6 1.0
O4' A:DI1 4.6 0.7 1.0
O4' A:DC2 4.6 0.5 1.0
C2' A:DC2 4.7 0.5 1.0
H4' A:DC2 4.8 0.6 1.0
H5'' A:DI1 5.0 0.7 1.0

Phosphorus binding site 2 out of 16 in 199d

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Phosphorus binding site 2 out of 16 in the Solution Structure of the Monoalkylated Mitomycin C-Dna Complex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Solution Structure of the Monoalkylated Mitomycin C-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P3

b:0.5
occ:1.00
P A:DA3 0.0 0.5 1.0
OP1 A:DA3 1.5 0.6 1.0
OP2 A:DA3 1.5 0.6 1.0
O5' A:DA3 1.6 0.4 1.0
O3' A:DC2 1.6 0.6 1.0
H4' A:DC2 2.6 0.6 1.0
C5' A:DA3 2.6 0.4 1.0
H5' A:DA3 2.8 0.4 1.0
C3' A:DC2 2.8 0.6 1.0
H1' A:DC2 2.9 0.4 1.0
H5'' A:DA3 3.0 0.5 1.0
C4' A:DC2 3.2 0.6 1.0
C1' A:DC2 3.5 0.5 1.0
C2' A:DC2 3.5 0.5 1.0
H3' A:DC2 3.6 0.6 1.0
H2'' A:DC2 3.6 0.5 1.0
O4' A:DC2 3.7 0.5 1.0
C4' A:DA3 3.9 0.3 1.0
H4' A:DA3 4.1 0.3 1.0
O4' A:DA3 4.5 0.3 1.0
H2' A:DC2 4.5 0.5 1.0
C5' A:DC2 4.6 0.7 1.0
H5'' A:DC2 4.7 0.8 1.0
N1 A:DC2 4.9 0.4 1.0
O2 A:DC2 4.9 0.4 1.0

Phosphorus binding site 3 out of 16 in 199d

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Phosphorus binding site 3 out of 16 in the Solution Structure of the Monoalkylated Mitomycin C-Dna Complex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Solution Structure of the Monoalkylated Mitomycin C-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4

b:0.4
occ:1.00
P A:DC4 0.0 0.4 1.0
OP1 A:DC4 1.5 0.4 1.0
OP2 A:DC4 1.5 0.5 1.0
O5' A:DC4 1.6 0.4 1.0
O3' A:DA3 1.6 0.4 1.0
C5' A:DC4 2.6 0.3 1.0
H4' A:DA3 2.7 0.3 1.0
C3' A:DA3 2.8 0.3 1.0
H5' A:DC4 2.9 0.4 1.0
H1' A:DA3 2.9 0.3 1.0
H5'' A:DC4 3.0 0.4 1.0
C4' A:DA3 3.2 0.3 1.0
C1' A:DA3 3.5 0.3 1.0
H3' A:DA3 3.6 0.4 1.0
C2' A:DA3 3.6 0.3 1.0
H2'' A:DA3 3.6 0.4 1.0
O4' A:DA3 3.8 0.3 1.0
C4' A:DC4 3.9 0.3 1.0
H4' A:DC4 4.2 0.3 1.0
O4' A:DC4 4.4 0.3 1.0
C5' A:DA3 4.5 0.4 1.0
H5' A:DA3 4.6 0.4 1.0
H2' A:DA3 4.6 0.4 1.0
N9 A:DA3 5.0 0.3 1.0
H3' A:DC4 5.0 0.3 1.0

Phosphorus binding site 4 out of 16 in 199d

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Phosphorus binding site 4 out of 16 in the Solution Structure of the Monoalkylated Mitomycin C-Dna Complex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Solution Structure of the Monoalkylated Mitomycin C-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P5

b:0.3
occ:1.00
P A:DG5 0.0 0.3 1.0
OP1 A:DG5 1.5 0.5 1.0
OP2 A:DG5 1.5 0.4 1.0
O5' A:DG5 1.6 0.3 1.0
O3' A:DC4 1.6 0.3 1.0
C5' A:DG5 2.6 0.3 1.0
C3' A:DC4 2.6 0.2 1.0
H3' A:DC4 2.8 0.3 1.0
H5'' A:DG5 2.9 0.4 1.0
H5' A:DG5 2.9 0.4 1.0
H2'' A:DC4 3.1 0.3 1.0
C2' A:DC4 3.4 0.3 1.0
H1' A:DC4 3.8 0.2 1.0
H2' A:DG5 3.8 0.2 1.0
H4' A:DC4 3.9 0.3 1.0
C4' A:DC4 4.0 0.3 1.0
C4' A:DG5 4.0 0.2 1.0
C1' A:DC4 4.1 0.2 1.0
H3' A:DG5 4.2 0.3 1.0
H2' A:DC4 4.2 0.3 1.0
C3' A:DG5 4.5 0.2 1.0
C2' A:DG5 4.6 0.2 1.0
O4' A:DG5 4.6 0.2 1.0
H4' A:DG5 4.6 0.3 1.0
O4' A:DC4 4.7 0.3 1.0
H8 A:DG5 4.7 0.2 1.0
H5' A:DC4 4.8 0.4 1.0
C5' A:DC4 5.0 0.3 1.0

Phosphorus binding site 5 out of 16 in 199d

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Phosphorus binding site 5 out of 16 in the Solution Structure of the Monoalkylated Mitomycin C-Dna Complex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of Solution Structure of the Monoalkylated Mitomycin C-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P6

b:0.3
occ:1.00
P A:DT6 0.0 0.3 1.0
OP1 A:DT6 1.5 0.5 1.0
OP2 A:DT6 1.5 0.6 1.0
O3' A:DG5 1.6 0.3 1.0
O5' A:DT6 1.6 0.3 1.0
C5' A:DT6 2.7 0.3 1.0
C3' A:DG5 2.7 0.2 1.0
H5'' A:DT6 2.7 0.4 1.0
H4' A:DG5 2.8 0.3 1.0
H3' A:DG5 3.1 0.3 1.0
H5' A:DT6 3.2 0.4 1.0
C4' A:DG5 3.3 0.2 1.0
H1' A:DG5 3.5 0.2 1.0
H102 A:MOC19 3.7 0.3 1.0
C4' A:DT6 3.9 0.2 1.0
C2' A:DG5 3.9 0.2 1.0
O4' A:DG5 4.0 0.2 1.0
C1' A:DG5 4.1 0.2 1.0
O4' A:DT6 4.1 0.2 1.0
H2'' A:DG5 4.1 0.3 1.0
H5'' A:DG5 4.2 0.4 1.0
H4' A:DT6 4.2 0.2 1.0
C5' A:DG5 4.4 0.3 1.0
O11 A:MOC19 4.5 0.5 1.0
C10 A:MOC19 4.6 0.2 1.0
H101 A:MOC19 4.7 0.2 1.0
H2' A:DT6 4.7 0.2 1.0
H2' A:DG5 4.8 0.2 1.0

Phosphorus binding site 6 out of 16 in 199d

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Phosphorus binding site 6 out of 16 in the Solution Structure of the Monoalkylated Mitomycin C-Dna Complex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of Solution Structure of the Monoalkylated Mitomycin C-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P7

b:0.3
occ:1.00
P A:DC7 0.0 0.3 1.0
OP2 A:DC7 1.5 0.5 1.0
OP1 A:DC7 1.5 0.5 1.0
O3' A:DT6 1.6 0.2 1.0
O5' A:DC7 1.6 0.3 1.0
C5' A:DC7 2.7 0.3 1.0
C3' A:DT6 2.7 0.2 1.0
H5'' A:DC7 2.8 0.4 1.0
H4' A:DT6 2.9 0.2 1.0
H3' A:DT6 3.0 0.3 1.0
H5' A:DC7 3.1 0.4 1.0
HN21 A:MOC19 3.2 0.3 1.0
C4' A:DT6 3.3 0.2 1.0
HN22 A:MOC19 3.5 0.4 1.0
N2 A:MOC19 3.6 0.3 1.0
H1' A:DT6 3.6 0.2 1.0
C4' A:DC7 3.9 0.3 1.0
C2' A:DT6 3.9 0.2 1.0
O4' A:DT6 4.1 0.2 1.0
C1' A:DT6 4.1 0.2 1.0
H4' A:DC7 4.2 0.3 1.0
H2'' A:DT6 4.2 0.2 1.0
O4' A:DC7 4.2 0.3 1.0
H5' A:DT6 4.4 0.4 1.0
C5' A:DT6 4.5 0.3 1.0
H6 A:DC7 4.5 0.3 1.0
H2' A:DT6 4.8 0.2 1.0

Phosphorus binding site 7 out of 16 in 199d

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Phosphorus binding site 7 out of 16 in the Solution Structure of the Monoalkylated Mitomycin C-Dna Complex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 7 of Solution Structure of the Monoalkylated Mitomycin C-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P8

b:0.4
occ:1.00
P A:DI8 0.0 0.4 1.0
OP1 A:DI8 1.5 0.5 1.0
OP2 A:DI8 1.5 0.6 1.0
O5' A:DI8 1.6 0.4 1.0
O3' A:DC7 1.6 0.4 1.0
C5' A:DI8 2.7 0.3 1.0
C3' A:DC7 2.7 0.3 1.0
H3' A:DC7 2.8 0.3 1.0
H5'' A:DI8 2.8 0.3 1.0
H5' A:DI8 3.0 0.5 1.0
H2'' A:DC7 3.0 0.3 1.0
C2' A:DC7 3.4 0.2 1.0
H3' A:DI8 4.0 0.5 1.0
C4' A:DI8 4.0 0.4 1.0
C4' A:DC7 4.0 0.3 1.0
H1' A:DC7 4.0 0.3 1.0
H4' A:DC7 4.1 0.3 1.0
H2' A:DC7 4.2 0.3 1.0
C1' A:DC7 4.2 0.2 1.0
H2' A:DI8 4.3 0.4 1.0
C3' A:DI8 4.5 0.4 1.0
O4' A:DI8 4.6 0.5 1.0
H4' A:DI8 4.7 0.5 1.0
O4' A:DC7 4.7 0.3 1.0
H5' A:DC7 4.9 0.4 1.0
C2' A:DI8 5.0 0.4 1.0

Phosphorus binding site 8 out of 16 in 199d

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Phosphorus binding site 8 out of 16 in the Solution Structure of the Monoalkylated Mitomycin C-Dna Complex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 8 of Solution Structure of the Monoalkylated Mitomycin C-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P9

b:0.5
occ:1.00
P A:DT9 0.0 0.5 1.0
OP2 A:DT9 1.5 0.7 1.0
OP1 A:DT9 1.5 0.7 1.0
O5' A:DT9 1.6 0.5 1.0
O3' A:DI8 1.6 0.5 1.0
C5' A:DT9 2.7 0.5 1.0
C3' A:DI8 2.7 0.4 1.0
H5' A:DT9 2.8 0.6 1.0
H3' A:DI8 2.8 0.5 1.0
H5'' A:DT9 3.0 0.6 1.0
H2'' A:DI8 3.1 0.5 1.0
C2' A:DI8 3.4 0.4 1.0
H3' A:DT9 3.9 0.6 1.0
H4' A:DI8 3.9 0.5 1.0
C4' A:DT9 4.0 0.6 1.0
C4' A:DI8 4.0 0.4 1.0
H1' A:DI8 4.0 0.5 1.0
H2' A:DI8 4.2 0.4 1.0
C1' A:DI8 4.3 0.4 1.0
O4' A:DT9 4.3 0.6 1.0
C3' A:DT9 4.5 0.5 1.0
O4' A:DI8 4.8 0.5 1.0
H4' A:DT9 4.8 0.6 1.0
H5'' A:DI8 4.8 0.3 1.0
H6 A:DT9 4.9 0.6 1.0
HO3' A:DT9 5.0 0.9 1.0
C5' A:DI8 5.0 0.3 1.0

Phosphorus binding site 9 out of 16 in 199d

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Phosphorus binding site 9 out of 16 in the Solution Structure of the Monoalkylated Mitomycin C-Dna Complex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 9 of Solution Structure of the Monoalkylated Mitomycin C-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P11

b:0.6
occ:1.00
P B:DC11 0.0 0.6 1.0
OP1 B:DC11 1.5 0.6 1.0
OP2 B:DC11 1.5 0.6 1.0
O5' B:DC11 1.6 0.5 1.0
O3' B:DA10 1.6 0.6 1.0
C5' B:DC11 2.7 0.4 1.0
C3' B:DA10 2.7 0.7 1.0
H5'' B:DC11 2.8 0.5 1.0
H2'' B:DA10 2.9 0.6 1.0
H5' B:DC11 3.0 0.5 1.0
H3' B:DA10 3.1 0.8 1.0
C2' B:DA10 3.3 0.7 1.0
H6 B:DC11 3.3 0.4 1.0
H4' B:DA10 3.7 0.8 1.0
H1' B:DA10 3.8 0.6 1.0
H2' B:DC11 3.8 0.4 1.0
C4' B:DA10 3.9 0.8 1.0
C4' B:DC11 4.0 0.3 1.0
H3' B:DC11 4.0 0.3 1.0
H2' B:DA10 4.1 0.7 1.0
C1' B:DA10 4.1 0.7 1.0
C6 B:DC11 4.4 0.3 1.0
C3' B:DC11 4.4 0.3 1.0
O4' B:DC11 4.5 0.3 1.0
C2' B:DC11 4.6 0.3 1.0
H5'' B:DA10 4.8 1.0 1.0
O4' B:DA10 4.8 0.8 1.0
H4' B:DC11 4.9 0.3 1.0
H5 B:DC11 4.9 0.4 1.0
C5' B:DA10 4.9 1.0 1.0

Phosphorus binding site 10 out of 16 in 199d

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Phosphorus binding site 10 out of 16 in the Solution Structure of the Monoalkylated Mitomycin C-Dna Complex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 10 of Solution Structure of the Monoalkylated Mitomycin C-Dna Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P12

b:0.3
occ:1.00
P B:DG12 0.0 0.3 1.0
OP2 B:DG12 1.5 0.4 1.0
OP1 B:DG12 1.5 0.3 1.0
O5' B:DG12 1.6 0.3 1.0
O3' B:DC11 1.6 0.3 1.0
C5' B:DG12 2.6 0.4 1.0
C3' B:DC11 2.6 0.3 1.0
H3' B:DC11 2.8 0.3 1.0
H2'' B:DC11 2.8 0.4 1.0
H5' B:DG12 2.8 0.4 1.0
H5'' B:DG12 2.9 0.5 1.0
C2' B:DC11 3.3 0.3 1.0
C4' B:DC11 4.0 0.3 1.0
C4' B:DG12 4.0 0.3 1.0
H4' B:DC11 4.0 0.3 1.0
H2' B:DC11 4.0 0.4 1.0
H1' B:DC11 4.0 0.3 1.0
C1' B:DC11 4.2 0.3 1.0
H3' B:DG12 4.2 0.4 1.0
O4' B:DG12 4.6 0.3 1.0
C3' B:DG12 4.7 0.4 1.0
H4' B:DG12 4.7 0.4 1.0
O4' B:DC11 4.7 0.3 1.0
H2' B:DG12 4.8 0.4 1.0
H5'' B:DC11 5.0 0.5 1.0

Reference:

M.Sastry, R.Fiala, R.Lipman, M.Tomasz, D.J.Patel. Solution Structure of the Monoalkylated Mitomycin C-Dna Complex. J.Mol.Biol. V. 247 338 1995.
ISSN: ISSN 0022-2836
PubMed: 7707379
DOI: 10.1006/JMBI.1994.0143
Page generated: Fri Sep 25 11:54:02 2020

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