Phosphorus in PDB 186d: Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex

Phosphorus Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 23;

Binding sites:

The binding sites of Phosphorus atom in the Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex (pdb code 186d). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 23 binding sites of Phosphorus where determined in the Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex, PDB code: 186d:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Phosphorus binding site 1 out of 23 in 186d

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Phosphorus binding site 1 out of 23 in the Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P2

b:0.6
occ:1.00
P A:DT2 0.0 0.6 1.0
OP1 A:DT2 1.5 0.8 1.0
OP2 A:DT2 1.5 0.9 1.0
O5' A:DT2 1.6 0.9 1.0
O3' A:DT1 1.6 0.5 1.0
C3' A:DT1 2.7 0.5 1.0
C5' A:DT2 2.8 0.7 1.0
H3' A:DT1 2.8 0.5 1.0
H5'' A:DT2 3.1 0.8 1.0
H6 A:DT2 3.1 0.4 1.0
H5' A:DT2 3.2 1.1 1.0
H2' A:DT2 3.4 0.5 1.0
H2'' A:DT1 3.5 0.6 1.0
C2' A:DT1 3.6 0.5 1.0
H72 A:DT2 3.7 0.6 1.0
C6 A:DT2 3.8 0.4 1.0
H4' A:DT1 3.8 0.7 1.0
C4' A:DT1 3.9 0.6 1.0
C4' A:DT2 3.9 0.6 1.0
O4' A:DT2 4.0 0.6 1.0
H1' A:DT1 4.1 0.5 1.0
C1' A:DT1 4.3 0.5 1.0
C2' A:DT2 4.3 0.5 1.0
C5 A:DT2 4.4 0.4 1.0
N1 A:DT2 4.4 0.5 1.0
C7 A:DT2 4.4 0.5 1.0
C1' A:DT2 4.5 0.5 1.0
H2' A:DT1 4.5 0.6 1.0
O4' A:DT1 4.6 0.6 1.0
H71 A:DT2 4.7 0.5 1.0
H4' A:DT2 4.7 0.6 1.0
C3' A:DT2 4.8 0.5 1.0
H5'' A:DT1 4.8 0.8 1.0
H3' A:DT2 4.9 0.6 1.0
C5' A:DT1 5.0 0.7 1.0

Phosphorus binding site 2 out of 23 in 186d

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Phosphorus binding site 2 out of 23 in the Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P3

b:0.5
occ:1.00
P A:DG3 0.0 0.5 1.0
OP1 A:DG3 1.5 0.7 1.0
OP2 A:DG3 1.5 0.7 1.0
O5' A:DG3 1.6 0.7 1.0
O3' A:DT2 1.6 0.5 1.0
H4' A:DT2 2.7 0.6 1.0
C5' A:DG3 2.7 0.7 1.0
C3' A:DT2 2.7 0.5 1.0
H5'' A:DG3 2.9 0.7 1.0
C4' A:DT2 3.1 0.6 1.0
H3' A:DT2 3.3 0.6 1.0
O4' A:DG3 3.3 0.6 1.0
H1' A:DT2 3.4 0.5 1.0
C4' A:DG3 3.4 0.6 1.0
H5' A:DG3 3.6 0.8 1.0
O4' A:DT2 3.6 0.6 1.0
H4' A:DG3 3.7 0.6 1.0
C1' A:DT2 3.9 0.5 1.0
C2' A:DT2 3.9 0.5 1.0
H2'' A:DT2 4.4 0.4 1.0
N3 A:DG3 4.4 0.4 1.0
C5' A:DT2 4.5 0.7 1.0
C1' A:DG3 4.6 0.5 1.0
H22 A:DG3 4.7 0.5 1.0
H2' A:DG3 4.7 0.6 1.0
H2' A:DT2 4.7 0.5 1.0
H5' A:DT2 4.8 1.1 1.0
H5'' A:DT2 4.8 0.8 1.0
C3' A:DG3 4.9 0.6 1.0
C4 A:DG3 5.0 0.3 1.0

Phosphorus binding site 3 out of 23 in 186d

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Phosphorus binding site 3 out of 23 in the Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4

b:0.6
occ:1.00
P A:DG4 0.0 0.6 1.0
OP1 A:DG4 1.5 0.7 1.0
OP2 A:DG4 1.5 0.8 1.0
O5' A:DG4 1.6 0.6 1.0
O3' A:DG3 1.6 0.7 1.0
H1' A:DG3 2.5 0.5 1.0
C5' A:DG4 2.7 0.5 1.0
C3' A:DG3 2.8 0.6 1.0
H5' A:DG4 2.9 0.6 1.0
H5'' A:DG4 3.0 0.6 1.0
H4' A:DG3 3.2 0.6 1.0
C1' A:DG3 3.3 0.5 1.0
H2'' A:DG3 3.4 0.5 1.0
C4' A:DG3 3.4 0.6 1.0
C2' A:DG3 3.5 0.5 1.0
H3' A:DG3 3.6 0.7 1.0
O4' A:DG3 3.7 0.6 1.0
C4' A:DG4 3.9 0.4 1.0
H4' A:DG4 4.2 0.4 1.0
O4' A:DG4 4.4 0.4 1.0
H2' A:DG3 4.5 0.6 1.0
N9 A:DG3 4.6 0.4 1.0
H8 A:DG3 4.6 0.5 1.0
C5' A:DG3 4.9 0.7 1.0

Phosphorus binding site 4 out of 23 in 186d

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Phosphorus binding site 4 out of 23 in the Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P5

b:0.5
occ:1.00
P A:DG5 0.0 0.5 1.0
OP2 A:DG5 1.5 0.8 1.0
OP1 A:DG5 1.5 0.8 1.0
O3' A:DG4 1.6 0.3 1.0
O5' A:DG5 1.6 0.5 1.0
C3' A:DG4 2.7 0.3 1.0
C5' A:DG5 2.7 0.5 1.0
H3' A:DG4 2.8 0.4 1.0
H5'' A:DG5 2.9 0.6 1.0
H5' A:DG5 3.0 0.6 1.0
H2'' A:DG4 3.1 0.5 1.0
C2' A:DG4 3.5 0.4 1.0
H2' A:DG5 3.7 0.6 1.0
H4' A:DG4 3.8 0.4 1.0
C4' A:DG4 3.9 0.4 1.0
C4' A:DG5 4.0 0.6 1.0
H1' A:DG4 4.0 0.4 1.0
H3' A:DG5 4.2 0.6 1.0
H2' A:DG4 4.3 0.5 1.0
C1' A:DG4 4.3 0.3 1.0
C3' A:DG5 4.5 0.7 1.0
C2' A:DG5 4.5 0.6 1.0
O4' A:DG5 4.6 0.5 1.0
H5' A:DG4 4.7 0.6 1.0
H8 A:DG5 4.7 0.5 1.0
O4' A:DG4 4.8 0.4 1.0
H4' A:DG5 4.8 0.7 1.0
C5' A:DG4 4.9 0.5 1.0

Phosphorus binding site 5 out of 23 in 186d

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Phosphorus binding site 5 out of 23 in the Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P6

b:0.8
occ:1.00
P A:DG6 0.0 0.8 1.0
OP1 A:DG6 1.5 1.0 1.0
OP2 A:DG6 1.5 1.0 1.0
O5' A:DG6 1.6 0.5 1.0
O3' A:DG5 1.6 0.9 1.0
H4' A:DG5 2.7 0.7 1.0
C5' A:DG6 2.7 0.5 1.0
H5'' A:DG6 2.7 0.5 1.0
C3' A:DG5 2.7 0.7 1.0
H1' A:DG5 2.9 0.6 1.0
C4' A:DG5 3.2 0.6 1.0
H5' A:DG6 3.3 0.5 1.0
H3' A:DG5 3.4 0.6 1.0
C1' A:DG5 3.6 0.6 1.0
O4' A:DG5 3.7 0.5 1.0
C2' A:DG5 3.8 0.6 1.0
C4' A:DG6 3.8 0.4 1.0
H8 A:DG6 3.8 0.6 1.0
O4' A:DG6 3.9 0.4 1.0
C8 A:DG6 4.0 0.6 1.0
H2'' A:DG5 4.0 0.8 1.0
H4' A:DG6 4.2 0.5 1.0
N7 A:DG6 4.2 0.7 1.0
N9 A:DG6 4.4 0.5 1.0
C5' A:DG5 4.5 0.5 1.0
H5'' A:DG5 4.5 0.6 1.0
H2' A:DG5 4.7 0.6 1.0
C5 A:DG6 4.8 0.6 1.0
C1' A:DG6 4.9 0.4 1.0
C4 A:DG6 5.0 0.5 1.0
N9 A:DG5 5.0 0.5 1.0

Phosphorus binding site 6 out of 23 in 186d

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Phosphorus binding site 6 out of 23 in the Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P7

b:0.5
occ:1.00
P A:DT7 0.0 0.5 1.0
OP1 A:DT7 1.5 0.8 1.0
OP2 A:DT7 1.5 0.7 1.0
O5' A:DT7 1.6 0.6 1.0
O3' A:DG6 1.6 0.5 1.0
C5' A:DT7 2.7 0.5 1.0
C3' A:DG6 2.7 0.4 1.0
H4' A:DT7 2.8 0.4 1.0
H22 A:DG5 2.9 0.8 1.0
H5'' A:DT7 2.9 0.5 1.0
H3' A:DG6 3.0 0.4 1.0
H5' A:DG6 3.3 0.5 1.0
C4' A:DT7 3.4 0.4 1.0
H4' A:DG6 3.5 0.5 1.0
C4' A:DG6 3.6 0.4 1.0
H5' A:DT7 3.6 0.6 1.0
N2 A:DG5 3.7 0.7 1.0
O3' A:DT7 3.8 0.4 1.0
C2' A:DG6 3.9 0.3 1.0
C5' A:DG6 3.9 0.5 1.0
H21 A:DG5 4.0 0.6 1.0
H2'' A:DG6 4.1 0.4 1.0
C3' A:DT7 4.2 0.5 1.0
H8 A:DG10 4.3 0.5 1.0
H2' A:DG6 4.3 0.4 1.0
H5'' A:DG6 4.4 0.5 1.0
H3' A:DT7 4.5 0.6 1.0
O4' A:DT7 4.6 0.4 1.0
N3 A:DG6 4.7 0.5 1.0
C2 A:DG5 4.8 0.6 1.0
H22 A:DG6 4.8 0.5 1.0
O4' A:DG6 4.9 0.4 1.0
C8 A:DG10 4.9 0.4 1.0
N3 A:DG5 5.0 0.6 1.0

Phosphorus binding site 7 out of 23 in 186d

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Phosphorus binding site 7 out of 23 in the Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 7 of Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P8

b:0.4
occ:1.00
P A:DT8 0.0 0.4 1.0
OP2 A:DT8 1.5 0.6 1.0
OP1 A:DT8 1.5 0.5 1.0
O5' A:DT8 1.6 0.4 1.0
O3' A:DT7 1.6 0.4 1.0
C5' A:DT8 2.7 0.4 1.0
C3' A:DT7 2.7 0.5 1.0
H5' A:DT8 2.8 0.5 1.0
H22 A:DG9 2.8 0.5 1.0
H3' A:DT7 3.0 0.6 1.0
H5'' A:DT8 3.3 0.4 1.0
C2' A:DT7 3.4 0.4 1.0
H2'' A:DT7 3.5 0.4 1.0
H2' A:DT7 3.5 0.5 1.0
N2 A:DG9 3.6 0.5 1.0
N3 A:DG9 3.8 0.5 1.0
H4' A:DT8 3.8 0.5 1.0
C4' A:DT8 3.9 0.4 1.0
H4' A:DT7 3.9 0.4 1.0
C4' A:DT7 4.0 0.4 1.0
C2 A:DG9 4.1 0.5 1.0
N7 A:DG10 4.1 0.4 1.0
C5 A:DG10 4.2 0.4 1.0
H21 A:DG5 4.3 0.6 1.0
H21 A:DG9 4.3 0.6 1.0
H2'' A:DG6 4.4 0.4 1.0
O3' A:DG6 4.4 0.5 1.0
C6 A:DG10 4.4 0.4 1.0
H1' A:DG9 4.5 0.5 1.0
C8 A:DG10 4.5 0.4 1.0
O4' A:DT8 4.5 0.4 1.0
C4 A:DG10 4.6 0.3 1.0
O5' A:DT7 4.6 0.6 1.0
H2' A:DG6 4.7 0.4 1.0
O6 A:DG10 4.7 0.5 1.0
H6 A:DT8 4.7 0.4 1.0
N2 A:DG5 4.7 0.7 1.0
H1 A:DG5 4.7 0.6 1.0
N9 A:DG10 4.8 0.4 1.0
C1' A:DT7 4.8 0.4 1.0
C5' A:DT7 4.9 0.5 1.0
C2' A:DG6 4.9 0.3 1.0
C4 A:DG9 4.9 0.5 1.0
H8 A:DG10 4.9 0.5 1.0
O4' A:DG9 5.0 0.5 1.0
H22 A:DG5 5.0 0.8 1.0

Phosphorus binding site 8 out of 23 in 186d

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Phosphorus binding site 8 out of 23 in the Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 8 of Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P9

b:0.7
occ:1.00
P A:DG9 0.0 0.7 1.0
OP1 A:DG9 1.5 0.8 1.0
OP2 A:DG9 1.5 0.9 1.0
O3' A:DT8 1.6 0.6 1.0
O5' A:DG9 1.6 0.7 1.0
C3' A:DT8 2.7 0.5 1.0
C5' A:DG9 2.7 0.7 1.0
H3' A:DT8 2.8 0.5 1.0
H5'' A:DG9 2.8 0.8 1.0
O4' A:DG9 3.4 0.5 1.0
H5' A:DG9 3.5 0.8 1.0
H2'' A:DT8 3.5 0.6 1.0
C4' A:DG9 3.6 0.6 1.0
C2' A:DT8 3.6 0.5 1.0
H4' A:DT8 3.8 0.5 1.0
C4' A:DT8 3.9 0.4 1.0
H4' A:DG9 4.0 0.6 1.0
H8 A:DG9 4.0 0.6 1.0
H1' A:DT8 4.1 0.6 1.0
C1' A:DT8 4.3 0.5 1.0
C8 A:DG9 4.4 0.6 1.0
C1' A:DG9 4.5 0.5 1.0
H2' A:DT8 4.6 0.5 1.0
O4' A:DT8 4.6 0.4 1.0
N9 A:DG9 4.6 0.5 1.0
H5' A:DT8 4.8 0.5 1.0
C3' A:DG9 4.9 0.6 1.0
H2' A:DG9 4.9 0.6 1.0
C5' A:DT8 4.9 0.4 1.0

Phosphorus binding site 9 out of 23 in 186d

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Phosphorus binding site 9 out of 23 in the Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 9 of Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P10

b:0.6
occ:1.00
P A:DG10 0.0 0.6 1.0
OP1 A:DG10 1.5 0.8 1.0
OP2 A:DG10 1.5 0.7 1.0
O5' A:DG10 1.6 0.6 1.0
O3' A:DG9 1.6 0.6 1.0
C3' A:DG9 2.6 0.6 1.0
C5' A:DG10 2.6 0.6 1.0
H3' A:DG9 2.7 0.7 1.0
H22 A:DG10 2.8 0.7 1.0
H5'' A:DG10 2.8 0.7 1.0
H5' A:DG10 3.1 0.8 1.0
H2'' A:DG9 3.1 0.6 1.0
C2' A:DG9 3.4 0.6 1.0
N2 A:DG10 3.7 0.6 1.0
C4' A:DG10 3.9 0.5 1.0
N3 A:DG10 3.9 0.4 1.0
C4' A:DG9 3.9 0.6 1.0
H1' A:DG9 3.9 0.5 1.0
H4' A:DG9 4.0 0.6 1.0
H2' A:DG9 4.1 0.6 1.0
H4' A:DG10 4.1 0.6 1.0
C2 A:DG10 4.2 0.5 1.0
O4' A:DG10 4.2 0.5 1.0
C1' A:DG9 4.2 0.5 1.0
H21 A:DG10 4.3 0.6 1.0
H2' A:DG17 4.5 0.5 1.0
O4' A:DG9 4.6 0.5 1.0
H5' A:DG9 4.8 0.8 1.0
C5' A:DG9 5.0 0.7 1.0

Phosphorus binding site 10 out of 23 in 186d

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Phosphorus binding site 10 out of 23 in the Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 10 of Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P11

b:0.6
occ:1.00
P A:DG11 0.0 0.6 1.0
OP1 A:DG11 1.5 0.8 1.0
OP2 A:DG11 1.5 0.7 1.0
O3' A:DG10 1.6 0.5 1.0
O5' A:DG11 1.6 0.5 1.0
C3' A:DG10 2.6 0.4 1.0
C5' A:DG11 2.7 0.5 1.0
H3' A:DG10 2.8 0.5 1.0
H5' A:DG11 2.9 0.6 1.0
H5'' A:DG11 3.0 0.6 1.0
H2'' A:DG10 3.2 0.5 1.0
C2' A:DG10 3.4 0.4 1.0
H1' A:DG10 3.7 0.5 1.0
H4' A:DG10 3.8 0.6 1.0
H3' A:DG11 3.8 0.5 1.0
C4' A:DG10 3.8 0.5 1.0
C4' A:DG11 4.0 0.5 1.0
C1' A:DG10 4.0 0.4 1.0
H2' A:DG10 4.3 0.5 1.0
C3' A:DG11 4.4 0.4 1.0
O4' A:DG10 4.4 0.5 1.0
O4' A:DG11 4.5 0.5 1.0
H2' A:DG11 4.5 0.5 1.0
H4' A:DG11 4.8 0.5 1.0
H5' A:DG10 5.0 0.8 1.0
C2' A:DG11 5.0 0.4 1.0

Reference:

Y.Wang, D.J.Patel. Solution Structure of the Tetrahymena Telomeric Repeat D(T2G4)4 G-Tetraplex. Structure V. 2 1141 1994.
ISSN: ISSN 0969-2126
PubMed: 7704525
DOI: 10.1016/S0969-2126(94)00117-0
Page generated: Fri Sep 25 11:47:51 2020

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