Phosphorus in PDB 185d: Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex
Phosphorus Binding Sites:
The binding sites of Phosphorus atom in the Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex
(pdb code 185d). This binding sites where shown within
5.0 Angstroms radius around Phosphorus atom.
In total 10 binding sites of Phosphorus where determined in the
Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex, PDB code: 185d:
Jump to Phosphorus binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Phosphorus binding site 1 out
of 10 in 185d
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Phosphorus Binding Sites List in 185d
Phosphorus binding site 1 out
of 10 in the Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 1 of Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:P12
b:0.0
occ:1.00
|
P
|
C:DA12
|
0.0
|
0.0
|
1.0
|
OP1
|
C:DA12
|
1.5
|
0.0
|
1.0
|
OP2
|
C:DA12
|
1.5
|
0.0
|
1.0
|
O3'
|
C:DG11
|
1.6
|
0.0
|
1.0
|
O5'
|
C:DA12
|
1.6
|
0.0
|
1.0
|
C5'
|
C:DA12
|
2.7
|
0.0
|
1.0
|
C3'
|
C:DG11
|
2.7
|
0.0
|
1.0
|
H5'
|
C:DA12
|
2.9
|
0.0
|
1.0
|
H5''
|
C:DA12
|
2.9
|
0.0
|
1.0
|
H2''
|
C:DG11
|
3.0
|
0.0
|
1.0
|
H3'
|
C:DG11
|
3.0
|
0.0
|
1.0
|
C2'
|
C:DG11
|
3.3
|
0.0
|
1.0
|
H8
|
C:DA12
|
3.7
|
0.0
|
1.0
|
H1'
|
C:DG11
|
3.8
|
0.0
|
1.0
|
H2'
|
C:DA12
|
3.8
|
0.0
|
1.0
|
H4'
|
C:DG11
|
3.9
|
0.0
|
1.0
|
C4'
|
C:DG11
|
4.0
|
0.0
|
1.0
|
C4'
|
C:DA12
|
4.0
|
0.0
|
1.0
|
C1'
|
C:DG11
|
4.2
|
0.0
|
1.0
|
H2'
|
C:DG11
|
4.2
|
0.0
|
1.0
|
H3'
|
C:DA12
|
4.2
|
0.0
|
1.0
|
O4'
|
C:DA12
|
4.5
|
0.0
|
1.0
|
C3'
|
C:DA12
|
4.6
|
0.0
|
1.0
|
C2'
|
C:DA12
|
4.7
|
0.0
|
1.0
|
C8
|
C:DA12
|
4.7
|
0.0
|
1.0
|
O4'
|
C:DG11
|
4.7
|
0.0
|
1.0
|
H4'
|
C:DA12
|
4.8
|
0.0
|
1.0
|
|
Phosphorus binding site 2 out
of 10 in 185d
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Phosphorus Binding Sites List in 185d
Phosphorus binding site 2 out
of 10 in the Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 2 of Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:P13
b:0.0
occ:1.00
|
P
|
C:DC13
|
0.0
|
0.0
|
1.0
|
OP1
|
C:DC13
|
1.5
|
0.0
|
1.0
|
OP2
|
C:DC13
|
1.5
|
0.0
|
1.0
|
O5'
|
C:DC13
|
1.6
|
0.0
|
1.0
|
O3'
|
C:DA12
|
1.6
|
0.0
|
1.0
|
C3'
|
C:DA12
|
2.7
|
0.0
|
1.0
|
C5'
|
C:DC13
|
2.7
|
0.0
|
1.0
|
H3'
|
C:DA12
|
2.8
|
0.0
|
1.0
|
H5'
|
C:DC13
|
2.8
|
0.0
|
1.0
|
H5''
|
C:DC13
|
3.1
|
0.0
|
1.0
|
H2''
|
C:DA12
|
3.3
|
0.0
|
1.0
|
C2'
|
C:DA12
|
3.5
|
0.0
|
1.0
|
H4'
|
C:DA12
|
3.9
|
0.0
|
1.0
|
C4'
|
C:DA12
|
4.0
|
0.0
|
1.0
|
C4'
|
C:DC13
|
4.0
|
0.0
|
1.0
|
H4'
|
C:DC13
|
4.1
|
0.0
|
1.0
|
H1'
|
C:DA12
|
4.2
|
0.0
|
1.0
|
H2'
|
C:DA12
|
4.3
|
0.0
|
1.0
|
C1'
|
C:DA12
|
4.4
|
0.0
|
1.0
|
HG12
|
A:MVA4
|
4.4
|
0.0
|
1.0
|
HG23
|
A:MVA4
|
4.5
|
0.0
|
1.0
|
O4'
|
C:DC13
|
4.5
|
0.0
|
1.0
|
O4'
|
C:DA12
|
4.7
|
0.0
|
1.0
|
H5''
|
C:DA12
|
4.9
|
0.0
|
1.0
|
|
Phosphorus binding site 3 out
of 10 in 185d
Go back to
Phosphorus Binding Sites List in 185d
Phosphorus binding site 3 out
of 10 in the Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 3 of Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:P14
b:0.0
occ:1.00
|
P
|
C:DG14
|
0.0
|
0.0
|
1.0
|
OP2
|
C:DG14
|
1.5
|
0.0
|
1.0
|
OP1
|
C:DG14
|
1.5
|
0.0
|
1.0
|
O3'
|
C:DC13
|
1.6
|
0.0
|
1.0
|
O5'
|
C:DG14
|
1.6
|
0.0
|
1.0
|
C3'
|
C:DC13
|
2.7
|
0.0
|
1.0
|
C5'
|
C:DG14
|
2.7
|
0.0
|
1.0
|
H3'
|
C:DC13
|
2.8
|
0.0
|
1.0
|
H5'
|
C:DG14
|
3.0
|
0.0
|
1.0
|
H4'
|
C:DG14
|
3.1
|
0.0
|
1.0
|
C4'
|
C:DG14
|
3.3
|
0.0
|
1.0
|
H5''
|
C:DG14
|
3.6
|
0.0
|
1.0
|
H2''
|
C:DC13
|
3.6
|
0.0
|
1.0
|
C2'
|
C:DC13
|
3.7
|
0.0
|
1.0
|
O4'
|
C:DG14
|
3.8
|
0.0
|
1.0
|
H5'
|
C:DC13
|
3.8
|
0.0
|
1.0
|
C4'
|
C:DC13
|
3.8
|
0.0
|
1.0
|
H4'
|
C:DC13
|
3.9
|
0.0
|
1.0
|
HB3
|
A:ALA2
|
4.0
|
0.0
|
1.0
|
H2'
|
C:DC13
|
4.1
|
0.0
|
1.0
|
C5'
|
C:DC13
|
4.3
|
0.0
|
1.0
|
HB2
|
A:ALA2
|
4.4
|
0.0
|
1.0
|
H5''
|
C:DC13
|
4.6
|
0.0
|
1.0
|
CB
|
A:ALA2
|
4.7
|
0.0
|
1.0
|
C3'
|
C:DG14
|
4.8
|
0.0
|
1.0
|
C1'
|
C:DC13
|
4.9
|
0.0
|
1.0
|
O4'
|
C:DC13
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 4 out
of 10 in 185d
Go back to
Phosphorus Binding Sites List in 185d
Phosphorus binding site 4 out
of 10 in the Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 4 of Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:P15
b:0.0
occ:1.00
|
P
|
C:DT15
|
0.0
|
0.0
|
1.0
|
OP1
|
C:DT15
|
1.5
|
0.0
|
1.0
|
OP2
|
C:DT15
|
1.5
|
0.0
|
1.0
|
O5'
|
C:DT15
|
1.6
|
0.0
|
1.0
|
O3'
|
C:DG14
|
1.6
|
0.0
|
1.0
|
C3'
|
C:DG14
|
2.7
|
0.0
|
1.0
|
C5'
|
C:DT15
|
2.7
|
0.0
|
1.0
|
H3'
|
C:DG14
|
2.7
|
0.0
|
1.0
|
H5'
|
C:DT15
|
2.9
|
0.0
|
1.0
|
H6
|
C:DT15
|
2.9
|
0.0
|
1.0
|
H5''
|
C:DT15
|
3.1
|
0.0
|
1.0
|
H71
|
C:DT15
|
3.4
|
0.0
|
1.0
|
H2''
|
C:DG14
|
3.6
|
0.0
|
1.0
|
C2'
|
C:DG14
|
3.7
|
0.0
|
1.0
|
H2'
|
C:DT15
|
3.7
|
0.0
|
1.0
|
H4'
|
C:DG14
|
3.9
|
0.0
|
1.0
|
C4'
|
C:DG14
|
3.9
|
0.0
|
1.0
|
C6
|
C:DT15
|
3.9
|
0.0
|
1.0
|
C4'
|
C:DT15
|
4.0
|
0.0
|
1.0
|
H5'
|
C:DG14
|
4.1
|
0.0
|
1.0
|
C7
|
C:DT15
|
4.2
|
0.0
|
1.0
|
H72
|
C:DT15
|
4.3
|
0.0
|
1.0
|
O4'
|
C:DT15
|
4.3
|
0.0
|
1.0
|
H2'
|
C:DG14
|
4.3
|
0.0
|
1.0
|
HA
|
A:DSN1
|
4.4
|
0.0
|
1.0
|
C5
|
C:DT15
|
4.5
|
0.0
|
1.0
|
C5'
|
C:DG14
|
4.5
|
0.0
|
1.0
|
H3'
|
C:DT15
|
4.5
|
0.0
|
1.0
|
C2'
|
C:DT15
|
4.6
|
0.0
|
1.0
|
H1'
|
C:DG14
|
4.7
|
0.0
|
1.0
|
C3'
|
C:DT15
|
4.7
|
0.0
|
1.0
|
C1'
|
C:DG14
|
4.7
|
0.0
|
1.0
|
N1
|
C:DT15
|
4.8
|
0.0
|
1.0
|
H4'
|
C:DT15
|
4.8
|
0.0
|
1.0
|
H5''
|
C:DG14
|
4.8
|
0.0
|
1.0
|
C1'
|
C:DT15
|
4.9
|
0.0
|
1.0
|
O4'
|
C:DG14
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 5 out
of 10 in 185d
Go back to
Phosphorus Binding Sites List in 185d
Phosphorus binding site 5 out
of 10 in the Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 5 of Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:P16
b:0.0
occ:1.00
|
P
|
C:DC16
|
0.0
|
0.0
|
1.0
|
OP1
|
C:DC16
|
1.5
|
0.0
|
1.0
|
OP2
|
C:DC16
|
1.5
|
0.0
|
1.0
|
O3'
|
C:DT15
|
1.6
|
0.0
|
1.0
|
O5'
|
C:DC16
|
1.6
|
0.0
|
1.0
|
C5'
|
C:DC16
|
2.7
|
0.0
|
1.0
|
C3'
|
C:DT15
|
2.7
|
0.0
|
1.0
|
H5'
|
C:DC16
|
2.8
|
0.0
|
1.0
|
H3'
|
C:DT15
|
2.9
|
0.0
|
1.0
|
H6
|
C:DC16
|
3.0
|
0.0
|
1.0
|
H2''
|
C:DT15
|
3.0
|
0.0
|
1.0
|
H5''
|
C:DC16
|
3.1
|
0.0
|
1.0
|
C2'
|
C:DT15
|
3.4
|
0.0
|
1.0
|
H2'
|
C:DC16
|
3.8
|
0.0
|
1.0
|
H1'
|
C:DT15
|
3.9
|
0.0
|
1.0
|
C4'
|
C:DC16
|
4.0
|
0.0
|
1.0
|
C4'
|
C:DT15
|
4.0
|
0.0
|
1.0
|
H4'
|
C:DT15
|
4.0
|
0.0
|
1.0
|
C6
|
C:DC16
|
4.0
|
0.0
|
1.0
|
C1'
|
C:DT15
|
4.2
|
0.0
|
1.0
|
H2'
|
C:DT15
|
4.2
|
0.0
|
1.0
|
O4'
|
C:DC16
|
4.3
|
0.0
|
1.0
|
H5
|
C:DC16
|
4.4
|
0.0
|
1.0
|
O4'
|
C:DT15
|
4.6
|
0.0
|
1.0
|
C2'
|
C:DC16
|
4.6
|
0.0
|
1.0
|
H3'
|
C:DC16
|
4.7
|
0.0
|
1.0
|
C5
|
C:DC16
|
4.7
|
0.0
|
1.0
|
C3'
|
C:DC16
|
4.7
|
0.0
|
1.0
|
H4'
|
C:DC16
|
4.8
|
0.0
|
1.0
|
C1'
|
C:DC16
|
4.9
|
0.0
|
1.0
|
N1
|
C:DC16
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 6 out
of 10 in 185d
Go back to
Phosphorus Binding Sites List in 185d
Phosphorus binding site 6 out
of 10 in the Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 6 of Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:P18
b:0.0
occ:1.00
|
P
|
D:DA18
|
0.0
|
0.0
|
1.0
|
OP1
|
D:DA18
|
1.5
|
0.0
|
1.0
|
OP2
|
D:DA18
|
1.5
|
0.0
|
1.0
|
O5'
|
D:DA18
|
1.6
|
0.0
|
1.0
|
O3'
|
D:DG17
|
1.6
|
0.0
|
1.0
|
C3'
|
D:DG17
|
2.7
|
0.0
|
1.0
|
C5'
|
D:DA18
|
2.7
|
0.0
|
1.0
|
H5''
|
D:DA18
|
2.9
|
0.0
|
1.0
|
H3'
|
D:DG17
|
2.9
|
0.0
|
1.0
|
H5'
|
D:DA18
|
3.0
|
0.0
|
1.0
|
H2''
|
D:DG17
|
3.0
|
0.0
|
1.0
|
C2'
|
D:DG17
|
3.3
|
0.0
|
1.0
|
HO5'
|
D:DG17
|
3.5
|
0.0
|
1.0
|
H2'
|
D:DG17
|
3.8
|
0.0
|
1.0
|
C4'
|
D:DA18
|
4.0
|
0.0
|
1.0
|
C4'
|
D:DG17
|
4.0
|
0.0
|
1.0
|
H4'
|
D:DG17
|
4.1
|
0.0
|
1.0
|
H8
|
D:DA18
|
4.2
|
0.0
|
1.0
|
H4'
|
D:DA18
|
4.3
|
0.0
|
1.0
|
O5'
|
D:DG17
|
4.4
|
0.0
|
1.0
|
O4'
|
D:DA18
|
4.4
|
0.0
|
1.0
|
C1'
|
D:DG17
|
4.6
|
0.0
|
1.0
|
H1'
|
D:DG17
|
4.7
|
0.0
|
1.0
|
C5'
|
D:DG17
|
4.7
|
0.0
|
1.0
|
O4'
|
D:DG17
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 7 out
of 10 in 185d
Go back to
Phosphorus Binding Sites List in 185d
Phosphorus binding site 7 out
of 10 in the Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 7 of Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:P19
b:0.0
occ:1.00
|
P
|
D:DC19
|
0.0
|
0.0
|
1.0
|
OP2
|
D:DC19
|
1.5
|
0.0
|
1.0
|
OP1
|
D:DC19
|
1.5
|
0.0
|
1.0
|
O3'
|
D:DA18
|
1.6
|
0.0
|
1.0
|
O5'
|
D:DC19
|
1.6
|
0.0
|
1.0
|
C3'
|
D:DA18
|
2.7
|
0.0
|
1.0
|
C5'
|
D:DC19
|
2.7
|
0.0
|
1.0
|
H3'
|
D:DA18
|
2.8
|
0.0
|
1.0
|
H5'
|
D:DC19
|
2.9
|
0.0
|
1.0
|
H5''
|
D:DC19
|
3.0
|
0.0
|
1.0
|
H2''
|
D:DA18
|
3.4
|
0.0
|
1.0
|
C2'
|
D:DA18
|
3.6
|
0.0
|
1.0
|
H4'
|
D:DA18
|
3.9
|
0.0
|
1.0
|
HG12
|
A:MVA8
|
3.9
|
0.0
|
1.0
|
C4'
|
D:DA18
|
3.9
|
0.0
|
1.0
|
C4'
|
D:DC19
|
4.0
|
0.0
|
1.0
|
H1'
|
D:DA18
|
4.1
|
0.0
|
1.0
|
H4'
|
D:DC19
|
4.2
|
0.0
|
1.0
|
C1'
|
D:DA18
|
4.4
|
0.0
|
1.0
|
H2'
|
D:DA18
|
4.4
|
0.0
|
1.0
|
HG22
|
A:MVA8
|
4.5
|
0.0
|
1.0
|
O4'
|
D:DC19
|
4.6
|
0.0
|
1.0
|
O4'
|
D:DA18
|
4.6
|
0.0
|
1.0
|
H5'
|
D:DA18
|
4.9
|
0.0
|
1.0
|
CG1
|
A:MVA8
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 8 out
of 10 in 185d
Go back to
Phosphorus Binding Sites List in 185d
Phosphorus binding site 8 out
of 10 in the Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 8 of Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:P20
b:0.0
occ:1.00
|
P
|
D:DG20
|
0.0
|
0.0
|
1.0
|
OP1
|
D:DG20
|
1.5
|
0.0
|
1.0
|
OP2
|
D:DG20
|
1.5
|
0.0
|
1.0
|
O3'
|
D:DC19
|
1.6
|
0.0
|
1.0
|
O5'
|
D:DG20
|
1.6
|
0.0
|
1.0
|
C3'
|
D:DC19
|
2.7
|
0.0
|
1.0
|
C5'
|
D:DG20
|
2.7
|
0.0
|
1.0
|
H3'
|
D:DC19
|
2.8
|
0.0
|
1.0
|
H5'
|
D:DG20
|
2.9
|
0.0
|
1.0
|
H4'
|
D:DG20
|
3.2
|
0.0
|
1.0
|
C4'
|
D:DG20
|
3.4
|
0.0
|
1.0
|
H2''
|
D:DC19
|
3.5
|
0.0
|
1.0
|
C2'
|
D:DC19
|
3.6
|
0.0
|
1.0
|
H5''
|
D:DG20
|
3.6
|
0.0
|
1.0
|
H2'
|
D:DC19
|
3.8
|
0.0
|
1.0
|
H5'
|
D:DC19
|
3.9
|
0.0
|
1.0
|
C4'
|
D:DC19
|
3.9
|
0.0
|
1.0
|
O4'
|
D:DG20
|
4.0
|
0.0
|
1.0
|
H4'
|
D:DC19
|
4.2
|
0.0
|
1.0
|
C5'
|
D:DC19
|
4.4
|
0.0
|
1.0
|
H5''
|
D:DC19
|
4.6
|
0.0
|
1.0
|
HB3
|
A:ALA6
|
4.8
|
0.0
|
1.0
|
C3'
|
D:DG20
|
4.9
|
0.0
|
1.0
|
OP1
|
D:DT21
|
4.9
|
0.0
|
1.0
|
C1'
|
D:DC19
|
4.9
|
0.0
|
1.0
|
O4'
|
D:DC19
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 9 out
of 10 in 185d
Go back to
Phosphorus Binding Sites List in 185d
Phosphorus binding site 9 out
of 10 in the Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 9 of Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:P21
b:0.0
occ:1.00
|
P
|
D:DT21
|
0.0
|
0.0
|
1.0
|
OP1
|
D:DT21
|
1.5
|
0.0
|
1.0
|
OP2
|
D:DT21
|
1.5
|
0.0
|
1.0
|
O3'
|
D:DG20
|
1.6
|
0.0
|
1.0
|
O5'
|
D:DT21
|
1.6
|
0.0
|
1.0
|
C3'
|
D:DG20
|
2.7
|
0.0
|
1.0
|
C5'
|
D:DT21
|
2.7
|
0.0
|
1.0
|
H5''
|
D:DT21
|
2.8
|
0.0
|
1.0
|
H4'
|
D:DG20
|
2.8
|
0.0
|
1.0
|
H3'
|
D:DG20
|
3.0
|
0.0
|
1.0
|
C4'
|
D:DG20
|
3.3
|
0.0
|
1.0
|
H5'
|
D:DT21
|
3.4
|
0.0
|
1.0
|
C4'
|
D:DT21
|
3.8
|
0.0
|
1.0
|
O4'
|
D:DT21
|
3.9
|
0.0
|
1.0
|
H5'
|
D:DG20
|
3.9
|
0.0
|
1.0
|
C2'
|
D:DG20
|
4.0
|
0.0
|
1.0
|
H1'
|
D:DG20
|
4.0
|
0.0
|
1.0
|
HB3
|
A:ALA6
|
4.1
|
0.0
|
1.0
|
HA
|
A:ALA6
|
4.1
|
0.0
|
1.0
|
H2''
|
D:DG20
|
4.1
|
0.0
|
1.0
|
H4'
|
D:DT21
|
4.2
|
0.0
|
1.0
|
C5'
|
D:DG20
|
4.2
|
0.0
|
1.0
|
O4'
|
D:DG20
|
4.3
|
0.0
|
1.0
|
C1'
|
D:DG20
|
4.4
|
0.0
|
1.0
|
O
|
A:DSN5
|
4.5
|
0.0
|
1.0
|
H6
|
D:DT21
|
4.6
|
0.0
|
1.0
|
HA
|
A:DSN5
|
4.6
|
0.0
|
1.0
|
C
|
A:DSN5
|
4.6
|
0.0
|
1.0
|
OP1
|
D:DG20
|
4.7
|
0.0
|
1.0
|
N
|
A:ALA6
|
4.7
|
0.0
|
1.0
|
H2'
|
D:DG20
|
4.8
|
0.0
|
1.0
|
CA
|
A:ALA6
|
4.8
|
0.0
|
1.0
|
CB
|
A:ALA6
|
4.9
|
0.0
|
1.0
|
H5''
|
D:DG20
|
4.9
|
0.0
|
1.0
|
|
Phosphorus binding site 10 out
of 10 in 185d
Go back to
Phosphorus Binding Sites List in 185d
Phosphorus binding site 10 out
of 10 in the Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 10 of Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3, N-MECYS7]Tandem- [D(Gatatc)]2 Complex within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:P22
b:0.0
occ:1.00
|
P
|
D:DC22
|
0.0
|
0.0
|
1.0
|
OP1
|
D:DC22
|
1.5
|
0.0
|
1.0
|
OP2
|
D:DC22
|
1.5
|
0.0
|
1.0
|
O5'
|
D:DC22
|
1.6
|
0.0
|
1.0
|
O3'
|
D:DT21
|
1.6
|
0.0
|
1.0
|
C3'
|
D:DT21
|
2.7
|
0.0
|
1.0
|
C5'
|
D:DC22
|
2.7
|
0.0
|
1.0
|
H3'
|
D:DT21
|
2.9
|
0.0
|
1.0
|
H5'
|
D:DC22
|
2.9
|
0.0
|
1.0
|
H2''
|
D:DT21
|
2.9
|
0.0
|
1.0
|
H5''
|
D:DC22
|
3.0
|
0.0
|
1.0
|
C2'
|
D:DT21
|
3.3
|
0.0
|
1.0
|
H6
|
D:DC22
|
3.4
|
0.0
|
1.0
|
C4'
|
D:DC22
|
4.0
|
0.0
|
1.0
|
H2'
|
D:DT21
|
4.0
|
0.0
|
1.0
|
C4'
|
D:DT21
|
4.0
|
0.0
|
1.0
|
H3'
|
D:DC22
|
4.0
|
0.0
|
1.0
|
H4'
|
D:DT21
|
4.1
|
0.0
|
1.0
|
H1'
|
D:DT21
|
4.2
|
0.0
|
1.0
|
C6
|
D:DC22
|
4.4
|
0.0
|
1.0
|
C1'
|
D:DT21
|
4.4
|
0.0
|
1.0
|
O4'
|
D:DC22
|
4.4
|
0.0
|
1.0
|
C3'
|
D:DC22
|
4.5
|
0.0
|
1.0
|
H5
|
D:DC22
|
4.6
|
0.0
|
1.0
|
H5'
|
D:DT21
|
4.7
|
0.0
|
1.0
|
H4'
|
D:DC22
|
4.8
|
0.0
|
1.0
|
O4'
|
D:DT21
|
4.9
|
0.0
|
1.0
|
C5
|
D:DC22
|
4.9
|
0.0
|
1.0
|
C5'
|
D:DT21
|
5.0
|
0.0
|
1.0
|
|
Reference:
K.J.Addess,
J.Feigon.
Sequence Specificity of Quinoxaline Antibiotics. 1. Solution Structure of A 1:1 Complex Between Triostin A and [D(Gacgtc)]2 and Comparison with the Solution Structure of the [N-MECYS3,N-MECYS7]Tandem-[D(Gatatc)]2 Complex. Biochemistry V. 33 12386 1994.
ISSN: ISSN 0006-2960
PubMed: 7918461
DOI: 10.1021/BI00207A005
Page generated: Fri Sep 25 11:47:19 2020
|