Phosphorus in PDB 176d: uc(Nmr) Solution Structure of A Peptide Nucleic Acid Complexed with Rna

Phosphorus Binding Sites:

The binding sites of Phosphorus atom in the uc(Nmr) Solution Structure of A Peptide Nucleic Acid Complexed with Rna (pdb code 176d). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 6 binding sites of Phosphorus where determined in the uc(Nmr) Solution Structure of A Peptide Nucleic Acid Complexed with Rna, PDB code: 176d:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6;

Phosphorus binding site 1 out of 6 in 176d

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Phosphorus binding site 1 out of 6 in the uc(Nmr) Solution Structure of A Peptide Nucleic Acid Complexed with Rna


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of uc(Nmr) Solution Structure of A Peptide Nucleic Acid Complexed with Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P7

b:0.0
occ:1.00
P B:G7 0.0 0.0 1.0
OP2 B:G7 1.5 0.0 1.0
OP1 B:G7 1.5 0.0 1.0
OP3 B:G7 1.6 0.0 1.0
O5' B:G7 1.6 0.0 1.0
HO5' B:G7 2.1 0.0 1.0
C5' B:G7 2.7 0.0 1.0
H5'' B:G7 2.9 0.0 1.0
H5' B:G7 2.9 0.0 1.0
H8 B:G7 3.3 0.0 1.0
H3' B:G7 3.9 0.0 1.0
C8 B:G7 4.0 0.0 1.0
C4' B:G7 4.0 0.0 1.0
N7 B:G7 4.4 0.0 1.0
C3' B:G7 4.5 0.0 1.0
O4' B:G7 4.6 0.0 1.0
OP2 B:A8 4.8 0.0 1.0
H4' B:G7 4.8 0.0 1.0
N9 B:G7 4.9 0.0 1.0

Phosphorus binding site 2 out of 6 in 176d

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Phosphorus binding site 2 out of 6 in the uc(Nmr) Solution Structure of A Peptide Nucleic Acid Complexed with Rna


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of uc(Nmr) Solution Structure of A Peptide Nucleic Acid Complexed with Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P8

b:0.0
occ:1.00
P B:A8 0.0 0.0 1.0
OP1 B:A8 1.5 0.0 1.0
OP2 B:A8 1.5 0.0 1.0
O5' B:A8 1.6 0.0 1.0
O3' B:G7 1.6 0.0 1.0
C5' B:A8 2.7 0.0 1.0
C3' B:G7 2.7 0.0 1.0
H3' B:G7 2.8 0.0 1.0
H5' B:A8 2.9 0.0 1.0
H5'' B:A8 3.0 0.0 1.0
H8 B:A8 3.1 0.0 1.0
C2' B:G7 3.6 0.0 1.0
H2' B:G7 3.6 0.0 1.0
C4' B:G7 3.9 0.0 1.0
H3' B:A8 3.9 0.0 1.0
C4' B:A8 3.9 0.0 1.0
H5'' B:G7 4.0 0.0 1.0
C8 B:A8 4.0 0.0 1.0
O2' B:G7 4.1 0.0 1.0
H4' B:G7 4.2 0.0 1.0
OP2 B:G9 4.2 0.0 1.0
O4' B:A8 4.3 0.0 1.0
HO2' B:G7 4.4 0.0 1.0
C5' B:G7 4.4 0.0 1.0
C3' B:A8 4.5 0.0 1.0
O5' B:G7 4.6 0.0 1.0
N7 B:A8 4.7 0.0 1.0
H4' B:A8 4.8 0.0 1.0
N9 B:A8 4.9 0.0 1.0
C1' B:G7 4.9 0.0 1.0

Phosphorus binding site 3 out of 6 in 176d

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Phosphorus binding site 3 out of 6 in the uc(Nmr) Solution Structure of A Peptide Nucleic Acid Complexed with Rna


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of uc(Nmr) Solution Structure of A Peptide Nucleic Acid Complexed with Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P9

b:0.0
occ:1.00
P B:G9 0.0 0.0 1.0
OP1 B:G9 1.5 0.0 1.0
OP2 B:G9 1.5 0.0 1.0
O3' B:A8 1.6 0.0 1.0
O5' B:G9 1.6 0.0 1.0
C5' B:G9 2.7 0.0 1.0
C3' B:A8 2.7 0.0 1.0
H5' B:G9 2.7 0.0 1.0
H3' B:A8 2.8 0.0 1.0
H5'' B:G9 3.1 0.0 1.0
H8 B:G9 3.2 0.0 1.0
H5'' B:A8 3.3 0.0 1.0
C4' B:A8 3.7 0.0 1.0
C2' B:A8 3.9 0.0 1.0
C5' B:A8 3.9 0.0 1.0
C4' B:G9 3.9 0.0 1.0
H4' B:A8 3.9 0.0 1.0
H2' B:A8 4.0 0.0 1.0
O4' B:G9 4.1 0.0 1.0
H3' B:G9 4.1 0.0 1.0
O5' B:A8 4.3 0.0 1.0
C8 B:G9 4.3 0.0 1.0
O2' B:A8 4.3 0.0 1.0
HO2' B:A8 4.5 0.0 1.0
C3' B:G9 4.6 0.0 1.0
H4' B:G9 4.7 0.0 1.0
H5' B:A8 4.9 0.0 1.0
O4' B:A8 4.9 0.0 1.0
C1' B:A8 5.0 0.0 1.0

Phosphorus binding site 4 out of 6 in 176d

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Phosphorus binding site 4 out of 6 in the uc(Nmr) Solution Structure of A Peptide Nucleic Acid Complexed with Rna


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of uc(Nmr) Solution Structure of A Peptide Nucleic Acid Complexed with Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P10

b:0.0
occ:1.00
P B:U10 0.0 0.0 1.0
OP2 B:U10 1.5 0.0 1.0
OP1 B:U10 1.5 0.0 1.0
O5' B:U10 1.6 0.0 1.0
O3' B:G9 1.6 0.0 1.0
C5' B:U10 2.7 0.0 1.0
C3' B:G9 2.7 0.0 1.0
H3' B:G9 2.8 0.0 1.0
H5' B:U10 2.9 0.0 1.0
H5'' B:U10 3.0 0.0 1.0
H2' B:G9 3.5 0.0 1.0
C2' B:G9 3.5 0.0 1.0
H6 B:U10 3.5 0.0 1.0
O2' B:G9 3.9 0.0 1.0
HO2' B:G9 3.9 0.0 1.0
C4' B:G9 4.0 0.0 1.0
C4' B:U10 4.0 0.0 1.0
H3' B:U10 4.2 0.0 1.0
H5'' B:G9 4.2 0.0 1.0
H4' B:G9 4.2 0.0 1.0
O4' B:U10 4.4 0.0 1.0
C5' B:G9 4.5 0.0 1.0
C6 B:U10 4.6 0.0 1.0
C3' B:U10 4.6 0.0 1.0
H4' B:U10 4.8 0.0 1.0
H5 B:U10 4.8 0.0 1.0
O5' B:G9 4.8 0.0 1.0
C1' B:G9 4.8 0.0 1.0

Phosphorus binding site 5 out of 6 in 176d

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Phosphorus binding site 5 out of 6 in the uc(Nmr) Solution Structure of A Peptide Nucleic Acid Complexed with Rna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of uc(Nmr) Solution Structure of A Peptide Nucleic Acid Complexed with Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P11

b:0.0
occ:1.00
P B:U11 0.0 0.0 1.0
OP1 B:U11 1.5 0.0 1.0
OP2 B:U11 1.5 0.0 1.0
O5' B:U11 1.6 0.0 1.0
O3' B:U10 1.6 0.0 1.0
C3' B:U10 2.7 0.0 1.0
C5' B:U11 2.7 0.0 1.0
H3' B:U10 2.9 0.0 1.0
H5' B:U11 2.9 0.0 1.0
H5'' B:U11 3.0 0.0 1.0
HO2' B:U10 3.3 0.0 1.0
H2' B:U10 3.3 0.0 1.0
H6 B:U11 3.4 0.0 1.0
C2' B:U10 3.4 0.0 1.0
O2' B:U10 3.8 0.0 1.0
H3' B:U11 3.9 0.0 1.0
C4' B:U10 4.0 0.0 1.0
C4' B:U11 4.0 0.0 1.0
H4' B:U10 4.2 0.0 1.0
H5'' B:U10 4.2 0.0 1.0
C6 B:U11 4.4 0.0 1.0
O4' B:U11 4.4 0.0 1.0
C3' B:U11 4.5 0.0 1.0
H5 B:U11 4.6 0.0 1.0
C5' B:U10 4.6 0.0 1.0
C1' B:U10 4.8 0.0 1.0
H4' B:U11 4.8 0.0 1.0
O5' B:U10 4.9 0.0 1.0
O4' B:U10 5.0 0.0 1.0

Phosphorus binding site 6 out of 6 in 176d

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Phosphorus binding site 6 out of 6 in the uc(Nmr) Solution Structure of A Peptide Nucleic Acid Complexed with Rna


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of uc(Nmr) Solution Structure of A Peptide Nucleic Acid Complexed with Rna within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P12

b:0.0
occ:1.00
P B:C12 0.0 0.0 1.0
OP1 B:C12 1.5 0.0 1.0
OP2 B:C12 1.5 0.0 1.0
O5' B:C12 1.6 0.0 1.0
O3' B:U11 1.6 0.0 1.0
C5' B:C12 2.6 0.0 1.0
C3' B:U11 2.7 0.0 1.0
H3' B:U11 2.8 0.0 1.0
H5' B:C12 2.9 0.0 1.0
H5'' B:C12 2.9 0.0 1.0
H2' B:U11 3.5 0.0 1.0
C2' B:U11 3.5 0.0 1.0
H6 B:C12 3.6 0.0 1.0
O2' B:U11 3.9 0.0 1.0
C4' B:U11 3.9 0.0 1.0
H5'' B:U11 4.0 0.0 1.0
C4' B:C12 4.0 0.0 1.0
H3' B:C12 4.1 0.0 1.0
H4' B:U11 4.2 0.0 1.0
C5' B:U11 4.4 0.0 1.0
O4' B:C12 4.5 0.0 1.0
C3' B:C12 4.6 0.0 1.0
C6 B:C12 4.6 0.0 1.0
HO2' B:U11 4.6 0.0 1.0
O5' B:U11 4.7 0.0 1.0
H4' B:C12 4.7 0.0 1.0
H5 B:C12 4.8 0.0 1.0
C1' B:U11 4.9 0.0 1.0

Reference:

S.C.Brown, S.A.Thomson, J.M.Veal, D.G.Davis. uc(Nmr) Solution Structure of A Peptide Nucleic Acid Complexed with Rna. Science V. 265 777 1994.
ISSN: ISSN 0036-8075
PubMed: 7519361
Page generated: Fri Sep 25 11:43:23 2020

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