Phosphorus in PDB 156d: Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg)
Phosphorus Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
22;
Binding sites:
The binding sites of Phosphorus atom in the Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg)
(pdb code 156d). This binding sites where shown within
5.0 Angstroms radius around Phosphorus atom.
In total 22 binding sites of Phosphorus where determined in the
Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg), PDB code: 156d:
Jump to Phosphorus binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Phosphorus binding site 1 out
of 22 in 156d
Go back to
Phosphorus Binding Sites List in 156d
Phosphorus binding site 1 out
of 22 in the Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg)
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 1 of Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P2
b:0.0
occ:1.00
|
P
|
A:DG2
|
0.0
|
0.0
|
1.0
|
OP1
|
A:DG2
|
1.5
|
0.0
|
1.0
|
OP2
|
A:DG2
|
1.5
|
0.0
|
1.0
|
O3'
|
A:DG1
|
1.6
|
0.0
|
1.0
|
O5'
|
A:DG2
|
1.6
|
0.0
|
1.0
|
C3'
|
A:DG1
|
2.6
|
0.0
|
1.0
|
C5'
|
A:DG2
|
2.6
|
0.0
|
1.0
|
H2''
|
A:DG1
|
2.9
|
0.0
|
1.0
|
H5''
|
A:DG2
|
2.9
|
0.0
|
1.0
|
H5'
|
A:DG2
|
2.9
|
0.0
|
1.0
|
H3'
|
A:DG1
|
2.9
|
0.0
|
1.0
|
C2'
|
A:DG1
|
3.1
|
0.0
|
1.0
|
H1'
|
A:DG1
|
3.8
|
0.0
|
1.0
|
H3'
|
A:DG2
|
3.9
|
0.0
|
1.0
|
H2'
|
A:DG1
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DG1
|
4.0
|
0.0
|
1.0
|
C4'
|
A:DG2
|
4.0
|
0.0
|
1.0
|
C1'
|
A:DG1
|
4.0
|
0.0
|
1.0
|
H4'
|
A:DG1
|
4.2
|
0.0
|
1.0
|
H2'
|
A:DG2
|
4.4
|
0.0
|
1.0
|
O4'
|
A:DG2
|
4.4
|
0.0
|
1.0
|
C3'
|
A:DG2
|
4.5
|
0.0
|
1.0
|
H8
|
A:DG2
|
4.6
|
0.0
|
1.0
|
O4'
|
A:DG1
|
4.6
|
0.0
|
1.0
|
H4'
|
A:DG2
|
4.8
|
0.0
|
1.0
|
C2'
|
A:DG2
|
4.9
|
0.0
|
1.0
|
|
Phosphorus binding site 2 out
of 22 in 156d
Go back to
Phosphorus Binding Sites List in 156d
Phosphorus binding site 2 out
of 22 in the Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg)
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 2 of Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P3
b:0.0
occ:1.00
|
P
|
A:DG3
|
0.0
|
0.0
|
1.0
|
OP1
|
A:DG3
|
1.5
|
0.0
|
1.0
|
OP2
|
A:DG3
|
1.5
|
0.0
|
1.0
|
O5'
|
A:DG3
|
1.6
|
0.0
|
1.0
|
O3'
|
A:DG2
|
1.6
|
0.0
|
1.0
|
C5'
|
A:DG3
|
2.6
|
0.0
|
1.0
|
C3'
|
A:DG2
|
2.7
|
0.0
|
1.0
|
H5'
|
A:DG3
|
2.7
|
0.0
|
1.0
|
H2''
|
A:DG2
|
2.9
|
0.0
|
1.0
|
H5''
|
A:DG3
|
2.9
|
0.0
|
1.0
|
H3'
|
A:DG2
|
2.9
|
0.0
|
1.0
|
C2'
|
A:DG2
|
3.3
|
0.0
|
1.0
|
H3'
|
A:DG3
|
3.9
|
0.0
|
1.0
|
H2'
|
A:DG2
|
4.0
|
0.0
|
1.0
|
C4'
|
A:DG3
|
4.0
|
0.0
|
1.0
|
H1'
|
A:DG2
|
4.0
|
0.0
|
1.0
|
C4'
|
A:DG2
|
4.0
|
0.0
|
1.0
|
H4'
|
A:DG2
|
4.1
|
0.0
|
1.0
|
C1'
|
A:DG2
|
4.3
|
0.0
|
1.0
|
H22
|
A:DG3
|
4.4
|
0.0
|
1.0
|
C3'
|
A:DG3
|
4.5
|
0.0
|
1.0
|
H4'
|
A:DG3
|
4.6
|
0.0
|
1.0
|
H5''
|
A:DG2
|
4.7
|
0.0
|
1.0
|
O4'
|
A:DG2
|
4.9
|
0.0
|
1.0
|
C5'
|
A:DG2
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 3 out
of 22 in 156d
Go back to
Phosphorus Binding Sites List in 156d
Phosphorus binding site 3 out
of 22 in the Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg)
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 3 of Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P4
b:0.0
occ:1.00
|
P
|
A:DG4
|
0.0
|
0.0
|
1.0
|
OP2
|
A:DG4
|
1.5
|
0.0
|
1.0
|
OP1
|
A:DG4
|
1.5
|
0.0
|
1.0
|
O5'
|
A:DG4
|
1.6
|
0.0
|
1.0
|
O3'
|
A:DG3
|
1.6
|
0.0
|
1.0
|
C5'
|
A:DG4
|
2.7
|
0.0
|
1.0
|
C3'
|
A:DG3
|
2.7
|
0.0
|
1.0
|
H5'
|
A:DG4
|
2.8
|
0.0
|
1.0
|
H2''
|
A:DG3
|
2.8
|
0.0
|
1.0
|
H3'
|
A:DG3
|
2.8
|
0.0
|
1.0
|
H5''
|
A:DG4
|
3.1
|
0.0
|
1.0
|
C2'
|
A:DG3
|
3.3
|
0.0
|
1.0
|
H4'
|
A:DG3
|
3.7
|
0.0
|
1.0
|
C4'
|
A:DG4
|
3.9
|
0.0
|
1.0
|
H1'
|
A:DG3
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DG3
|
4.0
|
0.0
|
1.0
|
H3'
|
A:DG4
|
4.0
|
0.0
|
1.0
|
H2'
|
A:DG3
|
4.1
|
0.0
|
1.0
|
C1'
|
A:DG3
|
4.2
|
0.0
|
1.0
|
O4'
|
A:DG4
|
4.3
|
0.0
|
1.0
|
H2'
|
A:DG4
|
4.3
|
0.0
|
1.0
|
C3'
|
A:DG4
|
4.5
|
0.0
|
1.0
|
H8
|
A:DG4
|
4.7
|
0.0
|
1.0
|
O4'
|
A:DG3
|
4.8
|
0.0
|
1.0
|
H4'
|
A:DG4
|
4.8
|
0.0
|
1.0
|
C2'
|
A:DG4
|
4.9
|
0.0
|
1.0
|
|
Phosphorus binding site 4 out
of 22 in 156d
Go back to
Phosphorus Binding Sites List in 156d
Phosphorus binding site 4 out
of 22 in the Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg)
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 4 of Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P5
b:0.0
occ:1.00
|
P
|
A:DT5
|
0.0
|
0.0
|
1.0
|
OP2
|
A:DT5
|
1.5
|
0.0
|
1.0
|
OP1
|
A:DT5
|
1.5
|
0.0
|
1.0
|
O5'
|
A:DT5
|
1.6
|
0.0
|
1.0
|
O3'
|
A:DG4
|
1.6
|
0.0
|
1.0
|
C3'
|
A:DG4
|
2.6
|
0.0
|
1.0
|
C5'
|
A:DT5
|
2.7
|
0.0
|
1.0
|
H5''
|
A:DT5
|
2.8
|
0.0
|
1.0
|
H3'
|
A:DG4
|
3.0
|
0.0
|
1.0
|
H2''
|
A:DG4
|
3.0
|
0.0
|
1.0
|
H5'
|
A:DT5
|
3.1
|
0.0
|
1.0
|
C2'
|
A:DG4
|
3.2
|
0.0
|
1.0
|
H4'
|
A:DG4
|
3.7
|
0.0
|
1.0
|
H1'
|
A:DG4
|
3.7
|
0.0
|
1.0
|
H3'
|
A:DT5
|
3.8
|
0.0
|
1.0
|
C4'
|
A:DG4
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DT5
|
4.0
|
0.0
|
1.0
|
H2'
|
A:DG4
|
4.0
|
0.0
|
1.0
|
C1'
|
A:DG4
|
4.2
|
0.0
|
1.0
|
O4'
|
A:DT5
|
4.4
|
0.0
|
1.0
|
H6
|
A:DT5
|
4.5
|
0.0
|
1.0
|
C3'
|
A:DT5
|
4.5
|
0.0
|
1.0
|
H2'
|
A:DT5
|
4.5
|
0.0
|
1.0
|
O4'
|
A:DG4
|
4.7
|
0.0
|
1.0
|
H5''
|
A:DG4
|
4.8
|
0.0
|
1.0
|
H4'
|
A:DT5
|
4.8
|
0.0
|
1.0
|
C5'
|
A:DG4
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 5 out
of 22 in 156d
Go back to
Phosphorus Binding Sites List in 156d
Phosphorus binding site 5 out
of 22 in the Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg)
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 5 of Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P6
b:0.0
occ:1.00
|
P
|
A:DT6
|
0.0
|
0.0
|
1.0
|
OP1
|
A:DT6
|
1.5
|
0.0
|
1.0
|
OP2
|
A:DT6
|
1.5
|
0.0
|
1.0
|
O5'
|
A:DT6
|
1.6
|
0.0
|
1.0
|
O3'
|
A:DT5
|
1.6
|
0.0
|
1.0
|
C5'
|
A:DT6
|
2.6
|
0.0
|
1.0
|
C3'
|
A:DT5
|
2.6
|
0.0
|
1.0
|
H5'
|
A:DT6
|
2.7
|
0.0
|
1.0
|
H2''
|
A:DT5
|
2.8
|
0.0
|
1.0
|
H3'
|
A:DT5
|
3.0
|
0.0
|
1.0
|
H5''
|
A:DT6
|
3.1
|
0.0
|
1.0
|
C2'
|
A:DT5
|
3.3
|
0.0
|
1.0
|
H3'
|
A:DT6
|
3.8
|
0.0
|
1.0
|
H4'
|
A:DT5
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DT6
|
3.9
|
0.0
|
1.0
|
H2'
|
A:DT5
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DT5
|
3.9
|
0.0
|
1.0
|
O4'
|
A:DT6
|
4.3
|
0.0
|
1.0
|
C3'
|
A:DT6
|
4.4
|
0.0
|
1.0
|
H5''
|
A:DT5
|
4.5
|
0.0
|
1.0
|
C1'
|
A:DT5
|
4.5
|
0.0
|
1.0
|
H73
|
A:DT7
|
4.6
|
0.0
|
1.0
|
H1'
|
A:DT5
|
4.7
|
0.0
|
1.0
|
H4'
|
A:DT6
|
4.7
|
0.0
|
1.0
|
C5'
|
A:DT5
|
4.8
|
0.0
|
1.0
|
H2'
|
A:DT6
|
4.8
|
0.0
|
1.0
|
H71
|
A:DT7
|
4.9
|
0.0
|
1.0
|
O4'
|
A:DT5
|
4.9
|
0.0
|
1.0
|
H6
|
A:DT6
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 6 out
of 22 in 156d
Go back to
Phosphorus Binding Sites List in 156d
Phosphorus binding site 6 out
of 22 in the Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg)
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 6 of Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P7
b:0.0
occ:1.00
|
P
|
A:DT7
|
0.0
|
0.0
|
1.0
|
OP2
|
A:DT7
|
1.5
|
0.0
|
1.0
|
OP1
|
A:DT7
|
1.5
|
0.0
|
1.0
|
O5'
|
A:DT7
|
1.6
|
0.0
|
1.0
|
O3'
|
A:DT6
|
1.6
|
0.0
|
1.0
|
H5'
|
A:DT7
|
2.6
|
0.0
|
1.0
|
C5'
|
A:DT7
|
2.6
|
0.0
|
1.0
|
C3'
|
A:DT6
|
2.7
|
0.0
|
1.0
|
H2''
|
A:DT6
|
2.7
|
0.0
|
1.0
|
H5''
|
A:DT7
|
3.1
|
0.0
|
1.0
|
C2'
|
A:DT6
|
3.1
|
0.0
|
1.0
|
H73
|
A:DT8
|
3.2
|
0.0
|
1.0
|
H3'
|
A:DT6
|
3.2
|
0.0
|
1.0
|
H2'
|
A:DT6
|
3.6
|
0.0
|
1.0
|
H4'
|
A:DT6
|
3.7
|
0.0
|
1.0
|
H71
|
A:DT8
|
3.7
|
0.0
|
1.0
|
H3'
|
A:DT7
|
3.8
|
0.0
|
1.0
|
H2'
|
A:DT7
|
3.9
|
0.0
|
1.0
|
C7
|
A:DT8
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DT7
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DT6
|
3.9
|
0.0
|
1.0
|
H72
|
A:DT8
|
4.2
|
0.0
|
1.0
|
H1'
|
A:DT6
|
4.2
|
0.0
|
1.0
|
C1'
|
A:DT6
|
4.2
|
0.0
|
1.0
|
O4'
|
A:DT7
|
4.3
|
0.0
|
1.0
|
H5''
|
A:DT6
|
4.3
|
0.0
|
1.0
|
C3'
|
A:DT7
|
4.4
|
0.0
|
1.0
|
C2'
|
A:DT7
|
4.6
|
0.0
|
1.0
|
H6
|
A:DT7
|
4.6
|
0.0
|
1.0
|
H4'
|
A:DT7
|
4.7
|
0.0
|
1.0
|
O4'
|
A:DT6
|
4.7
|
0.0
|
1.0
|
C5'
|
A:DT6
|
4.8
|
0.0
|
1.0
|
|
Phosphorus binding site 7 out
of 22 in 156d
Go back to
Phosphorus Binding Sites List in 156d
Phosphorus binding site 7 out
of 22 in the Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg)
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 7 of Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P8
b:0.0
occ:1.00
|
P
|
A:DT8
|
0.0
|
0.0
|
1.0
|
OP1
|
A:DT8
|
1.5
|
0.0
|
1.0
|
OP2
|
A:DT8
|
1.5
|
0.0
|
1.0
|
O5'
|
A:DT8
|
1.6
|
0.0
|
1.0
|
O3'
|
A:DT7
|
1.6
|
0.0
|
1.0
|
C5'
|
A:DT8
|
2.6
|
0.0
|
1.0
|
C3'
|
A:DT7
|
2.7
|
0.0
|
1.0
|
H5'
|
A:DT8
|
2.7
|
0.0
|
1.0
|
H3'
|
A:DT7
|
2.8
|
0.0
|
1.0
|
H5''
|
A:DT8
|
3.1
|
0.0
|
1.0
|
H6
|
A:DT8
|
3.6
|
0.0
|
1.0
|
H4'
|
A:DT7
|
3.7
|
0.0
|
1.0
|
C4'
|
A:DT7
|
3.7
|
0.0
|
1.0
|
H2''
|
A:DT7
|
3.7
|
0.0
|
1.0
|
C2'
|
A:DT7
|
3.8
|
0.0
|
1.0
|
C4'
|
A:DT8
|
3.9
|
0.0
|
1.0
|
H5''
|
A:DT7
|
4.1
|
0.0
|
1.0
|
O4'
|
A:DT8
|
4.2
|
0.0
|
1.0
|
H3'
|
A:DT8
|
4.3
|
0.0
|
1.0
|
H2'
|
A:DT8
|
4.4
|
0.0
|
1.0
|
C5'
|
A:DT7
|
4.5
|
0.0
|
1.0
|
H72
|
A:DT8
|
4.5
|
0.0
|
1.0
|
H4'
|
A:DT8
|
4.6
|
0.0
|
1.0
|
C3'
|
A:DT8
|
4.6
|
0.0
|
1.0
|
C6
|
A:DT8
|
4.6
|
0.0
|
1.0
|
H1'
|
A:DT7
|
4.6
|
0.0
|
1.0
|
H2'
|
A:DT7
|
4.7
|
0.0
|
1.0
|
C1'
|
A:DT7
|
4.7
|
0.0
|
1.0
|
O4'
|
A:DT7
|
4.8
|
0.0
|
1.0
|
H73
|
A:DT8
|
4.8
|
0.0
|
1.0
|
H8
|
A:DG9
|
4.9
|
0.0
|
1.0
|
C2'
|
A:DT8
|
4.9
|
0.0
|
1.0
|
O5'
|
A:DT7
|
4.9
|
0.0
|
1.0
|
O4'
|
A:DG9
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 8 out
of 22 in 156d
Go back to
Phosphorus Binding Sites List in 156d
Phosphorus binding site 8 out
of 22 in the Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg)
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 8 of Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P9
b:0.0
occ:1.00
|
P
|
A:DG9
|
0.0
|
0.0
|
1.0
|
OP2
|
A:DG9
|
1.5
|
0.0
|
1.0
|
OP1
|
A:DG9
|
1.5
|
0.0
|
1.0
|
O5'
|
A:DG9
|
1.6
|
0.0
|
1.0
|
O3'
|
A:DT8
|
1.6
|
0.0
|
1.0
|
H3'
|
A:DT8
|
2.6
|
0.0
|
1.0
|
C3'
|
A:DT8
|
2.6
|
0.0
|
1.0
|
C5'
|
A:DG9
|
2.7
|
0.0
|
1.0
|
H5''
|
A:DG9
|
2.9
|
0.0
|
1.0
|
H5'
|
A:DG9
|
3.1
|
0.0
|
1.0
|
H2''
|
A:DT8
|
3.6
|
0.0
|
1.0
|
C2'
|
A:DT8
|
3.6
|
0.0
|
1.0
|
H4'
|
A:DT8
|
3.8
|
0.0
|
1.0
|
C4'
|
A:DT8
|
3.8
|
0.0
|
1.0
|
C4'
|
A:DG9
|
3.9
|
0.0
|
1.0
|
H22
|
A:DG9
|
4.0
|
0.0
|
1.0
|
O4'
|
A:DG9
|
4.2
|
0.0
|
1.0
|
H4'
|
A:DG9
|
4.2
|
0.0
|
1.0
|
H5''
|
A:DT8
|
4.2
|
0.0
|
1.0
|
H2'
|
A:DT8
|
4.3
|
0.0
|
1.0
|
C5'
|
A:DT8
|
4.6
|
0.0
|
1.0
|
N3
|
A:DG9
|
4.6
|
0.0
|
1.0
|
N2
|
A:DG9
|
4.6
|
0.0
|
1.0
|
C1'
|
A:DT8
|
4.7
|
0.0
|
1.0
|
H1'
|
A:DT8
|
4.7
|
0.0
|
1.0
|
O4'
|
A:DT8
|
4.9
|
0.0
|
1.0
|
|
Phosphorus binding site 9 out
of 22 in 156d
Go back to
Phosphorus Binding Sites List in 156d
Phosphorus binding site 9 out
of 22 in the Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg)
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 9 of Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P10
b:0.0
occ:1.00
|
P
|
A:DG10
|
0.0
|
0.0
|
1.0
|
OP1
|
A:DG10
|
1.5
|
0.0
|
1.0
|
OP2
|
A:DG10
|
1.5
|
0.0
|
1.0
|
O5'
|
A:DG10
|
1.6
|
0.0
|
1.0
|
O3'
|
A:DG9
|
1.6
|
0.0
|
1.0
|
H2''
|
A:DG9
|
2.6
|
0.0
|
1.0
|
C5'
|
A:DG10
|
2.7
|
0.0
|
1.0
|
C3'
|
A:DG9
|
2.7
|
0.0
|
1.0
|
H5'
|
A:DG10
|
2.8
|
0.0
|
1.0
|
H5''
|
A:DG10
|
3.1
|
0.0
|
1.0
|
H3'
|
A:DG9
|
3.1
|
0.0
|
1.0
|
C2'
|
A:DG9
|
3.2
|
0.0
|
1.0
|
H1'
|
A:DG9
|
3.9
|
0.0
|
1.0
|
H3'
|
A:DG10
|
4.0
|
0.0
|
1.0
|
C4'
|
A:DG9
|
4.0
|
0.0
|
1.0
|
C4'
|
A:DG10
|
4.0
|
0.0
|
1.0
|
H2'
|
A:DG9
|
4.1
|
0.0
|
1.0
|
C1'
|
A:DG9
|
4.1
|
0.0
|
1.0
|
H4'
|
A:DG9
|
4.1
|
0.0
|
1.0
|
O4'
|
A:DG10
|
4.4
|
0.0
|
1.0
|
H2'
|
A:DG10
|
4.5
|
0.0
|
1.0
|
C3'
|
A:DG10
|
4.6
|
0.0
|
1.0
|
O4'
|
A:DG9
|
4.7
|
0.0
|
1.0
|
H8
|
A:DG10
|
4.9
|
0.0
|
1.0
|
H4'
|
A:DG10
|
4.9
|
0.0
|
1.0
|
|
Phosphorus binding site 10 out
of 22 in 156d
Go back to
Phosphorus Binding Sites List in 156d
Phosphorus binding site 10 out
of 22 in the Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg)
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 10 of Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P11
b:0.0
occ:1.00
|
P
|
A:DG11
|
0.0
|
0.0
|
1.0
|
OP1
|
A:DG11
|
1.5
|
0.0
|
1.0
|
OP2
|
A:DG11
|
1.5
|
0.0
|
1.0
|
O5'
|
A:DG11
|
1.6
|
0.0
|
1.0
|
O3'
|
A:DG10
|
1.6
|
0.0
|
1.0
|
C5'
|
A:DG11
|
2.6
|
0.0
|
1.0
|
C3'
|
A:DG10
|
2.7
|
0.0
|
1.0
|
H2''
|
A:DG10
|
2.9
|
0.0
|
1.0
|
H5'
|
A:DG11
|
3.0
|
0.0
|
1.0
|
H3'
|
A:DG10
|
3.0
|
0.0
|
1.0
|
H5''
|
A:DG11
|
3.1
|
0.0
|
1.0
|
C2'
|
A:DG10
|
3.3
|
0.0
|
1.0
|
H1'
|
A:DG10
|
3.9
|
0.0
|
1.0
|
H3'
|
A:DG11
|
4.0
|
0.0
|
1.0
|
C4'
|
A:DG11
|
4.0
|
0.0
|
1.0
|
C4'
|
A:DG10
|
4.1
|
0.0
|
1.0
|
H22
|
A:DG11
|
4.1
|
0.0
|
1.0
|
H2'
|
A:DG10
|
4.1
|
0.0
|
1.0
|
H4'
|
A:DG11
|
4.2
|
0.0
|
1.0
|
H4'
|
A:DG10
|
4.2
|
0.0
|
1.0
|
C1'
|
A:DG10
|
4.3
|
0.0
|
1.0
|
H5''
|
A:DG10
|
4.6
|
0.0
|
1.0
|
C3'
|
A:DG11
|
4.6
|
0.0
|
1.0
|
O4'
|
A:DG10
|
4.9
|
0.0
|
1.0
|
C5'
|
A:DG10
|
5.0
|
0.0
|
1.0
|
|
Reference:
P.Schultze,
F.W.Smith,
J.Feigon.
Refined Solution Structure of the Dimeric Quadruplex Formed From the Oxytricha Telomeric Oligonucleotide D(Ggggttttgggg). Structure V. 2 221 1994.
ISSN: ISSN 0969-2126
PubMed: 8069635
DOI: 10.1016/S0969-2126(00)00023-X
Page generated: Fri Sep 25 11:32:56 2020
|