Phosphorus in PDB 150d: Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg)

Protein crystallography data

The structure of Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg), PDB code: 150d was solved by G.A.Leonard, K.E.Mcauley-Hecht, N.J.Gibson, T.Brown, W.P.Watson, W.N.Hunter, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 7.00 / 2.25
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 24.311, 39.648, 63.050, 90.00, 90.00, 90.00
R / Rfree (%) n/a / n/a

Phosphorus Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 22;

Binding sites:

The binding sites of Phosphorus atom in the Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg) (pdb code 150d). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 22 binding sites of Phosphorus where determined in the Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg), PDB code: 150d:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Phosphorus binding site 1 out of 22 in 150d

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Phosphorus binding site 1 out of 22 in the Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg)


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P2

b:22.0
occ:1.00
P A:DG2 0.0 22.0 1.0
OP2 A:DG2 1.5 25.9 1.0
OP1 A:DG2 1.5 26.2 1.0
O5' A:DG2 1.6 20.2 1.0
O3' A:DC1 1.6 23.2 1.0
C5' A:DG2 2.6 16.2 1.0
C3' A:DC1 2.7 15.9 1.0
O A:HOH124 3.3 55.0 1.0
C2' A:DC1 3.5 10.2 1.0
C4' A:DG2 3.8 11.4 1.0
C4' A:DC1 3.9 16.9 1.0
C3' A:DG2 4.2 12.3 1.0
C2' A:DG2 4.5 15.0 1.0
O4' A:DG2 4.5 17.6 1.0
C1' A:DC1 4.5 11.5 1.0
O A:HOH138 4.7 45.9 1.0
C5' A:DC1 4.8 21.6 1.0
O4' A:DC1 4.9 15.8 1.0

Phosphorus binding site 2 out of 22 in 150d

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Phosphorus binding site 2 out of 22 in the Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg)


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P3

b:12.9
occ:1.00
P A:DC3 0.0 12.9 1.0
OP2 A:DC3 1.5 20.2 1.0
OP1 A:DC3 1.5 12.9 1.0
O3' A:DG2 1.6 20.7 1.0
O5' A:DC3 1.6 12.6 1.0
C5' A:DC3 2.6 6.4 1.0
C3' A:DG2 2.7 12.3 1.0
C2' A:DG2 3.6 15.0 1.0
O A:HOH83 3.7 28.8 1.0
C4' A:DC3 3.8 4.2 1.0
O A:HOH106 3.9 48.2 1.0
C4' A:DG2 3.9 11.4 1.0
O4' A:DC3 4.1 9.8 1.0
C1' A:DG2 4.2 6.8 1.0
C3' A:DC3 4.4 9.8 1.0
O4' A:DG2 4.6 17.6 1.0
C6 A:DC3 5.0 12.6 1.0

Phosphorus binding site 3 out of 22 in 150d

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Phosphorus binding site 3 out of 22 in the Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg)


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4

b:10.2
occ:1.00
P A:DG4 0.0 10.2 1.0
OP2 A:DG4 1.5 20.6 1.0
OP1 A:DG4 1.5 27.7 1.0
O3' A:DC3 1.6 19.4 1.0
O5' A:DG4 1.6 23.9 1.0
C5' A:DG4 2.6 13.1 1.0
C3' A:DC3 2.7 9.8 1.0
C2' A:DC3 3.4 14.4 1.0
C4' A:DG4 3.9 9.5 1.0
C8 A:DG4 3.9 6.8 1.0
C4' A:DC3 4.0 4.2 1.0
O4' A:DG4 4.1 15.4 1.0
O A:HOH105 4.2 39.0 1.0
O A:HOH135 4.4 49.6 1.0
N9 A:DG4 4.6 7.8 1.0
C2' A:DG4 4.6 12.6 1.0
C3' A:DG4 4.7 15.9 1.0
C1' A:DG4 4.7 8.6 1.0
C1' A:DC3 4.7 9.3 1.0
N7 A:DG4 4.7 12.4 1.0
C5' A:DC3 4.7 6.4 1.0
O4' A:DC3 5.0 9.8 1.0
O5' A:DC3 5.0 12.6 1.0

Phosphorus binding site 4 out of 22 in 150d

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Phosphorus binding site 4 out of 22 in the Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg)


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P5

b:13.9
occ:1.00
P A:DA5 0.0 13.9 1.0
OP2 A:DA5 1.5 19.9 1.0
OP1 A:DA5 1.5 26.1 1.0
O3' A:DG4 1.6 26.1 1.0
O5' A:DA5 1.6 24.2 1.0
C5' A:DA5 2.6 14.2 1.0
C3' A:DG4 2.7 15.9 1.0
C2' A:DG4 3.4 12.6 1.0
O A:HOH146 3.8 48.3 1.0
C4' A:DA5 3.9 12.4 1.0
O A:HOH116 3.9 44.7 1.0
C4' A:DG4 4.0 9.5 1.0
C1' A:DG4 4.2 8.6 1.0
C2' A:DA5 4.3 7.2 1.0
O4' A:DA5 4.3 18.0 1.0
C3' A:DA5 4.3 10.6 1.0
C8 A:DA5 4.5 2.8 1.0
O4' A:DG4 4.6 15.4 1.0
O A:HOH70 4.6 50.6 1.0
C1' A:DA5 4.8 2.6 1.0

Phosphorus binding site 5 out of 22 in 150d

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Phosphorus binding site 5 out of 22 in the Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg)


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P6

b:14.6
occ:1.00
P A:DA6 0.0 14.6 1.0
OP2 A:DA6 1.5 12.4 1.0
OP1 A:DA6 1.5 20.1 1.0
O5' A:DA6 1.6 10.1 1.0
O3' A:DA5 1.6 13.9 1.0
C5' A:DA6 2.6 10.9 1.0
C3' A:DA5 2.7 10.6 1.0
C2' A:DA5 3.4 7.2 1.0
C4' A:DA6 3.9 11.5 1.0
C4' A:DA5 3.9 12.4 1.0
O A:HOH56 4.0 20.0 1.0
O A:HOH71 4.0 29.1 1.0
C1' A:DA5 4.1 2.6 1.0
C3' A:DA6 4.3 13.9 1.0
O4' A:DA5 4.5 18.0 1.0
O4' A:DA6 4.6 16.9 1.0
C2' A:DA6 4.8 9.0 1.0
O A:HOH146 4.9 48.3 1.0

Phosphorus binding site 6 out of 22 in 150d

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Phosphorus binding site 6 out of 22 in the Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg)


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P7

b:8.4
occ:1.00
P A:DT7 0.0 8.4 1.0
OP2 A:DT7 1.5 9.5 1.0
OP1 A:DT7 1.5 19.8 1.0
O5' A:DT7 1.6 15.8 1.0
O3' A:DA6 1.6 11.3 1.0
C5' A:DT7 2.6 15.6 1.0
C3' A:DA6 2.7 13.9 1.0
C2' A:DA6 3.3 9.0 1.0
C4' A:DT7 3.8 19.8 1.0
C4' A:DA6 4.0 11.5 1.0
C1' A:DA6 4.1 6.1 1.0
C3' A:DT7 4.3 18.6 1.0
O4' A:DT7 4.3 14.9 1.0
O A:HOH108 4.4 36.2 1.0
O4' A:DA6 4.6 16.9 1.0

Phosphorus binding site 7 out of 22 in 150d

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Phosphorus binding site 7 out of 22 in the Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg)


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 7 of Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P8

b:19.9
occ:1.00
P A:DT8 0.0 19.9 1.0
OP2 A:DT8 1.5 29.9 1.0
OP1 A:DT8 1.5 24.4 1.0
O3' A:DT7 1.6 26.3 1.0
O5' A:DT8 1.6 28.5 1.0
C5' A:DT8 2.6 17.2 1.0
C3' A:DT7 2.7 18.6 1.0
C2' A:DT7 3.3 17.3 1.0
O A:HOH68 3.8 27.1 1.0
C4' A:DT8 3.8 12.7 1.0
O A:HOH69 3.9 31.8 1.0
C4' A:DT7 3.9 19.8 1.0
O A:HOH130 4.0 45.6 1.0
O4' A:DT8 4.2 16.8 1.0
C1' A:DT7 4.3 15.9 1.0
C3' A:DT8 4.4 16.6 1.0
C2' A:DT8 4.6 12.9 1.0
O4' A:DT7 4.7 14.9 1.0
C5' A:DT7 4.9 15.6 1.0

Phosphorus binding site 8 out of 22 in 150d

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Phosphorus binding site 8 out of 22 in the Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg)


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 8 of Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P9

b:23.2
occ:1.00
P A:EDA9 0.0 23.2 1.0
OP2 A:EDA9 1.5 17.7 1.0
OP1 A:EDA9 1.5 27.7 1.0
O3' A:DT8 1.6 26.7 1.0
O5' A:EDA9 1.6 30.6 1.0
C5' A:EDA9 2.6 22.5 1.0
C3' A:DT8 2.7 16.6 1.0
C2' A:DT8 3.6 12.9 1.0
C4' A:EDA9 3.9 18.3 1.0
C4' A:DT8 3.9 12.7 1.0
C3' A:EDA9 4.3 14.0 1.0
C1' A:DT8 4.3 11.4 1.0
O4' A:DT8 4.7 16.8 1.0
O4' A:EDA9 4.8 27.4 1.0
O A:HOH86 4.9 28.0 1.0
C5' A:DT8 4.9 17.2 1.0

Phosphorus binding site 9 out of 22 in 150d

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Phosphorus binding site 9 out of 22 in the Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg)


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 9 of Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P10

b:27.0
occ:1.00
P A:DG10 0.0 27.0 1.0
OP2 A:DG10 1.5 24.4 1.0
OP1 A:DG10 1.5 34.6 1.0
O3' A:EDA9 1.6 24.1 1.0
O5' A:DG10 1.6 31.6 1.0
C5' A:DG10 2.6 30.8 1.0
C3' A:EDA9 2.7 14.0 1.0
C2' A:EDA9 3.5 19.2 1.0
O A:HOH132 3.8 45.9 1.0
C4' A:DG10 3.8 27.9 1.0
O A:HOH55 3.9 31.9 1.0
C4' A:EDA9 4.0 18.3 1.0
C3' A:DG10 4.3 24.0 1.0
O4' A:DG10 4.3 28.6 1.0
C1' A:EDA9 4.4 15.4 1.0
C2' A:DG10 4.5 15.8 1.0
O4' A:EDA9 4.7 27.4 1.0
O5' A:EDA9 4.9 30.6 1.0
O A:HOH95 5.0 31.7 1.0

Phosphorus binding site 10 out of 22 in 150d

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Phosphorus binding site 10 out of 22 in the Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg)


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 10 of Guanine.1,N6-Ethenoadenine Base-Pairs in the Crystal Structure of D(Cgcgaatt(Eda)Gcg) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P11

b:32.2
occ:1.00
P A:DC11 0.0 32.2 1.0
OP2 A:DC11 1.5 19.8 1.0
OP1 A:DC11 1.5 46.5 1.0
O5' A:DC11 1.6 26.1 1.0
O3' A:DG10 1.6 25.0 1.0
C5' A:DC11 2.6 20.8 1.0
C3' A:DG10 2.6 24.0 1.0
C4' A:DG10 3.7 27.9 1.0
C4' A:DC11 3.7 18.0 1.0
C2' A:DG10 3.8 15.8 1.0
O4' A:DC11 3.9 20.2 1.0
C6 A:DC11 4.1 19.8 1.0
C3' A:DC11 4.1 22.3 1.0
C1' A:DG10 4.4 13.3 1.0
C2' A:DC11 4.5 25.1 1.0
C5' A:DG10 4.6 30.8 1.0
O4' A:DG10 4.6 28.6 1.0
C1' A:DC11 4.7 13.2 1.0
C5 A:DC11 4.8 17.3 1.0
N1 A:DC11 4.8 9.5 1.0

Reference:

G.A.Leonard, K.E.Mcauley-Hecht, N.J.Gibson, T.Brown, W.P.Watson, W.N.Hunter. Guanine-1,N6-Ethenoadenine Base Pairs in the Crystal Structure of D(Cgcgaatt(Epsilon Da)Gcg). Biochemistry V. 33 4755 1994.
ISSN: ISSN 0006-2960
PubMed: 8161534
DOI: 10.1021/BI00182A002
Page generated: Fri Sep 25 11:30:35 2020

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