Phosphorus in PDB 149d: Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples

Phosphorus Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 18;

Binding sites:

The binding sites of Phosphorus atom in the Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples (pdb code 149d). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 18 binding sites of Phosphorus where determined in the Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples, PDB code: 149d:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Phosphorus binding site 1 out of 18 in 149d

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Phosphorus binding site 1 out of 18 in the Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P2

b:0.0
occ:1.00
P A:DC2 0.0 0.0 1.0
OP1 A:DC2 1.5 0.0 1.0
OP2 A:DC2 1.5 0.0 1.0
O5' A:DC2 1.6 0.0 1.0
O3' A:DC1 1.6 0.0 1.0
H5' A:DC2 2.6 0.0 1.0
C5' A:DC2 2.6 0.0 1.0
C3' A:DC1 2.6 0.0 1.0
H2'' A:DC1 2.7 0.0 1.0
H3' A:DC1 2.9 0.0 1.0
C2' A:DC1 3.1 0.0 1.0
H5'' A:DC2 3.2 0.0 1.0
H6 A:DC2 3.7 0.0 1.0
H2' A:DC1 3.8 0.0 1.0
C4' A:DC2 3.8 0.0 1.0
O4' A:DC2 3.9 0.0 1.0
H1' A:DC1 3.9 0.0 1.0
C4' A:DC1 3.9 0.0 1.0
H4' A:DC1 4.0 0.0 1.0
C1' A:DC1 4.1 0.0 1.0
H4' A:DC2 4.4 0.0 1.0
O4' A:DC1 4.6 0.0 1.0
C6 A:DC2 4.6 0.0 1.0
C3' A:DC2 4.9 0.0 1.0
H3' A:DC2 5.0 0.0 1.0

Phosphorus binding site 2 out of 18 in 149d

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Phosphorus binding site 2 out of 18 in the Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P3

b:0.0
occ:1.00
P A:DT3 0.0 0.0 1.0
OP2 A:DT3 1.5 0.0 1.0
OP1 A:DT3 1.5 0.0 1.0
O3' A:DC2 1.6 0.0 1.0
O5' A:DT3 1.6 0.0 1.0
C5' A:DT3 2.6 0.0 1.0
C3' A:DC2 2.6 0.0 1.0
H5' A:DT3 2.7 0.0 1.0
H3' A:DC2 2.8 0.0 1.0
H5'' A:DT3 2.9 0.0 1.0
H2'' A:DC2 2.9 0.0 1.0
C2' A:DC2 3.3 0.0 1.0
H4' A:DC2 3.9 0.0 1.0
C4' A:DC2 3.9 0.0 1.0
C4' A:DT3 3.9 0.0 1.0
H1' A:DC2 4.1 0.0 1.0
H2' A:DC2 4.1 0.0 1.0
H3' A:DT3 4.1 0.0 1.0
O4' A:DT3 4.2 0.0 1.0
C1' A:DC2 4.3 0.0 1.0
C3' A:DT3 4.6 0.0 1.0
O4' A:DC2 4.7 0.0 1.0
H4' A:DT3 4.7 0.0 1.0
H5'' A:DC2 4.8 0.0 1.0
H6 A:DT3 4.9 0.0 1.0

Phosphorus binding site 3 out of 18 in 149d

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Phosphorus binding site 3 out of 18 in the Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4

b:0.0
occ:1.00
P A:DA4 0.0 0.0 1.0
OP1 A:DA4 1.5 0.0 1.0
OP2 A:DA4 1.5 0.0 1.0
O5' A:DA4 1.6 0.0 1.0
O3' A:DT3 1.6 0.0 1.0
C5' A:DA4 2.6 0.0 1.0
H2'' A:DT3 2.6 0.0 1.0
C3' A:DT3 2.6 0.0 1.0
H5' A:DA4 2.7 0.0 1.0
H5'' A:DA4 2.9 0.0 1.0
H3' A:DT3 2.9 0.0 1.0
C2' A:DT3 3.0 0.0 1.0
H2' A:DT3 3.6 0.0 1.0
C4' A:DA4 3.9 0.0 1.0
C4' A:DT3 3.9 0.0 1.0
H3' A:DA4 3.9 0.0 1.0
H4' A:DT3 3.9 0.0 1.0
C1' A:DT3 4.3 0.0 1.0
H1' A:DT3 4.3 0.0 1.0
O4' A:DA4 4.3 0.0 1.0
C3' A:DA4 4.5 0.0 1.0
H4' A:DA4 4.7 0.0 1.0
H5'' A:DT3 4.7 0.0 1.0
H8 A:DA4 4.7 0.0 1.0
O4' A:DT3 4.7 0.0 1.0
C5' A:DT3 4.9 0.0 1.0

Phosphorus binding site 4 out of 18 in 149d

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Phosphorus binding site 4 out of 18 in the Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P5

b:0.0
occ:1.00
P A:DT5 0.0 0.0 1.0
OP2 A:DT5 1.5 0.0 1.0
OP1 A:DT5 1.5 0.0 1.0
O5' A:DT5 1.5 0.0 1.0
O3' A:DA4 1.5 0.0 1.0
C5' A:DT5 2.5 0.0 1.0
C3' A:DA4 2.6 0.0 1.0
H5' A:DT5 2.7 0.0 1.0
H3' A:DA4 2.8 0.0 1.0
H5'' A:DT5 2.8 0.0 1.0
H2'' A:DA4 2.8 0.0 1.0
C2' A:DA4 3.2 0.0 1.0
H2' A:DA4 3.6 0.0 1.0
H3' A:DT5 3.8 0.0 1.0
H6 A:DT5 3.8 0.0 1.0
C4' A:DT5 3.9 0.0 1.0
C4' A:DA4 3.9 0.0 1.0
H4' A:DA4 4.0 0.0 1.0
O4' A:DT5 4.3 0.0 1.0
C3' A:DT5 4.4 0.0 1.0
C1' A:DA4 4.4 0.0 1.0
H1' A:DA4 4.6 0.0 1.0
H5'' A:DA4 4.6 0.0 1.0
H4' A:DT5 4.7 0.0 1.0
C5' A:DA4 4.8 0.0 1.0
O4' A:DA4 4.8 0.0 1.0
C6 A:DT5 4.8 0.0 1.0
H73 A:DT5 4.9 0.0 1.0
H2' A:DT5 5.0 0.0 1.0

Phosphorus binding site 5 out of 18 in 149d

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Phosphorus binding site 5 out of 18 in the Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P6

b:0.0
occ:1.00
P A:DT6 0.0 0.0 1.0
OP1 A:DT6 1.5 0.0 1.0
OP2 A:DT6 1.5 0.0 1.0
O5' A:DT6 1.5 0.0 1.0
O3' A:DT5 1.6 0.0 1.0
C5' A:DT6 2.6 0.0 1.0
C3' A:DT5 2.6 0.0 1.0
H5' A:DT6 2.7 0.0 1.0
H3' A:DT5 2.8 0.0 1.0
H5'' A:DT6 2.9 0.0 1.0
H2'' A:DT5 3.1 0.0 1.0
C2' A:DT5 3.3 0.0 1.0
H3' A:DT6 3.7 0.0 1.0
H2' A:DT5 3.8 0.0 1.0
C4' A:DT5 3.9 0.0 1.0
C4' A:DT6 3.9 0.0 1.0
H4' A:DT5 3.9 0.0 1.0
C3' A:DT6 4.3 0.0 1.0
O4' A:DT6 4.4 0.0 1.0
H6 A:DT6 4.5 0.0 1.0
H5'' A:DT5 4.5 0.0 1.0
C1' A:DT5 4.6 0.0 1.0
H4' A:DT6 4.7 0.0 1.0
H1' A:DT5 4.7 0.0 1.0
C5' A:DT5 4.7 0.0 1.0
O4' A:DT5 4.9 0.0 1.0

Phosphorus binding site 6 out of 18 in 149d

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Phosphorus binding site 6 out of 18 in the Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P7

b:0.0
occ:1.00
P A:DC7 0.0 0.0 1.0
OP1 A:DC7 1.5 0.0 1.0
OP2 A:DC7 1.5 0.0 1.0
O3' A:DT6 1.6 0.0 1.0
O5' A:DC7 1.6 0.0 1.0
C5' A:DC7 2.6 0.0 1.0
C3' A:DT6 2.6 0.0 1.0
H5' A:DC7 2.7 0.0 1.0
H3' A:DT6 2.8 0.0 1.0
H2'' A:DT6 2.9 0.0 1.0
H5'' A:DC7 3.0 0.0 1.0
C2' A:DT6 3.2 0.0 1.0
H2' A:DT6 3.4 0.0 1.0
C4' A:DC7 3.9 0.0 1.0
H6 A:DC7 3.9 0.0 1.0
C4' A:DT6 4.0 0.0 1.0
H4' A:DT6 4.1 0.0 1.0
H3' A:DC7 4.2 0.0 1.0
O4' A:DC7 4.2 0.0 1.0
C1' A:DT6 4.6 0.0 1.0
C3' A:DC7 4.6 0.0 1.0
H4' A:DC7 4.7 0.0 1.0
C5' A:DT6 4.8 0.0 1.0
H5'' A:DT6 4.8 0.0 1.0
O5' A:DT6 4.9 0.0 1.0
H1' A:DT6 4.9 0.0 1.0
O4' A:DT6 4.9 0.0 1.0
C6 A:DC7 4.9 0.0 1.0

Phosphorus binding site 7 out of 18 in 149d

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Phosphorus binding site 7 out of 18 in the Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 7 of Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P9

b:0.0
occ:1.00
P B:DA9 0.0 0.0 1.0
OP1 B:DA9 1.5 0.0 1.0
OP2 B:DA9 1.5 0.0 1.0
O5' B:DA9 1.6 0.0 1.0
O3' B:DG8 1.6 0.0 1.0
C5' B:DA9 2.6 0.0 1.0
C3' B:DG8 2.6 0.0 1.0
H5' B:DA9 2.7 0.0 1.0
H3' B:DG8 2.7 0.0 1.0
H2'' B:DG8 2.8 0.0 1.0
H5'' B:DA9 2.9 0.0 1.0
C2' B:DG8 3.2 0.0 1.0
H2' B:DG8 3.8 0.0 1.0
C4' B:DA9 3.9 0.0 1.0
C4' B:DG8 3.9 0.0 1.0
HO5' B:DG8 4.0 0.0 1.0
H4' B:DG8 4.1 0.0 1.0
H3' B:DA9 4.1 0.0 1.0
O4' B:DA9 4.4 0.0 1.0
C1' B:DG8 4.5 0.0 1.0
H1' B:DG8 4.6 0.0 1.0
O5' B:DG8 4.7 0.0 1.0
C3' B:DA9 4.7 0.0 1.0
H4' B:DA9 4.7 0.0 1.0
O4' B:DG8 4.8 0.0 1.0
C5' B:DG8 4.9 0.0 1.0
H8 B:DA9 4.9 0.0 1.0

Phosphorus binding site 8 out of 18 in 149d

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Phosphorus binding site 8 out of 18 in the Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 8 of Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P10

b:0.0
occ:1.00
P B:DA10 0.0 0.0 1.0
OP2 B:DA10 1.5 0.0 1.0
OP1 B:DA10 1.5 0.0 1.0
O5' B:DA10 1.6 0.0 1.0
O3' B:DA9 1.6 0.0 1.0
C5' B:DA10 2.6 0.0 1.0
C3' B:DA9 2.6 0.0 1.0
H5' B:DA10 2.7 0.0 1.0
H2'' B:DA9 2.8 0.0 1.0
H3' B:DA9 2.9 0.0 1.0
C2' B:DA9 3.2 0.0 1.0
H3' B:DA10 3.3 0.0 1.0
H5'' B:DA10 3.4 0.0 1.0
C4' B:DA10 3.5 0.0 1.0
O4' B:DA10 3.8 0.0 1.0
H4' B:DA9 3.8 0.0 1.0
H2' B:DA9 3.8 0.0 1.0
C3' B:DA10 3.9 0.0 1.0
C4' B:DA9 3.9 0.0 1.0
H1' B:DA9 4.4 0.0 1.0
C1' B:DA9 4.4 0.0 1.0
H4' B:DA10 4.5 0.0 1.0
H8 B:DA10 4.7 0.0 1.0
H2' B:DA10 4.7 0.0 1.0
C2' B:DA10 4.7 0.0 1.0
H5'' B:DA9 4.8 0.0 1.0
O4' B:DA9 4.8 0.0 1.0
C1' B:DA10 4.9 0.0 1.0
C5' B:DA9 4.9 0.0 1.0
O3' B:DA10 4.9 0.0 1.0

Phosphorus binding site 9 out of 18 in 149d

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Phosphorus binding site 9 out of 18 in the Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 9 of Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P11

b:0.0
occ:1.00
P B:DT11 0.0 0.0 1.0
OP1 B:DT11 1.5 0.0 1.0
OP2 B:DT11 1.5 0.0 1.0
O3' B:DA10 1.6 0.0 1.0
O5' B:DT11 1.6 0.0 1.0
C5' B:DT11 2.6 0.0 1.0
C3' B:DA10 2.6 0.0 1.0
H2'' B:DA10 2.6 0.0 1.0
H5' B:DT11 2.7 0.0 1.0
H5'' B:DT11 2.8 0.0 1.0
H3' B:DA10 2.9 0.0 1.0
C2' B:DA10 3.0 0.0 1.0
H2' B:DA10 3.5 0.0 1.0
H6 B:DT11 3.7 0.0 1.0
H4' B:DA10 3.9 0.0 1.0
C4' B:DA10 3.9 0.0 1.0
C4' B:DT11 3.9 0.0 1.0
O4' B:DT11 4.3 0.0 1.0
C1' B:DA10 4.4 0.0 1.0
H3' B:DT11 4.4 0.0 1.0
H1' B:DA10 4.5 0.0 1.0
H71 B:DT11 4.6 0.0 1.0
C6 B:DT11 4.7 0.0 1.0
H4' B:DT11 4.7 0.0 1.0
C3' B:DT11 4.7 0.0 1.0
H4' C:DT19 4.8 0.0 1.0
O4' B:DA10 4.8 0.0 1.0
C5' B:DA10 4.9 0.0 1.0
H72 B:DT11 5.0 0.0 1.0
O5' B:DA10 5.0 0.0 1.0
H5'' B:DA10 5.0 0.0 1.0

Phosphorus binding site 10 out of 18 in 149d

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Phosphorus binding site 10 out of 18 in the Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 10 of Solution Structure of A Pyrimidine(Dot)Purine(Dot) Pyrimidine Dna Triplex Containing T(Dot)at, C+(Dot)Gc and G(Dot)Ta Triples within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P12

b:0.0
occ:1.00
P B:DA12 0.0 0.0 1.0
OP1 B:DA12 1.5 0.0 1.0
OP2 B:DA12 1.5 0.0 1.0
O3' B:DT11 1.6 0.0 1.0
O5' B:DA12 1.6 0.0 1.0
C5' B:DA12 2.6 0.0 1.0
C3' B:DT11 2.6 0.0 1.0
H5' B:DA12 2.7 0.0 1.0
H2'' B:DT11 2.7 0.0 1.0
H3' B:DT11 2.8 0.0 1.0
H5'' B:DA12 2.9 0.0 1.0
C2' B:DT11 3.1 0.0 1.0
H2' B:DT11 3.8 0.0 1.0
C4' B:DT11 3.9 0.0 1.0
C4' B:DA12 3.9 0.0 1.0
H4' B:DT11 3.9 0.0 1.0
H3' B:DA12 4.2 0.0 1.0
H1' B:DT11 4.2 0.0 1.0
C1' B:DT11 4.2 0.0 1.0
O4' B:DA12 4.4 0.0 1.0
H4' B:DA12 4.5 0.0 1.0
C3' B:DA12 4.7 0.0 1.0
O4' B:DT11 4.7 0.0 1.0
H4' C:DC20 4.8 0.0 1.0
H8 B:DA12 4.9 0.0 1.0
H5'' B:DT11 5.0 0.0 1.0

Reference:

I.Radhakrishnan, D.J.Patel. Solution Structure of A Pyrimidine.Purine.Pyrimidine Dna Triplex Containing T.at, C+.Gc and G.Ta Triples. Structure V. 2 17 1994.
ISSN: ISSN 0969-2126
PubMed: 8075980
DOI: 10.1016/S0969-2126(00)00005-8
Page generated: Fri Sep 25 11:30:35 2020

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