Phosphorus in PDB 146d: Solution Structure of the Mithramycin Dimer-Dna Complex
Phosphorus Binding Sites:
The binding sites of Phosphorus atom in the Solution Structure of the Mithramycin Dimer-Dna Complex
(pdb code 146d). This binding sites where shown within
5.0 Angstroms radius around Phosphorus atom.
In total 10 binding sites of Phosphorus where determined in the
Solution Structure of the Mithramycin Dimer-Dna Complex, PDB code: 146d:
Jump to Phosphorus binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Phosphorus binding site 1 out
of 10 in 146d
Go back to
Phosphorus Binding Sites List in 146d
Phosphorus binding site 1 out
of 10 in the Solution Structure of the Mithramycin Dimer-Dna Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Phosphorus with other atoms in the P binding
site number 1 of Solution Structure of the Mithramycin Dimer-Dna Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P2
b:0.2
occ:1.00
|
P
|
A:DC2
|
0.0
|
0.2
|
1.0
|
|
OP1
|
A:DC2
|
1.5
|
0.3
|
1.0
|
|
OP2
|
A:DC2
|
1.5
|
0.3
|
1.0
|
|
O5'
|
A:DC2
|
1.6
|
0.2
|
1.0
|
|
O3'
|
A:DT1
|
1.6
|
0.2
|
1.0
|
|
C3'
|
A:DT1
|
2.7
|
0.2
|
1.0
|
|
C5'
|
A:DC2
|
2.7
|
0.2
|
1.0
|
|
H3'
|
A:DT1
|
2.8
|
0.2
|
1.0
|
|
H5'
|
A:DC2
|
2.8
|
0.2
|
1.0
|
|
H5''
|
A:DC2
|
3.1
|
0.3
|
1.0
|
|
H6
|
A:DC2
|
3.2
|
0.3
|
1.0
|
|
H2'
|
A:DT1
|
3.3
|
0.3
|
1.0
|
|
C2'
|
A:DT1
|
3.4
|
0.2
|
1.0
|
|
H2''
|
A:DT1
|
3.7
|
0.3
|
1.0
|
|
C4'
|
A:DC2
|
4.0
|
0.2
|
1.0
|
|
C4'
|
A:DT1
|
4.0
|
0.2
|
1.0
|
|
H3'
|
A:DC2
|
4.0
|
0.2
|
1.0
|
|
H5''
|
A:DT1
|
4.2
|
0.3
|
1.0
|
|
O4'
|
A:DC2
|
4.2
|
0.2
|
1.0
|
|
H4'
|
A:DT1
|
4.3
|
0.2
|
1.0
|
|
C6
|
A:DC2
|
4.3
|
0.2
|
1.0
|
|
H5
|
A:DC2
|
4.5
|
0.4
|
1.0
|
|
C5'
|
A:DT1
|
4.6
|
0.2
|
1.0
|
|
C3'
|
A:DC2
|
4.6
|
0.2
|
1.0
|
|
C1'
|
A:DT1
|
4.8
|
0.3
|
1.0
|
|
H4'
|
A:DC2
|
4.8
|
0.3
|
1.0
|
|
O5'
|
A:DT1
|
4.9
|
0.3
|
1.0
|
|
C5
|
A:DC2
|
4.9
|
0.3
|
1.0
|
|
Phosphorus binding site 2 out
of 10 in 146d
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Phosphorus Binding Sites List in 146d
Phosphorus binding site 2 out
of 10 in the Solution Structure of the Mithramycin Dimer-Dna Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Phosphorus with other atoms in the P binding
site number 2 of Solution Structure of the Mithramycin Dimer-Dna Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P3
b:0.3
occ:1.00
|
P
|
A:DG3
|
0.0
|
0.3
|
1.0
|
|
OP1
|
A:DG3
|
1.5
|
0.4
|
1.0
|
|
OP2
|
A:DG3
|
1.5
|
0.4
|
1.0
|
|
O5'
|
A:DG3
|
1.6
|
0.3
|
1.0
|
|
O3'
|
A:DC2
|
1.6
|
0.3
|
1.0
|
|
C5'
|
A:DG3
|
2.7
|
0.2
|
1.0
|
|
C3'
|
A:DC2
|
2.7
|
0.2
|
1.0
|
|
H3'
|
A:DC2
|
2.9
|
0.2
|
1.0
|
|
H5'
|
A:DG3
|
2.9
|
0.2
|
1.0
|
|
H5''
|
A:DG3
|
3.0
|
0.3
|
1.0
|
|
H8
|
A:DG3
|
3.1
|
0.2
|
1.0
|
|
H2'
|
A:DC2
|
3.3
|
0.2
|
1.0
|
|
C2'
|
A:DC2
|
3.4
|
0.2
|
1.0
|
|
H2'
|
A:DG3
|
3.5
|
0.2
|
1.0
|
|
H2''
|
A:DC2
|
3.8
|
0.2
|
1.0
|
|
C4'
|
A:DC2
|
4.0
|
0.2
|
1.0
|
|
C4'
|
A:DG3
|
4.0
|
0.2
|
1.0
|
|
H5''
|
A:DC2
|
4.1
|
0.3
|
1.0
|
|
C8
|
A:DG3
|
4.1
|
0.2
|
1.0
|
|
H4'
|
A:DC2
|
4.1
|
0.3
|
1.0
|
|
O4'
|
A:DG3
|
4.3
|
0.2
|
1.0
|
|
C2'
|
A:DG3
|
4.4
|
0.2
|
1.0
|
|
H3'
|
A:DG3
|
4.4
|
0.2
|
1.0
|
|
C5'
|
A:DC2
|
4.5
|
0.2
|
1.0
|
|
C3'
|
A:DG3
|
4.6
|
0.2
|
1.0
|
|
C1'
|
A:DC2
|
4.8
|
0.2
|
1.0
|
|
H4'
|
A:DG3
|
4.8
|
0.2
|
1.0
|
|
C1'
|
A:DG3
|
4.8
|
0.2
|
1.0
|
|
HO3
|
A:DDA7
|
4.8
|
0.5
|
1.0
|
|
N9
|
A:DG3
|
4.8
|
0.2
|
1.0
|
|
O5'
|
A:DC2
|
4.9
|
0.2
|
1.0
|
|
Phosphorus binding site 3 out
of 10 in 146d
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Phosphorus Binding Sites List in 146d
Phosphorus binding site 3 out
of 10 in the Solution Structure of the Mithramycin Dimer-Dna Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Phosphorus with other atoms in the P binding
site number 3 of Solution Structure of the Mithramycin Dimer-Dna Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P4
b:0.2
occ:1.00
|
P
|
A:DC4
|
0.0
|
0.2
|
1.0
|
|
OP1
|
A:DC4
|
1.5
|
0.2
|
1.0
|
|
OP2
|
A:DC4
|
1.5
|
0.2
|
1.0
|
|
O5'
|
A:DC4
|
1.6
|
0.2
|
1.0
|
|
O3'
|
A:DG3
|
1.6
|
0.2
|
1.0
|
|
C5'
|
A:DC4
|
2.6
|
0.2
|
1.0
|
|
C3'
|
A:DG3
|
2.7
|
0.2
|
1.0
|
|
H5'
|
A:DC4
|
2.8
|
0.3
|
1.0
|
|
H3'
|
A:DG3
|
2.8
|
0.2
|
1.0
|
|
H5''
|
A:DC4
|
3.0
|
0.2
|
1.0
|
|
H2''
|
A:DG3
|
3.0
|
0.2
|
1.0
|
|
H3
|
A:DDA7
|
3.2
|
0.3
|
1.0
|
|
C2'
|
A:DG3
|
3.3
|
0.2
|
1.0
|
|
H5
|
A:DDA7
|
3.4
|
0.5
|
1.0
|
|
HO4
|
A:DDA7
|
3.5
|
0.8
|
1.0
|
|
H1
|
A:DDA7
|
3.6
|
0.4
|
1.0
|
|
H1'
|
A:DG3
|
3.7
|
0.2
|
1.0
|
|
H6
|
A:DC4
|
3.9
|
0.3
|
1.0
|
|
C4'
|
A:DC4
|
4.0
|
0.2
|
1.0
|
|
C4'
|
A:DG3
|
4.0
|
0.2
|
1.0
|
|
H4'
|
A:DG3
|
4.1
|
0.2
|
1.0
|
|
H3'
|
A:DC4
|
4.1
|
0.2
|
1.0
|
|
C1'
|
A:DG3
|
4.1
|
0.2
|
1.0
|
|
H22
|
A:DDA8
|
4.1
|
0.4
|
1.0
|
|
C3
|
A:DDA7
|
4.2
|
0.3
|
1.0
|
|
H2'
|
A:DG3
|
4.2
|
0.2
|
1.0
|
|
O4
|
A:DDA7
|
4.4
|
0.7
|
1.0
|
|
O4'
|
A:DC4
|
4.4
|
0.2
|
1.0
|
|
C5
|
A:DDA7
|
4.4
|
0.4
|
1.0
|
|
C3'
|
A:DC4
|
4.5
|
0.2
|
1.0
|
|
C4
|
A:DDA7
|
4.6
|
0.4
|
1.0
|
|
C1
|
A:DDA7
|
4.6
|
0.4
|
1.0
|
|
O4'
|
A:DG3
|
4.6
|
0.2
|
1.0
|
|
H152
|
A:CRH9
|
4.7
|
0.3
|
1.0
|
|
HO3
|
A:DDA7
|
4.8
|
0.5
|
1.0
|
|
H4'
|
A:DC4
|
4.8
|
0.2
|
1.0
|
|
C2
|
A:DDA7
|
4.9
|
0.4
|
1.0
|
|
H22
|
A:DDA7
|
4.9
|
0.4
|
1.0
|
|
C6
|
A:DC4
|
5.0
|
0.2
|
1.0
|
|
Phosphorus binding site 4 out
of 10 in 146d
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Phosphorus Binding Sites List in 146d
Phosphorus binding site 4 out
of 10 in the Solution Structure of the Mithramycin Dimer-Dna Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Phosphorus with other atoms in the P binding
site number 4 of Solution Structure of the Mithramycin Dimer-Dna Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P5
b:0.2
occ:1.00
|
P
|
A:DG5
|
0.0
|
0.2
|
1.0
|
|
OP1
|
A:DG5
|
1.5
|
0.2
|
1.0
|
|
OP2
|
A:DG5
|
1.5
|
0.2
|
1.0
|
|
O5'
|
A:DG5
|
1.6
|
0.2
|
1.0
|
|
O3'
|
A:DC4
|
1.6
|
0.2
|
1.0
|
|
C5'
|
A:DG5
|
2.7
|
0.2
|
1.0
|
|
C3'
|
A:DC4
|
2.7
|
0.2
|
1.0
|
|
H3'
|
A:DC4
|
2.9
|
0.2
|
1.0
|
|
H5'
|
A:DG5
|
2.9
|
0.2
|
1.0
|
|
H5''
|
A:DG5
|
2.9
|
0.2
|
1.0
|
|
H2'
|
A:DC4
|
3.3
|
0.2
|
1.0
|
|
C2'
|
A:DC4
|
3.4
|
0.2
|
1.0
|
|
H2''
|
A:DC4
|
3.5
|
0.2
|
1.0
|
|
H2'
|
A:DG5
|
3.6
|
0.2
|
1.0
|
|
H8
|
A:DG5
|
3.6
|
0.2
|
1.0
|
|
C4'
|
A:DC4
|
4.0
|
0.2
|
1.0
|
|
C4'
|
A:DG5
|
4.0
|
0.2
|
1.0
|
|
H4'
|
A:DC4
|
4.1
|
0.2
|
1.0
|
|
H3'
|
A:DG5
|
4.1
|
0.2
|
1.0
|
|
H5''
|
A:DC4
|
4.2
|
0.2
|
1.0
|
|
H4'
|
A:CRH9
|
4.2
|
0.6
|
1.0
|
|
H4'1
|
A:CRH9
|
4.4
|
0.8
|
1.0
|
|
C3'
|
A:DG5
|
4.4
|
0.2
|
1.0
|
|
C2'
|
A:DG5
|
4.4
|
0.2
|
1.0
|
|
O4'
|
A:DG5
|
4.5
|
0.2
|
1.0
|
|
C5'
|
A:DC4
|
4.6
|
0.2
|
1.0
|
|
C8
|
A:DG5
|
4.6
|
0.2
|
1.0
|
|
H4'
|
A:DG5
|
4.8
|
0.2
|
1.0
|
|
C1'
|
A:DC4
|
4.8
|
0.2
|
1.0
|
|
H3
|
A:CRH9
|
4.9
|
0.2
|
1.0
|
|
O5'
|
A:DC4
|
4.9
|
0.2
|
1.0
|
|
HO4
|
A:CRH9
|
4.9
|
0.9
|
1.0
|
|
C1'
|
A:DG5
|
5.0
|
0.2
|
1.0
|
|
Phosphorus binding site 5 out
of 10 in 146d
Go back to
Phosphorus Binding Sites List in 146d
Phosphorus binding site 5 out
of 10 in the Solution Structure of the Mithramycin Dimer-Dna Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Phosphorus with other atoms in the P binding
site number 5 of Solution Structure of the Mithramycin Dimer-Dna Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P6
b:0.3
occ:1.00
|
P
|
A:DA6
|
0.0
|
0.3
|
1.0
|
|
OP1
|
A:DA6
|
1.5
|
0.5
|
1.0
|
|
OP2
|
A:DA6
|
1.5
|
0.4
|
1.0
|
|
O5'
|
A:DA6
|
1.6
|
0.3
|
1.0
|
|
O3'
|
A:DG5
|
1.6
|
0.3
|
1.0
|
|
C3'
|
A:DG5
|
2.6
|
0.2
|
1.0
|
|
C5'
|
A:DA6
|
2.7
|
0.3
|
1.0
|
|
H3'
|
A:DG5
|
2.7
|
0.2
|
1.0
|
|
H21
|
A:DDA10
|
2.8
|
0.4
|
1.0
|
|
H5'
|
A:DA6
|
2.9
|
0.3
|
1.0
|
|
H5''
|
A:DA6
|
3.1
|
0.3
|
1.0
|
|
H2''
|
A:DG5
|
3.2
|
0.3
|
1.0
|
|
C2'
|
A:DG5
|
3.5
|
0.2
|
1.0
|
|
HO4
|
A:CRH9
|
3.5
|
0.9
|
1.0
|
|
C2
|
A:DDA10
|
3.8
|
0.3
|
1.0
|
|
H2'
|
A:DA6
|
3.8
|
0.2
|
1.0
|
|
H22
|
A:DDA10
|
3.9
|
0.4
|
1.0
|
|
C4'
|
A:DA6
|
3.9
|
0.2
|
1.0
|
|
C4'
|
A:DG5
|
3.9
|
0.2
|
1.0
|
|
H4'
|
A:DG5
|
4.0
|
0.2
|
1.0
|
|
H1'
|
A:DG5
|
4.0
|
0.3
|
1.0
|
|
H3'
|
A:DA6
|
4.0
|
0.2
|
1.0
|
|
O4'
|
A:CRH9
|
4.2
|
0.7
|
1.0
|
|
O1
|
A:DDL11
|
4.3
|
0.3
|
1.0
|
|
C1'
|
A:DG5
|
4.3
|
0.2
|
1.0
|
|
H2'
|
A:DG5
|
4.4
|
0.2
|
1.0
|
|
C3'
|
A:DA6
|
4.4
|
0.2
|
1.0
|
|
O4'
|
A:DA6
|
4.4
|
0.3
|
1.0
|
|
O1
|
A:DDA10
|
4.4
|
0.3
|
1.0
|
|
C2'
|
A:DA6
|
4.6
|
0.2
|
1.0
|
|
C3
|
A:DDA10
|
4.7
|
0.3
|
1.0
|
|
O4'
|
A:DG5
|
4.7
|
0.2
|
1.0
|
|
C1
|
A:DDA10
|
4.7
|
0.2
|
1.0
|
|
H4'
|
A:DA6
|
4.8
|
0.2
|
1.0
|
|
H5''
|
A:DG5
|
4.8
|
0.2
|
1.0
|
|
H22
|
A:DDL11
|
4.9
|
0.3
|
1.0
|
|
H21
|
A:DDL11
|
4.9
|
0.2
|
1.0
|
|
C5'
|
A:DG5
|
5.0
|
0.2
|
1.0
|
|
Phosphorus binding site 6 out
of 10 in 146d
Go back to
Phosphorus Binding Sites List in 146d
Phosphorus binding site 6 out
of 10 in the Solution Structure of the Mithramycin Dimer-Dna Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Phosphorus with other atoms in the P binding
site number 6 of Solution Structure of the Mithramycin Dimer-Dna Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:P8
b:0.2
occ:1.00
|
P
|
B:DC8
|
0.0
|
0.2
|
1.0
|
|
OP1
|
B:DC8
|
1.5
|
0.3
|
1.0
|
|
OP2
|
B:DC8
|
1.5
|
0.3
|
1.0
|
|
O5'
|
B:DC8
|
1.6
|
0.3
|
1.0
|
|
O3'
|
B:DT7
|
1.6
|
0.2
|
1.0
|
|
C3'
|
B:DT7
|
2.7
|
0.2
|
1.0
|
|
C5'
|
B:DC8
|
2.7
|
0.3
|
1.0
|
|
H3'
|
B:DT7
|
2.8
|
0.2
|
1.0
|
|
H5'
|
B:DC8
|
2.8
|
0.3
|
1.0
|
|
H5''
|
B:DC8
|
3.1
|
0.4
|
1.0
|
|
H6
|
B:DC8
|
3.2
|
0.2
|
1.0
|
|
H2'
|
B:DT7
|
3.3
|
0.3
|
1.0
|
|
C2'
|
B:DT7
|
3.4
|
0.2
|
1.0
|
|
H2''
|
B:DT7
|
3.7
|
0.3
|
1.0
|
|
C4'
|
B:DC8
|
4.0
|
0.2
|
1.0
|
|
C4'
|
B:DT7
|
4.0
|
0.2
|
1.0
|
|
H3'
|
B:DC8
|
4.0
|
0.3
|
1.0
|
|
H5''
|
B:DT7
|
4.2
|
0.4
|
1.0
|
|
O4'
|
B:DC8
|
4.2
|
0.2
|
1.0
|
|
H4'
|
B:DT7
|
4.3
|
0.3
|
1.0
|
|
C6
|
B:DC8
|
4.3
|
0.2
|
1.0
|
|
H5
|
B:DC8
|
4.5
|
0.4
|
1.0
|
|
C5'
|
B:DT7
|
4.6
|
0.3
|
1.0
|
|
C3'
|
B:DC8
|
4.6
|
0.2
|
1.0
|
|
C1'
|
B:DT7
|
4.8
|
0.3
|
1.0
|
|
H4'
|
B:DC8
|
4.8
|
0.3
|
1.0
|
|
O5'
|
B:DT7
|
4.9
|
0.4
|
1.0
|
|
C5
|
B:DC8
|
4.9
|
0.3
|
1.0
|
|
Phosphorus binding site 7 out
of 10 in 146d
Go back to
Phosphorus Binding Sites List in 146d
Phosphorus binding site 7 out
of 10 in the Solution Structure of the Mithramycin Dimer-Dna Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Phosphorus with other atoms in the P binding
site number 7 of Solution Structure of the Mithramycin Dimer-Dna Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:P9
b:0.3
occ:1.00
|
P
|
B:DG9
|
0.0
|
0.3
|
1.0
|
|
OP1
|
B:DG9
|
1.5
|
0.4
|
1.0
|
|
OP2
|
B:DG9
|
1.5
|
0.4
|
1.0
|
|
O5'
|
B:DG9
|
1.6
|
0.3
|
1.0
|
|
O3'
|
B:DC8
|
1.6
|
0.3
|
1.0
|
|
C5'
|
B:DG9
|
2.7
|
0.2
|
1.0
|
|
C3'
|
B:DC8
|
2.7
|
0.2
|
1.0
|
|
H3'
|
B:DC8
|
2.9
|
0.3
|
1.0
|
|
H5'
|
B:DG9
|
2.9
|
0.2
|
1.0
|
|
H5''
|
B:DG9
|
3.0
|
0.3
|
1.0
|
|
H8
|
B:DG9
|
3.1
|
0.2
|
1.0
|
|
H2'
|
B:DC8
|
3.3
|
0.2
|
1.0
|
|
C2'
|
B:DC8
|
3.4
|
0.2
|
1.0
|
|
H2'
|
B:DG9
|
3.5
|
0.2
|
1.0
|
|
H2''
|
B:DC8
|
3.8
|
0.2
|
1.0
|
|
C4'
|
B:DC8
|
4.0
|
0.2
|
1.0
|
|
C4'
|
B:DG9
|
4.0
|
0.2
|
1.0
|
|
H5''
|
B:DC8
|
4.1
|
0.4
|
1.0
|
|
C8
|
B:DG9
|
4.1
|
0.2
|
1.0
|
|
H4'
|
B:DC8
|
4.1
|
0.3
|
1.0
|
|
O4'
|
B:DG9
|
4.3
|
0.2
|
1.0
|
|
C2'
|
B:DG9
|
4.4
|
0.1
|
1.0
|
|
H3'
|
B:DG9
|
4.4
|
0.2
|
1.0
|
|
C5'
|
B:DC8
|
4.5
|
0.3
|
1.0
|
|
C3'
|
B:DG9
|
4.6
|
0.1
|
1.0
|
|
C1'
|
B:DC8
|
4.8
|
0.2
|
1.0
|
|
H4'
|
B:DG9
|
4.8
|
0.2
|
1.0
|
|
C1'
|
B:DG9
|
4.8
|
0.2
|
1.0
|
|
HO3
|
B:DDA1
|
4.8
|
0.6
|
1.0
|
|
N9
|
B:DG9
|
4.8
|
0.2
|
1.0
|
|
O5'
|
B:DC8
|
4.9
|
0.3
|
1.0
|
|
Phosphorus binding site 8 out
of 10 in 146d
Go back to
Phosphorus Binding Sites List in 146d
Phosphorus binding site 8 out
of 10 in the Solution Structure of the Mithramycin Dimer-Dna Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Phosphorus with other atoms in the P binding
site number 8 of Solution Structure of the Mithramycin Dimer-Dna Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:P10
b:0.2
occ:1.00
|
P
|
B:DC10
|
0.0
|
0.2
|
1.0
|
|
OP1
|
B:DC10
|
1.5
|
0.3
|
1.0
|
|
OP2
|
B:DC10
|
1.5
|
0.3
|
1.0
|
|
O5'
|
B:DC10
|
1.6
|
0.2
|
1.0
|
|
O3'
|
B:DG9
|
1.6
|
0.1
|
1.0
|
|
C5'
|
B:DC10
|
2.6
|
0.2
|
1.0
|
|
C3'
|
B:DG9
|
2.7
|
0.1
|
1.0
|
|
H5'
|
B:DC10
|
2.8
|
0.3
|
1.0
|
|
H3'
|
B:DG9
|
2.8
|
0.2
|
1.0
|
|
H5''
|
B:DC10
|
3.0
|
0.2
|
1.0
|
|
H2''
|
B:DG9
|
3.0
|
0.2
|
1.0
|
|
H3
|
B:DDA1
|
3.2
|
0.4
|
1.0
|
|
C2'
|
B:DG9
|
3.3
|
0.1
|
1.0
|
|
H5
|
B:DDA1
|
3.4
|
0.6
|
1.0
|
|
HO4
|
B:DDA1
|
3.5
|
0.9
|
1.0
|
|
H1
|
B:DDA1
|
3.6
|
0.4
|
1.0
|
|
H1'
|
B:DG9
|
3.7
|
0.2
|
1.0
|
|
H6
|
B:DC10
|
3.9
|
0.2
|
1.0
|
|
C4'
|
B:DC10
|
4.0
|
0.2
|
1.0
|
|
C4'
|
B:DG9
|
4.0
|
0.2
|
1.0
|
|
H4'
|
B:DG9
|
4.1
|
0.2
|
1.0
|
|
H3'
|
B:DC10
|
4.1
|
0.2
|
1.0
|
|
C1'
|
B:DG9
|
4.1
|
0.2
|
1.0
|
|
H22
|
B:DDA2
|
4.1
|
0.4
|
1.0
|
|
H2'
|
B:DG9
|
4.2
|
0.2
|
1.0
|
|
C3
|
B:DDA1
|
4.2
|
0.4
|
1.0
|
|
O4'
|
B:DC10
|
4.4
|
0.2
|
1.0
|
|
O4
|
B:DDA1
|
4.4
|
0.7
|
1.0
|
|
C5
|
B:DDA1
|
4.4
|
0.5
|
1.0
|
|
C3'
|
B:DC10
|
4.5
|
0.1
|
1.0
|
|
O4'
|
B:DG9
|
4.6
|
0.2
|
1.0
|
|
C1
|
B:DDA1
|
4.6
|
0.4
|
1.0
|
|
C4
|
B:DDA1
|
4.6
|
0.5
|
1.0
|
|
H152
|
B:CRH3
|
4.7
|
0.3
|
1.0
|
|
H4'
|
B:DC10
|
4.8
|
0.2
|
1.0
|
|
HO3
|
B:DDA1
|
4.8
|
0.6
|
1.0
|
|
C2
|
B:DDA1
|
4.9
|
0.4
|
1.0
|
|
H22
|
B:DDA1
|
4.9
|
0.4
|
1.0
|
|
C6
|
B:DC10
|
5.0
|
0.2
|
1.0
|
|
Phosphorus binding site 9 out
of 10 in 146d
Go back to
Phosphorus Binding Sites List in 146d
Phosphorus binding site 9 out
of 10 in the Solution Structure of the Mithramycin Dimer-Dna Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Phosphorus with other atoms in the P binding
site number 9 of Solution Structure of the Mithramycin Dimer-Dna Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:P11
b:0.2
occ:1.00
|
P
|
B:DG11
|
0.0
|
0.2
|
1.0
|
|
OP2
|
B:DG11
|
1.5
|
0.2
|
1.0
|
|
OP1
|
B:DG11
|
1.5
|
0.3
|
1.0
|
|
O5'
|
B:DG11
|
1.6
|
0.2
|
1.0
|
|
O3'
|
B:DC10
|
1.6
|
0.2
|
1.0
|
|
C5'
|
B:DG11
|
2.7
|
0.2
|
1.0
|
|
C3'
|
B:DC10
|
2.7
|
0.1
|
1.0
|
|
H3'
|
B:DC10
|
2.9
|
0.2
|
1.0
|
|
H5'
|
B:DG11
|
2.9
|
0.2
|
1.0
|
|
H5''
|
B:DG11
|
2.9
|
0.2
|
1.0
|
|
H2'
|
B:DC10
|
3.3
|
0.2
|
1.0
|
|
C2'
|
B:DC10
|
3.4
|
0.2
|
1.0
|
|
H2''
|
B:DC10
|
3.5
|
0.2
|
1.0
|
|
H2'
|
B:DG11
|
3.6
|
0.2
|
1.0
|
|
H8
|
B:DG11
|
3.6
|
0.2
|
1.0
|
|
C4'
|
B:DC10
|
4.0
|
0.2
|
1.0
|
|
C4'
|
B:DG11
|
4.0
|
0.2
|
1.0
|
|
H4'
|
B:DC10
|
4.1
|
0.2
|
1.0
|
|
H3'
|
B:DG11
|
4.1
|
0.2
|
1.0
|
|
H5''
|
B:DC10
|
4.2
|
0.2
|
1.0
|
|
H4'
|
B:CRH3
|
4.2
|
0.6
|
1.0
|
|
H4'1
|
B:CRH3
|
4.4
|
0.8
|
1.0
|
|
C3'
|
B:DG11
|
4.4
|
0.2
|
1.0
|
|
C2'
|
B:DG11
|
4.4
|
0.2
|
1.0
|
|
O4'
|
B:DG11
|
4.5
|
0.2
|
1.0
|
|
C5'
|
B:DC10
|
4.6
|
0.2
|
1.0
|
|
C8
|
B:DG11
|
4.6
|
0.2
|
1.0
|
|
H4'
|
B:DG11
|
4.8
|
0.2
|
1.0
|
|
C1'
|
B:DC10
|
4.8
|
0.2
|
1.0
|
|
H3
|
B:CRH3
|
4.9
|
0.2
|
1.0
|
|
HO4
|
B:CRH3
|
4.9
|
0.9
|
1.0
|
|
O5'
|
B:DC10
|
4.9
|
0.2
|
1.0
|
|
C1'
|
B:DG11
|
5.0
|
0.2
|
1.0
|
|
C4M
|
B:CRH3
|
5.0
|
0.6
|
1.0
|
|
Phosphorus binding site 10 out
of 10 in 146d
Go back to
Phosphorus Binding Sites List in 146d
Phosphorus binding site 10 out
of 10 in the Solution Structure of the Mithramycin Dimer-Dna Complex
 Mono view
 Stereo pair view
|
|
A full contact list of Phosphorus with other atoms in the P binding
site number 10 of Solution Structure of the Mithramycin Dimer-Dna Complex within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:P12
b:0.3
occ:1.00
|
P
|
B:DA12
|
0.0
|
0.3
|
1.0
|
|
OP1
|
B:DA12
|
1.5
|
0.5
|
1.0
|
|
OP2
|
B:DA12
|
1.5
|
0.4
|
1.0
|
|
O5'
|
B:DA12
|
1.6
|
0.3
|
1.0
|
|
O3'
|
B:DG11
|
1.6
|
0.3
|
1.0
|
|
C3'
|
B:DG11
|
2.6
|
0.2
|
1.0
|
|
H3'
|
B:DG11
|
2.7
|
0.2
|
1.0
|
|
C5'
|
B:DA12
|
2.7
|
0.2
|
1.0
|
|
H21
|
B:DDA4
|
2.8
|
0.3
|
1.0
|
|
H5'
|
B:DA12
|
2.9
|
0.3
|
1.0
|
|
H5''
|
B:DA12
|
3.1
|
0.3
|
1.0
|
|
H2''
|
B:DG11
|
3.2
|
0.3
|
1.0
|
|
C2'
|
B:DG11
|
3.5
|
0.2
|
1.0
|
|
HO4
|
B:CRH3
|
3.5
|
0.9
|
1.0
|
|
C2
|
B:DDA4
|
3.8
|
0.3
|
1.0
|
|
H2'
|
B:DA12
|
3.8
|
0.3
|
1.0
|
|
H22
|
B:DDA4
|
3.9
|
0.3
|
1.0
|
|
C4'
|
B:DA12
|
3.9
|
0.2
|
1.0
|
|
C4'
|
B:DG11
|
3.9
|
0.2
|
1.0
|
|
H1'
|
B:DG11
|
4.0
|
0.3
|
1.0
|
|
H4'
|
B:DG11
|
4.0
|
0.2
|
1.0
|
|
H3'
|
B:DA12
|
4.0
|
0.3
|
1.0
|
|
O4'
|
B:CRH3
|
4.2
|
0.6
|
1.0
|
|
O1
|
B:DDL5
|
4.3
|
0.2
|
1.0
|
|
C1'
|
B:DG11
|
4.3
|
0.2
|
1.0
|
|
H2'
|
B:DG11
|
4.4
|
0.2
|
1.0
|
|
C3'
|
B:DA12
|
4.4
|
0.2
|
1.0
|
|
O4'
|
B:DA12
|
4.4
|
0.3
|
1.0
|
|
O1
|
B:DDA4
|
4.5
|
0.2
|
1.0
|
|
C2'
|
B:DA12
|
4.6
|
0.3
|
1.0
|
|
O4'
|
B:DG11
|
4.7
|
0.2
|
1.0
|
|
C3
|
B:DDA4
|
4.7
|
0.2
|
1.0
|
|
C1
|
B:DDA4
|
4.8
|
0.2
|
1.0
|
|
H4'
|
B:DA12
|
4.8
|
0.3
|
1.0
|
|
H5''
|
B:DG11
|
4.8
|
0.2
|
1.0
|
|
H21
|
B:DDL5
|
4.9
|
0.2
|
1.0
|
|
H22
|
B:DDL5
|
4.9
|
0.2
|
1.0
|
|
C5'
|
B:DG11
|
5.0
|
0.2
|
1.0
|
|
Reference:
M.Sastry,
D.J.Patel.
Solution Structure of the Mithramycin Dimer-Dna Complex. Biochemistry V. 32 6588 1993.
ISSN: ISSN 0006-2960
PubMed: 8329387
DOI: 10.1021/BI00077A012
Page generated: Fri Sep 25 11:29:24 2020
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