Phosphorus in PDB 143d: Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex

Phosphorus Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 21;

Binding sites:

The binding sites of Phosphorus atom in the Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex (pdb code 143d). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 21 binding sites of Phosphorus where determined in the Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex, PDB code: 143d:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Phosphorus binding site 1 out of 21 in 143d

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Phosphorus binding site 1 out of 21 in the Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P2

b:0.9
occ:1.00
P A:DG2 0.0 0.9 1.0
OP2 A:DG2 1.5 1.1 1.0
OP1 A:DG2 1.5 1.1 1.0
O5' A:DG2 1.6 0.9 1.0
O3' A:DA1 1.6 0.8 1.0
C5' A:DG2 2.7 0.8 1.0
C3' A:DA1 2.7 0.7 1.0
H5'' A:DG2 2.8 0.8 1.0
H5' A:DG2 2.9 0.8 1.0
H3' A:DA1 2.9 0.7 1.0
H2'' A:DA1 2.9 0.7 1.0
C2' A:DA1 3.3 0.6 1.0
H1' A:DA1 3.5 0.8 1.0
H2' A:DG2 3.8 0.6 1.0
C4' A:DA1 4.0 0.8 1.0
H4' A:DA1 4.0 0.9 1.0
C4' A:DG2 4.0 0.7 1.0
C1' A:DA1 4.0 0.7 1.0
H2' A:DA1 4.2 0.6 1.0
H8 A:DG2 4.2 0.5 1.0
H3' A:DG2 4.4 0.8 1.0
O4' A:DG2 4.5 0.7 1.0
C3' A:DG2 4.6 0.7 1.0
O4' A:DA1 4.6 0.8 1.0
C2' A:DG2 4.6 0.6 1.0
H4' A:DG2 4.8 0.7 1.0

Phosphorus binding site 2 out of 21 in 143d

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Phosphorus binding site 2 out of 21 in the Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P3

b:0.7
occ:1.00
P A:DG3 0.0 0.7 1.0
OP1 A:DG3 1.5 0.7 1.0
OP2 A:DG3 1.5 0.8 1.0
O5' A:DG3 1.6 0.7 1.0
O3' A:DG2 1.6 0.7 1.0
C5' A:DG3 2.6 0.7 1.0
H5' A:DG3 2.7 0.7 1.0
C3' A:DG2 2.7 0.7 1.0
H3' A:DG2 2.8 0.8 1.0
H5'' A:DG3 3.2 0.8 1.0
H2'' A:DG2 3.2 0.6 1.0
C2' A:DG2 3.5 0.6 1.0
H1' A:DG2 3.8 0.7 1.0
C4' A:DG3 3.8 0.6 1.0
H4' A:DG2 3.8 0.7 1.0
C4' A:DG2 4.0 0.7 1.0
H4' A:DG3 4.0 0.6 1.0
C1' A:DG2 4.2 0.6 1.0
H3' A:DG3 4.4 0.6 1.0
H2' A:DG2 4.4 0.6 1.0
O4' A:DG2 4.6 0.7 1.0
O4' A:DG3 4.6 0.6 1.0
C3' A:DG3 4.7 0.6 1.0

Phosphorus binding site 3 out of 21 in 143d

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Phosphorus binding site 3 out of 21 in the Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4

b:0.5
occ:1.00
P A:DG4 0.0 0.5 1.0
OP2 A:DG4 1.5 0.6 1.0
OP1 A:DG4 1.5 0.6 1.0
O5' A:DG4 1.6 0.5 1.0
O3' A:DG3 1.6 0.5 1.0
H8 A:DG4 2.5 0.6 1.0
C3' A:DG3 2.6 0.6 1.0
H3' A:DG3 2.7 0.6 1.0
C5' A:DG4 2.8 0.5 1.0
H2' A:DG3 2.8 0.7 1.0
H5' A:DG4 3.1 0.6 1.0
H5'' A:DG4 3.1 0.6 1.0
C2' A:DG3 3.2 0.6 1.0
H2' A:DG4 3.3 0.5 1.0
C8 A:DG4 3.6 0.5 1.0
O4 A:DT17 3.6 1.2 1.0
H2'' A:DG3 3.9 0.7 1.0
C4' A:DG4 4.0 0.5 1.0
C4' A:DG3 4.1 0.6 1.0
C2' A:DG4 4.2 0.5 1.0
O4' A:DG4 4.2 0.6 1.0
C1' A:DG3 4.2 0.6 1.0
N3 A:DG3 4.3 0.5 1.0
H4' A:DG3 4.3 0.6 1.0
N7 A:DG4 4.4 0.5 1.0
N9 A:DG4 4.4 0.5 1.0
N9 A:DG3 4.5 0.5 1.0
C4 A:DG3 4.5 0.5 1.0
H3' A:DG4 4.5 0.5 1.0
C3' A:DG4 4.6 0.5 1.0
C1' A:DG4 4.6 0.5 1.0
C4 A:DT17 4.7 1.0 1.0
H72 A:DT6 4.7 1.3 1.0
H3 A:DT17 4.8 1.1 1.0
H4' A:DG4 4.8 0.6 1.0
H22 A:DG16 4.8 0.7 1.0
O4' A:DG3 4.8 0.6 1.0
H21 A:DG16 4.9 0.6 1.0

Phosphorus binding site 4 out of 21 in 143d

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Phosphorus binding site 4 out of 21 in the Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P5

b:0.8
occ:1.00
P A:DT5 0.0 0.8 1.0
OP1 A:DT5 1.5 1.1 1.0
OP2 A:DT5 1.5 0.8 1.0
O5' A:DT5 1.6 1.0 1.0
O3' A:DG4 1.6 0.6 1.0
C3' A:DG4 2.7 0.5 1.0
C5' A:DT5 2.7 1.1 1.0
H3' A:DG4 2.8 0.5 1.0
H5' A:DT5 2.8 1.2 1.0
H5'' A:DT5 3.1 1.5 1.0
H2'' A:DG4 3.4 0.6 1.0
C2' A:DG4 3.6 0.5 1.0
H3' A:DT5 3.8 1.1 1.0
H5' A:DT6 3.9 1.4 1.0
H1' A:DG4 3.9 0.6 1.0
C4' A:DG4 3.9 0.5 1.0
C4' A:DT5 3.9 1.2 1.0
H4' A:DG4 4.0 0.6 1.0
H4' A:DT5 4.2 1.4 1.0
C1' A:DG4 4.3 0.5 1.0
C3' A:DT5 4.3 1.1 1.0
H2' A:DT5 4.4 0.9 1.0
H2' A:DG4 4.4 0.5 1.0
O4' A:DG4 4.6 0.6 1.0
H6 A:DT6 4.7 0.7 1.0
C5' A:DT6 4.9 1.3 1.0

Phosphorus binding site 5 out of 21 in 143d

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Phosphorus binding site 5 out of 21 in the Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P6

b:1.9
occ:1.00
P A:DT6 0.0 1.9 1.0
OP2 A:DT6 1.5 2.5 1.0
OP1 A:DT6 1.5 2.4 1.0
O3' A:DT5 1.6 1.6 1.0
O5' A:DT6 1.6 1.4 1.0
C5' A:DT6 2.6 1.3 1.0
C3' A:DT5 2.7 1.1 1.0
H5'' A:DT6 2.7 1.6 1.0
H3' A:DT5 3.0 1.1 1.0
H5' A:DT6 3.0 1.4 1.0
H4' A:DT5 3.2 1.4 1.0
C4' A:DT5 3.5 1.2 1.0
H3' A:DT6 3.7 0.8 1.0
H1' A:DT5 3.7 1.6 1.0
H2'' A:DT5 3.8 1.2 1.0
C2' A:DT5 3.8 1.0 1.0
C4' A:DT6 3.9 0.9 1.0
H2' A:DT6 4.1 0.7 1.0
C1' A:DT5 4.2 1.2 1.0
C3' A:DT6 4.2 0.8 1.0
O4' A:DT5 4.3 1.4 1.0
O4' A:DT6 4.5 0.7 1.0
C2' A:DT6 4.6 0.7 1.0
H2' A:DT5 4.6 0.9 1.0
O5' A:DT5 4.7 1.0 1.0
H4' A:DT6 4.7 1.2 1.0
C5' A:DT5 4.7 1.1 1.0

Phosphorus binding site 6 out of 21 in 143d

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Phosphorus binding site 6 out of 21 in the Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P7

b:0.8
occ:1.00
P A:DA7 0.0 0.8 1.0
OP2 A:DA7 1.5 1.1 1.0
OP1 A:DA7 1.5 1.1 1.0
O3' A:DT6 1.6 0.8 1.0
O5' A:DA7 1.6 0.8 1.0
C5' A:DA7 2.6 0.8 1.0
C3' A:DT6 2.6 0.8 1.0
H5'' A:DA7 2.7 1.0 1.0
H3' A:DT6 2.8 0.8 1.0
H5' A:DA7 3.0 0.9 1.0
H2'' A:DT6 3.4 0.7 1.0
C2' A:DT6 3.5 0.7 1.0
H3' A:DA7 3.7 0.8 1.0
H2' A:DA7 3.8 0.6 1.0
H1' A:DT6 3.8 0.8 1.0
H4' A:DT6 3.8 1.2 1.0
C4' A:DT6 3.9 0.9 1.0
C4' A:DA7 3.9 0.7 1.0
C1' A:DT6 4.2 0.7 1.0
C3' A:DA7 4.2 0.7 1.0
H2' A:DT6 4.5 0.7 1.0
C2' A:DA7 4.5 0.6 1.0
O4' A:DA7 4.6 0.6 1.0
H5'' A:DT6 4.6 1.6 1.0
O4' A:DT6 4.7 0.7 1.0
H4' A:DA7 4.7 0.8 1.0
C5' A:DT6 4.9 1.3 1.0

Phosphorus binding site 7 out of 21 in 143d

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Phosphorus binding site 7 out of 21 in the Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 7 of Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P8

b:0.6
occ:1.00
P A:DG8 0.0 0.6 1.0
OP1 A:DG8 1.5 0.7 1.0
OP2 A:DG8 1.5 0.6 1.0
O5' A:DG8 1.6 0.8 1.0
O3' A:DA7 1.6 0.8 1.0
C3' A:DA7 2.7 0.7 1.0
C5' A:DG8 2.7 0.7 1.0
H3' A:DA7 2.7 0.8 1.0
H5'' A:DG8 2.9 0.9 1.0
H5' A:DG8 3.0 0.9 1.0
H4' A:DA7 3.5 0.8 1.0
C4' A:DA7 3.7 0.7 1.0
H2'' A:DA7 3.7 0.7 1.0
C2' A:DA7 3.8 0.6 1.0
H1' A:DA7 3.8 0.6 1.0
C4' A:DG8 3.9 0.7 1.0
H4' A:DG8 4.1 0.7 1.0
O4' A:DG8 4.3 0.7 1.0
H5'' A:DA7 4.3 1.0 1.0
C1' A:DA7 4.3 0.5 1.0
H2' A:DA7 4.6 0.6 1.0
C5' A:DA7 4.7 0.8 1.0
O4' A:DA7 4.7 0.6 1.0
H22 A:DG8 4.9 0.7 1.0

Phosphorus binding site 8 out of 21 in 143d

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Phosphorus binding site 8 out of 21 in the Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 8 of Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P9

b:1.0
occ:1.00
P A:DG9 0.0 1.0 1.0
OP1 A:DG9 1.5 1.1 1.0
OP2 A:DG9 1.5 1.2 1.0
O5' A:DG9 1.6 0.9 1.0
O3' A:DG8 1.6 0.9 1.0
C5' A:DG9 2.6 0.8 1.0
C3' A:DG8 2.8 0.7 1.0
H4' A:DG8 2.9 0.7 1.0
H1' A:DG8 2.9 0.8 1.0
H5' A:DG9 2.9 0.9 1.0
H5'' A:DG9 3.0 0.7 1.0
C4' A:DG8 3.3 0.7 1.0
C2' A:DG8 3.4 0.6 1.0
C1' A:DG8 3.4 0.7 1.0
H2'' A:DG8 3.4 0.7 1.0
H3' A:DG8 3.6 0.7 1.0
O4' A:DG8 3.7 0.7 1.0
C4' A:DG9 4.0 0.7 1.0
H4' A:DG9 4.2 0.8 1.0
H2' A:DG8 4.4 0.6 1.0
O4' A:DG9 4.5 0.6 1.0
C5' A:DG8 4.7 0.7 1.0
N9 A:DG8 4.8 0.5 1.0
H5' A:DG8 4.8 0.9 1.0

Phosphorus binding site 9 out of 21 in 143d

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Phosphorus binding site 9 out of 21 in the Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 9 of Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P10

b:1.0
occ:1.00
P A:DG10 0.0 1.0 1.0
OP1 A:DG10 1.5 1.2 1.0
OP2 A:DG10 1.5 1.0 1.0
O3' A:DG9 1.6 0.8 1.0
O5' A:DG10 1.6 1.1 1.0
C5' A:DG10 2.6 1.0 1.0
C3' A:DG9 2.6 0.7 1.0
H5' A:DG10 2.7 1.0 1.0
H3' A:DG9 2.9 0.8 1.0
H2'' A:DG9 3.1 0.7 1.0
H5'' A:DG10 3.2 1.0 1.0
H3' A:DG10 3.3 1.0 1.0
C2' A:DG9 3.3 0.6 1.0
H1' A:DG9 3.4 0.5 1.0
H22 A:DG10 3.7 0.7 1.0
C4' A:DG10 3.8 0.9 1.0
H4' A:DG9 3.9 0.8 1.0
C4' A:DG9 3.9 0.7 1.0
C1' A:DG9 3.9 0.5 1.0
C3' A:DG10 4.0 0.9 1.0
H2' A:DG10 4.2 1.0 1.0
H4' A:DG10 4.3 0.9 1.0
H2' A:DG9 4.3 0.6 1.0
O4' A:DG9 4.5 0.6 1.0
N2 A:DG10 4.7 0.6 1.0
N3 A:DG10 4.7 0.6 1.0
C2' A:DG10 4.7 0.9 1.0
H5' A:DG9 4.9 0.9 1.0
O4' A:DG10 5.0 0.9 1.0

Phosphorus binding site 10 out of 21 in 143d

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Phosphorus binding site 10 out of 21 in the Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 10 of Solution Structure of the Human Telomeric Repeat D(AG3[T2AG3]3) of the G-Quadruplex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P11

b:0.9
occ:1.00
P A:DT11 0.0 0.9 1.0
OP1 A:DT11 1.5 1.0 1.0
OP2 A:DT11 1.5 1.1 1.0
O3' A:DG10 1.6 0.8 1.0
O5' A:DT11 1.6 0.9 1.0
C3' A:DG10 2.6 0.9 1.0
C5' A:DT11 2.7 0.9 1.0
H3' A:DG10 2.8 1.0 1.0
H6 A:DT11 2.9 0.8 1.0
H5' A:DT11 2.9 0.9 1.0
H2'' A:DG10 2.9 0.9 1.0
H72 A:DT11 3.0 0.9 1.0
H5'' A:DT11 3.1 1.0 1.0
C2' A:DG10 3.3 0.9 1.0
H2' A:DT11 3.4 0.9 1.0
C6 A:DT11 3.6 0.8 1.0
C7 A:DT11 3.8 0.8 1.0
C4' A:DG10 4.0 0.9 1.0
H1' A:DG10 4.0 0.9 1.0
C5 A:DT11 4.1 0.8 1.0
C4' A:DT11 4.1 1.0 1.0
H71 A:DT11 4.1 0.8 1.0
H2' A:DG10 4.1 1.0 1.0
H4' A:DG10 4.1 0.9 1.0
C1' A:DG10 4.2 0.8 1.0
C2' A:DT11 4.3 1.0 1.0
O4' A:DT11 4.4 1.0 1.0
N1 A:DT11 4.5 0.9 1.0
H3' A:DT11 4.5 1.2 1.0
C3' A:DT11 4.6 1.1 1.0
O4' A:DG10 4.6 0.9 1.0
C1' A:DT11 4.7 0.9 1.0
H73 A:DT11 4.7 0.9 1.0
H4' A:DT11 4.9 1.1 1.0

Reference:

Y.Wang, D.J.Patel. Solution Structure of the Human Telomeric Repeat D[AG3(T2AG3)3] G-Tetraplex. Structure V. 1 263 1993.
ISSN: ISSN 0969-2126
PubMed: 8081740
DOI: 10.1016/0969-2126(93)90015-9
Page generated: Fri Sep 25 11:27:07 2020

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