Phosphorus in PDB 141d: Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra

Phosphorus Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 24;

Binding sites:

The binding sites of Phosphorus atom in the Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra (pdb code 141d). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 24 binding sites of Phosphorus where determined in the Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra, PDB code: 141d:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Phosphorus binding site 1 out of 24 in 141d

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Phosphorus binding site 1 out of 24 in the Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P2

b:0.0
occ:1.00
P A:DG2 0.0 0.0 1.0
OP1 A:DG2 1.5 0.0 1.0
OP2 A:DG2 1.5 0.0 1.0
O5' A:DG2 1.6 0.0 1.0
O3' A:DA1 1.6 0.0 1.0
C5' A:DG2 2.6 0.0 1.0
C3' A:DA1 2.7 0.0 1.0
C2' A:DA1 3.2 0.0 1.0
C4' A:DA1 4.0 0.0 1.0
C4' A:DG2 4.0 0.0 1.0
C1' A:DA1 4.2 0.0 1.0
C3' A:DG2 4.4 0.0 1.0
O4' A:DG2 4.6 0.0 1.0
O4' A:DA1 4.6 0.0 1.0

Phosphorus binding site 2 out of 24 in 141d

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Phosphorus binding site 2 out of 24 in the Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P3

b:0.0
occ:1.00
P A:DC3 0.0 0.0 1.0
OP2 A:DC3 1.5 0.0 1.0
OP1 A:DC3 1.5 0.0 1.0
O5' A:DC3 1.6 0.0 1.0
O3' A:DG2 1.6 0.0 1.0
C5' A:DC3 2.6 0.0 1.0
C3' A:DG2 2.7 0.0 1.0
C2' A:DG2 3.2 0.0 1.0
C4' A:DG2 3.9 0.0 1.0
C4' A:DC3 4.0 0.0 1.0
C1' A:DG2 4.2 0.0 1.0
O4' A:DC3 4.4 0.0 1.0
C3' A:DC3 4.5 0.0 1.0
O4' A:DG2 4.7 0.0 1.0

Phosphorus binding site 3 out of 24 in 141d

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Phosphorus binding site 3 out of 24 in the Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4

b:0.0
occ:1.00
P A:DT4 0.0 0.0 1.0
OP1 A:DT4 1.5 0.0 1.0
OP2 A:DT4 1.5 0.0 1.0
O5' A:DT4 1.6 0.0 1.0
O3' A:DC3 1.6 0.0 1.0
C5' A:DT4 2.6 0.0 1.0
C3' A:DC3 2.7 0.0 1.0
C2' A:DC3 3.3 0.0 1.0
C4' A:DC3 4.0 0.0 1.0
C4' A:DT4 4.0 0.0 1.0
C1' A:DC3 4.4 0.0 1.0
C3' A:DT4 4.5 0.0 1.0
O4' A:DT4 4.7 0.0 1.0
O4' A:DC3 4.8 0.0 1.0
C5' A:DC3 4.9 0.0 1.0

Phosphorus binding site 4 out of 24 in 141d

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Phosphorus binding site 4 out of 24 in the Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P5

b:0.0
occ:1.00
P A:DT5 0.0 0.0 1.0
OP1 A:DT5 1.5 0.0 1.0
OP2 A:DT5 1.5 0.0 1.0
O5' A:DT5 1.6 0.0 1.0
O3' A:DT4 1.6 0.0 1.0
C5' A:DT5 2.6 0.0 1.0
C3' A:DT4 2.7 0.0 1.0
C2' A:DT4 3.2 0.0 1.0
C4' A:DT5 4.0 0.0 1.0
C4' A:DT4 4.0 0.0 1.0
C1' A:DT4 4.4 0.0 1.0
C3' A:DT5 4.5 0.0 1.0
O4' A:DT5 4.6 0.0 1.0
O4' A:DT4 4.9 0.0 1.0
C5' A:DT4 4.9 0.0 1.0

Phosphorus binding site 5 out of 24 in 141d

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Phosphorus binding site 5 out of 24 in the Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P6

b:0.0
occ:1.00
P A:DG6 0.0 0.0 1.0
OP2 A:DG6 1.5 0.0 1.0
OP1 A:DG6 1.5 0.0 1.0
O5' A:DG6 1.6 0.0 1.0
O3' A:DT5 1.6 0.0 1.0
C5' A:DG6 2.6 0.0 1.0
C3' A:DT5 2.7 0.0 1.0
C2' A:DT5 3.3 0.0 1.0
C4' A:DG6 4.0 0.0 1.0
C4' A:DT5 4.0 0.0 1.0
C1' A:DT5 4.4 0.0 1.0
O4' A:DG6 4.5 0.0 1.0
C3' A:DG6 4.6 0.0 1.0
O4' A:DT5 4.9 0.0 1.0
C5' A:DT5 4.9 0.0 1.0

Phosphorus binding site 6 out of 24 in 141d

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Phosphorus binding site 6 out of 24 in the Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P7

b:0.0
occ:1.00
P A:DC7 0.0 0.0 1.0
OP1 A:DC7 1.5 0.0 1.0
OP2 A:DC7 1.5 0.0 1.0
O5' A:DC7 1.6 0.0 1.0
O3' A:DG6 1.6 0.0 1.0
C5' A:DC7 2.6 0.0 1.0
C3' A:DG6 2.6 0.0 1.0
C2' A:DG6 3.3 0.0 1.0
C4' A:DC7 4.0 0.0 1.0
C4' A:DG6 4.0 0.0 1.0
C3' A:DC7 4.4 0.0 1.0
C1' A:DG6 4.6 0.0 1.0
O4' A:DC7 4.7 0.0 1.0
C5' A:DG6 4.9 0.0 1.0
C2' A:DC7 4.9 0.0 1.0
O4' A:DG6 4.9 0.0 1.0

Phosphorus binding site 7 out of 24 in 141d

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Phosphorus binding site 7 out of 24 in the Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 7 of Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P8

b:0.0
occ:1.00
P A:DC8 0.0 0.0 1.0
OP1 A:DC8 1.5 0.0 1.0
OP2 A:DC8 1.5 0.0 1.0
O5' A:DC8 1.6 0.0 1.0
O3' A:DC7 1.6 0.0 1.0
C5' A:DC8 2.6 0.0 1.0
C3' A:DC7 2.7 0.0 1.0
C2' A:DC7 3.3 0.0 1.0
C4' A:DC7 3.9 0.0 1.0
C4' A:DC8 4.0 0.0 1.0
C1' A:DC7 4.2 0.0 1.0
C3' A:DC8 4.5 0.0 1.0
O4' A:DC8 4.5 0.0 1.0
O4' A:DC7 4.7 0.0 1.0

Phosphorus binding site 8 out of 24 in 141d

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Phosphorus binding site 8 out of 24 in the Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 8 of Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P9

b:0.0
occ:1.00
P A:DT9 0.0 0.0 1.0
OP1 A:DT9 1.5 0.0 1.0
OP2 A:DT9 1.5 0.0 1.0
O5' A:DT9 1.6 0.0 1.0
O3' A:DC8 1.6 0.0 1.0
C5' A:DT9 2.6 0.0 1.0
C3' A:DC8 2.7 0.0 1.0
C2' A:DC8 3.2 0.0 1.0
C4' A:DC8 4.0 0.0 1.0
C4' A:DT9 4.0 0.0 1.0
C1' A:DC8 4.3 0.0 1.0
C3' A:DT9 4.4 0.0 1.0
O4' A:DT9 4.5 0.0 1.0
O4' A:DC8 4.8 0.0 1.0
C5' A:DC8 5.0 0.0 1.0

Phosphorus binding site 9 out of 24 in 141d

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Phosphorus binding site 9 out of 24 in the Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 9 of Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P10

b:0.0
occ:1.00
P A:DT10 0.0 0.0 1.0
OP1 A:DT10 1.5 0.0 1.0
OP2 A:DT10 1.5 0.0 1.0
O5' A:DT10 1.6 0.0 1.0
O3' A:DT9 1.6 0.0 1.0
C5' A:DT10 2.6 0.0 1.0
C3' A:DT9 2.7 0.0 1.0
C2' A:DT9 3.2 0.0 1.0
C4' A:DT9 4.0 0.0 1.0
C4' A:DT10 4.0 0.0 1.0
C1' A:DT9 4.3 0.0 1.0
C3' A:DT10 4.5 0.0 1.0
O4' A:DT10 4.5 0.0 1.0
O4' A:DT9 4.8 0.0 1.0
C5' A:DT9 5.0 0.0 1.0

Phosphorus binding site 10 out of 24 in 141d

Go back to Phosphorus Binding Sites List in 141d
Phosphorus binding site 10 out of 24 in the Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 10 of Solution Structure of A Conserved Dna Sequence From the Hiv- 1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two- Dimensional uc(Nmr) Spectra within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P11

b:0.0
occ:1.00
P A:DG11 0.0 0.0 1.0
OP2 A:DG11 1.5 0.0 1.0
OP1 A:DG11 1.5 0.0 1.0
O5' A:DG11 1.6 0.0 1.0
O3' A:DT10 1.6 0.0 1.0
C5' A:DG11 2.6 0.0 1.0
C3' A:DT10 2.7 0.0 1.0
C2' A:DT10 3.3 0.0 1.0
C4' A:DG11 4.0 0.0 1.0
C4' A:DT10 4.0 0.0 1.0
O4' A:DG11 4.5 0.0 1.0
C3' A:DG11 4.5 0.0 1.0
C1' A:DT10 4.5 0.0 1.0
C2' A:DG11 4.8 0.0 1.0
O4' A:DT10 4.9 0.0 1.0
C5' A:DT10 4.9 0.0 1.0

Reference:

A.Mujeeb, S.M.Kerwin, G.L.Kenyon, T.L.James. Solution Structure of A Conserved Dna Sequence From the Hiv-1 Genome: Restrained Molecular Dynamics Simulation with Distance and Torsion Angle Restraints Derived From Two-Dimensional uc(Nmr) Spectra. Biochemistry V. 32 13419 1993.
ISSN: ISSN 0006-2960
PubMed: 8257678
DOI: 10.1021/BI00212A007
Page generated: Fri Sep 25 11:25:45 2020

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