Phosphorus in PDB 136d: Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples
Phosphorus Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
22;
Binding sites:
The binding sites of Phosphorus atom in the Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples
(pdb code 136d). This binding sites where shown within
5.0 Angstroms radius around Phosphorus atom.
In total 22 binding sites of Phosphorus where determined in the
Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples, PDB code: 136d:
Jump to Phosphorus binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Phosphorus binding site 1 out
of 22 in 136d
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Phosphorus Binding Sites List in 136d
Phosphorus binding site 1 out
of 22 in the Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 1 of Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P2
b:0.0
occ:1.00
|
P
|
A:DC2
|
0.0
|
0.0
|
1.0
|
OP2
|
A:DC2
|
1.5
|
0.0
|
1.0
|
OP1
|
A:DC2
|
1.5
|
0.0
|
1.0
|
O3'
|
A:DT1
|
1.6
|
0.0
|
1.0
|
O5'
|
A:DC2
|
1.6
|
0.0
|
1.0
|
C3'
|
A:DT1
|
2.6
|
0.0
|
1.0
|
C5'
|
A:DC2
|
2.6
|
0.0
|
1.0
|
H2''
|
A:DT1
|
2.7
|
0.0
|
1.0
|
H5''
|
A:DC2
|
2.7
|
0.0
|
1.0
|
H3'
|
A:DT1
|
3.0
|
0.0
|
1.0
|
H5'
|
A:DC2
|
3.1
|
0.0
|
1.0
|
C2'
|
A:DT1
|
3.1
|
0.0
|
1.0
|
H6
|
A:DC2
|
3.7
|
0.0
|
1.0
|
H2'
|
A:DC2
|
3.7
|
0.0
|
1.0
|
H2'
|
A:DT1
|
3.8
|
0.0
|
1.0
|
H4'
|
A:DT1
|
3.8
|
0.0
|
1.0
|
C4'
|
A:DT1
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DC2
|
3.9
|
0.0
|
1.0
|
O4'
|
A:DC2
|
4.3
|
0.0
|
1.0
|
C1'
|
A:DT1
|
4.3
|
0.0
|
1.0
|
H3'
|
A:DC2
|
4.5
|
0.0
|
1.0
|
H5''
|
A:DT1
|
4.5
|
0.0
|
1.0
|
C2'
|
A:DC2
|
4.5
|
0.0
|
1.0
|
C3'
|
A:DC2
|
4.6
|
0.0
|
1.0
|
H1'
|
A:DT1
|
4.6
|
0.0
|
1.0
|
C6
|
A:DC2
|
4.6
|
0.0
|
1.0
|
O4'
|
A:DT1
|
4.7
|
0.0
|
1.0
|
H4'
|
A:DC2
|
4.7
|
0.0
|
1.0
|
C5'
|
A:DT1
|
4.8
|
0.0
|
1.0
|
HO5'
|
A:DT1
|
4.8
|
0.0
|
1.0
|
|
Phosphorus binding site 2 out
of 22 in 136d
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Phosphorus Binding Sites List in 136d
Phosphorus binding site 2 out
of 22 in the Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 2 of Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P3
b:0.0
occ:1.00
|
P
|
A:DC3
|
0.0
|
0.0
|
1.0
|
OP2
|
A:DC3
|
1.5
|
0.0
|
1.0
|
OP1
|
A:DC3
|
1.5
|
0.0
|
1.0
|
O5'
|
A:DC3
|
1.6
|
0.0
|
1.0
|
O3'
|
A:DC2
|
1.7
|
0.0
|
1.0
|
C5'
|
A:DC3
|
2.6
|
0.0
|
1.0
|
H2''
|
A:DC2
|
2.7
|
0.0
|
1.0
|
H5''
|
A:DC3
|
2.8
|
0.0
|
1.0
|
C3'
|
A:DC2
|
2.9
|
0.0
|
1.0
|
H5'
|
A:DC3
|
3.0
|
0.0
|
1.0
|
H3'
|
A:DC2
|
3.1
|
0.0
|
1.0
|
C2'
|
A:DC2
|
3.3
|
0.0
|
1.0
|
H6
|
A:DC3
|
3.4
|
0.0
|
1.0
|
H1'
|
A:DC2
|
3.6
|
0.0
|
1.0
|
H2'
|
A:DC3
|
3.7
|
0.0
|
1.0
|
C1'
|
A:DC2
|
3.9
|
0.0
|
1.0
|
H3'
|
A:DC3
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DC3
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DC2
|
4.2
|
0.0
|
1.0
|
H2'
|
A:DC2
|
4.2
|
0.0
|
1.0
|
H4'
|
A:DC2
|
4.3
|
0.0
|
1.0
|
C3'
|
A:DC3
|
4.3
|
0.0
|
1.0
|
C6
|
A:DC3
|
4.4
|
0.0
|
1.0
|
O4'
|
A:DC3
|
4.5
|
0.0
|
1.0
|
C2'
|
A:DC3
|
4.6
|
0.0
|
1.0
|
O4'
|
A:DC2
|
4.6
|
0.0
|
1.0
|
H4'
|
A:DC3
|
4.6
|
0.0
|
1.0
|
|
Phosphorus binding site 3 out
of 22 in 136d
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Phosphorus Binding Sites List in 136d
Phosphorus binding site 3 out
of 22 in the Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 3 of Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P4
b:0.0
occ:1.00
|
P
|
A:DT4
|
0.0
|
0.0
|
1.0
|
OP2
|
A:DT4
|
1.5
|
0.0
|
1.0
|
OP1
|
A:DT4
|
1.5
|
0.0
|
1.0
|
O3'
|
A:DC3
|
1.6
|
0.0
|
1.0
|
O5'
|
A:DT4
|
1.6
|
0.0
|
1.0
|
C3'
|
A:DC3
|
2.6
|
0.0
|
1.0
|
H3'
|
A:DC3
|
2.7
|
0.0
|
1.0
|
C5'
|
A:DT4
|
2.8
|
0.0
|
1.0
|
H5'
|
A:DT4
|
3.0
|
0.0
|
1.0
|
H2''
|
A:DC3
|
3.0
|
0.0
|
1.0
|
C2'
|
A:DC3
|
3.3
|
0.0
|
1.0
|
H5''
|
A:DT4
|
3.3
|
0.0
|
1.0
|
C4'
|
A:DC3
|
3.9
|
0.0
|
1.0
|
H2'
|
A:DC3
|
3.9
|
0.0
|
1.0
|
H3'
|
A:DT4
|
4.0
|
0.0
|
1.0
|
C4'
|
A:DT4
|
4.0
|
0.0
|
1.0
|
H4'
|
A:DC3
|
4.1
|
0.0
|
1.0
|
H1'
|
A:DC3
|
4.3
|
0.0
|
1.0
|
O4'
|
A:DT4
|
4.3
|
0.0
|
1.0
|
C1'
|
A:DC3
|
4.4
|
0.0
|
1.0
|
C3'
|
A:DT4
|
4.6
|
0.0
|
1.0
|
O4'
|
A:DC3
|
4.7
|
0.0
|
1.0
|
H5''
|
A:DC3
|
4.7
|
0.0
|
1.0
|
H4'
|
A:DT4
|
4.8
|
0.0
|
1.0
|
C5'
|
A:DC3
|
4.9
|
0.0
|
1.0
|
H2'
|
A:DT4
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 4 out
of 22 in 136d
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Phosphorus Binding Sites List in 136d
Phosphorus binding site 4 out
of 22 in the Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 4 of Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P5
b:0.0
occ:1.00
|
P
|
A:DC5
|
0.0
|
0.0
|
1.0
|
OP2
|
A:DC5
|
1.4
|
0.0
|
1.0
|
OP1
|
A:DC5
|
1.5
|
0.0
|
1.0
|
O3'
|
A:DT4
|
1.6
|
0.0
|
1.0
|
O5'
|
A:DC5
|
1.6
|
0.0
|
1.0
|
C3'
|
A:DT4
|
2.7
|
0.0
|
1.0
|
C5'
|
A:DC5
|
2.8
|
0.0
|
1.0
|
H3'
|
A:DT4
|
2.8
|
0.0
|
1.0
|
O4'
|
A:DC5
|
3.1
|
0.0
|
1.0
|
H5'
|
A:DC5
|
3.2
|
0.0
|
1.0
|
H2''
|
A:DT4
|
3.3
|
0.0
|
1.0
|
H6
|
A:DC5
|
3.4
|
0.0
|
1.0
|
C4'
|
A:DC5
|
3.4
|
0.0
|
1.0
|
C2'
|
A:DT4
|
3.5
|
0.0
|
1.0
|
H3'
|
A:DC5
|
3.5
|
0.0
|
1.0
|
H5''
|
A:DC5
|
3.5
|
0.0
|
1.0
|
C3'
|
A:DC5
|
3.9
|
0.0
|
1.0
|
H4'
|
A:DT4
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DT4
|
3.9
|
0.0
|
1.0
|
H2'
|
A:DT4
|
4.1
|
0.0
|
1.0
|
C6
|
A:DC5
|
4.2
|
0.0
|
1.0
|
H2'
|
A:DC5
|
4.2
|
0.0
|
1.0
|
C1'
|
A:DC5
|
4.3
|
0.0
|
1.0
|
C2'
|
A:DC5
|
4.4
|
0.0
|
1.0
|
H5''
|
A:DT4
|
4.4
|
0.0
|
1.0
|
H4'
|
A:DC5
|
4.5
|
0.0
|
1.0
|
H1'
|
A:DT4
|
4.5
|
0.0
|
1.0
|
N1
|
A:DC5
|
4.6
|
0.0
|
1.0
|
C1'
|
A:DT4
|
4.6
|
0.0
|
1.0
|
C5'
|
A:DT4
|
4.8
|
0.0
|
1.0
|
O4'
|
A:DT4
|
4.9
|
0.0
|
1.0
|
|
Phosphorus binding site 5 out
of 22 in 136d
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Phosphorus Binding Sites List in 136d
Phosphorus binding site 5 out
of 22 in the Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 5 of Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P6
b:0.0
occ:1.00
|
P
|
A:DC6
|
0.0
|
0.0
|
1.0
|
OP2
|
A:DC6
|
1.4
|
0.0
|
1.0
|
OP1
|
A:DC6
|
1.5
|
0.0
|
1.0
|
O5'
|
A:DC6
|
1.6
|
0.0
|
1.0
|
O3'
|
A:DC5
|
1.6
|
0.0
|
1.0
|
C5'
|
A:DC6
|
2.7
|
0.0
|
1.0
|
C3'
|
A:DC5
|
2.7
|
0.0
|
1.0
|
H2''
|
A:DC5
|
2.9
|
0.0
|
1.0
|
H3'
|
A:DC5
|
3.0
|
0.0
|
1.0
|
H3'
|
A:DC6
|
3.0
|
0.0
|
1.0
|
H5'
|
A:DC6
|
3.1
|
0.0
|
1.0
|
O4'
|
A:DC6
|
3.2
|
0.0
|
1.0
|
C2'
|
A:DC5
|
3.2
|
0.0
|
1.0
|
H6
|
A:DC6
|
3.3
|
0.0
|
1.0
|
C4'
|
A:DC6
|
3.3
|
0.0
|
1.0
|
H5''
|
A:DC6
|
3.5
|
0.0
|
1.0
|
H2'
|
A:DC5
|
3.6
|
0.0
|
1.0
|
C3'
|
A:DC6
|
3.7
|
0.0
|
1.0
|
H4'
|
A:DC5
|
4.0
|
0.0
|
1.0
|
C4'
|
A:DC5
|
4.0
|
0.0
|
1.0
|
C6
|
A:DC6
|
4.2
|
0.0
|
1.0
|
H2'
|
A:DC6
|
4.3
|
0.0
|
1.0
|
C1'
|
A:DC6
|
4.3
|
0.0
|
1.0
|
H4'
|
A:DC6
|
4.4
|
0.0
|
1.0
|
C2'
|
A:DC6
|
4.4
|
0.0
|
1.0
|
C1'
|
A:DC5
|
4.5
|
0.0
|
1.0
|
H1'
|
A:DC5
|
4.5
|
0.0
|
1.0
|
N1
|
A:DC6
|
4.7
|
0.0
|
1.0
|
H5''
|
A:DC5
|
4.8
|
0.0
|
1.0
|
O4'
|
A:DC5
|
4.9
|
0.0
|
1.0
|
O3'
|
A:DC6
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 6 out
of 22 in 136d
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Phosphorus Binding Sites List in 136d
Phosphorus binding site 6 out
of 22 in the Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 6 of Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P7
b:0.0
occ:1.00
|
P
|
A:DT7
|
0.0
|
0.0
|
1.0
|
OP2
|
A:DT7
|
1.5
|
0.0
|
1.0
|
OP1
|
A:DT7
|
1.5
|
0.0
|
1.0
|
O3'
|
A:DC6
|
1.6
|
0.0
|
1.0
|
O5'
|
A:DT7
|
1.7
|
0.0
|
1.0
|
C5'
|
A:DT7
|
2.7
|
0.0
|
1.0
|
C3'
|
A:DC6
|
2.7
|
0.0
|
1.0
|
H2''
|
A:DC6
|
2.9
|
0.0
|
1.0
|
H5'
|
A:DT7
|
3.0
|
0.0
|
1.0
|
H5''
|
A:DT7
|
3.0
|
0.0
|
1.0
|
C2'
|
A:DC6
|
3.1
|
0.0
|
1.0
|
H3'
|
A:DC6
|
3.1
|
0.0
|
1.0
|
H3'
|
A:DT7
|
3.5
|
0.0
|
1.0
|
H2'
|
A:DC6
|
3.5
|
0.0
|
1.0
|
C4'
|
A:DT7
|
4.0
|
0.0
|
1.0
|
H4'
|
A:DC6
|
4.0
|
0.0
|
1.0
|
C4'
|
A:DC6
|
4.1
|
0.0
|
1.0
|
C3'
|
A:DT7
|
4.2
|
0.0
|
1.0
|
O4'
|
A:DT7
|
4.3
|
0.0
|
1.0
|
H2'
|
A:DT7
|
4.3
|
0.0
|
1.0
|
H6
|
A:DT7
|
4.4
|
0.0
|
1.0
|
C1'
|
A:DC6
|
4.5
|
0.0
|
1.0
|
H5''
|
A:DC6
|
4.6
|
0.0
|
1.0
|
C2'
|
A:DT7
|
4.7
|
0.0
|
1.0
|
H4'
|
A:DT7
|
4.8
|
0.0
|
1.0
|
H1'
|
A:DC6
|
4.9
|
0.0
|
1.0
|
C5'
|
A:DC6
|
5.0
|
0.0
|
1.0
|
O4'
|
A:DC6
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 7 out
of 22 in 136d
Go back to
Phosphorus Binding Sites List in 136d
Phosphorus binding site 7 out
of 22 in the Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 7 of Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P1
b:0.0
occ:1.00
|
P
|
A:DT1L
|
0.0
|
0.0
|
1.0
|
OP2
|
A:DT1L
|
1.4
|
0.0
|
1.0
|
OP1
|
A:DT1L
|
1.5
|
0.0
|
1.0
|
O3'
|
A:DT7
|
1.6
|
0.0
|
1.0
|
O5'
|
A:DT1L
|
1.7
|
0.0
|
1.0
|
C3'
|
A:DT7
|
2.7
|
0.0
|
1.0
|
C5'
|
A:DT1L
|
2.8
|
0.0
|
1.0
|
H5''
|
A:DT1L
|
2.9
|
0.0
|
1.0
|
H2''
|
A:DT7
|
3.0
|
0.0
|
1.0
|
H5'
|
A:DT1L
|
3.0
|
0.0
|
1.0
|
H3'
|
A:DT7
|
3.1
|
0.0
|
1.0
|
C2'
|
A:DT7
|
3.4
|
0.0
|
1.0
|
H6
|
A:DT1L
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DT7
|
3.9
|
0.0
|
1.0
|
H4'
|
A:DT7
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DT1L
|
4.1
|
0.0
|
1.0
|
H1'
|
A:DT7
|
4.2
|
0.0
|
1.0
|
H2'
|
A:DT7
|
4.2
|
0.0
|
1.0
|
H2'
|
A:DT1L
|
4.2
|
0.0
|
1.0
|
C1'
|
A:DT7
|
4.3
|
0.0
|
1.0
|
O4'
|
A:DT1L
|
4.5
|
0.0
|
1.0
|
H5''
|
A:DT7
|
4.7
|
0.0
|
1.0
|
H3'
|
A:DT1L
|
4.7
|
0.0
|
1.0
|
H71
|
A:DT1L
|
4.8
|
0.0
|
1.0
|
C6
|
A:DT1L
|
4.9
|
0.0
|
1.0
|
C5'
|
A:DT7
|
4.9
|
0.0
|
1.0
|
O4'
|
A:DT7
|
4.9
|
0.0
|
1.0
|
C3'
|
A:DT1L
|
4.9
|
0.0
|
1.0
|
H4'
|
A:DT1L
|
4.9
|
0.0
|
1.0
|
|
Phosphorus binding site 8 out
of 22 in 136d
Go back to
Phosphorus Binding Sites List in 136d
Phosphorus binding site 8 out
of 22 in the Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 8 of Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P8
b:0.0
occ:1.00
|
P
|
A:DA8
|
0.0
|
0.0
|
1.0
|
OP2
|
A:DA8
|
1.5
|
0.0
|
1.0
|
OP1
|
A:DA8
|
1.5
|
0.0
|
1.0
|
O3'
|
A:DT5L
|
1.6
|
0.0
|
1.0
|
O5'
|
A:DA8
|
1.6
|
0.0
|
1.0
|
C5'
|
A:DA8
|
2.6
|
0.0
|
1.0
|
H5''
|
A:DA8
|
2.7
|
0.0
|
1.0
|
C3'
|
A:DT5L
|
2.7
|
0.0
|
1.0
|
H2''
|
A:DT5L
|
2.8
|
0.0
|
1.0
|
H5'
|
A:DA8
|
2.9
|
0.0
|
1.0
|
H3'
|
A:DT5L
|
2.9
|
0.0
|
1.0
|
C2'
|
A:DT5L
|
3.1
|
0.0
|
1.0
|
H3'
|
A:DA8
|
3.4
|
0.0
|
1.0
|
H1'
|
A:DT5L
|
3.9
|
0.0
|
1.0
|
H2'
|
A:DT5L
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DA8
|
4.0
|
0.0
|
1.0
|
C4'
|
A:DT5L
|
4.1
|
0.0
|
1.0
|
C1'
|
A:DT5L
|
4.2
|
0.0
|
1.0
|
H4'
|
A:DT5L
|
4.3
|
0.0
|
1.0
|
C3'
|
A:DA8
|
4.3
|
0.0
|
1.0
|
O4'
|
A:DA8
|
4.5
|
0.0
|
1.0
|
H4'
|
A:DA8
|
4.6
|
0.0
|
1.0
|
O4'
|
A:DT5L
|
4.7
|
0.0
|
1.0
|
H2'
|
A:DA8
|
4.8
|
0.0
|
1.0
|
H8
|
A:DA8
|
4.8
|
0.0
|
1.0
|
|
Phosphorus binding site 9 out
of 22 in 136d
Go back to
Phosphorus Binding Sites List in 136d
Phosphorus binding site 9 out
of 22 in the Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 9 of Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P9
b:0.0
occ:1.00
|
P
|
A:DG9
|
0.0
|
0.0
|
1.0
|
OP1
|
A:DG9
|
1.5
|
0.0
|
1.0
|
OP2
|
A:DG9
|
1.5
|
0.0
|
1.0
|
O3'
|
A:DA8
|
1.6
|
0.0
|
1.0
|
O5'
|
A:DG9
|
1.6
|
0.0
|
1.0
|
C3'
|
A:DA8
|
2.6
|
0.0
|
1.0
|
C5'
|
A:DG9
|
2.7
|
0.0
|
1.0
|
H5''
|
A:DG9
|
2.8
|
0.0
|
1.0
|
H2''
|
A:DA8
|
2.8
|
0.0
|
1.0
|
H5'
|
A:DG9
|
3.1
|
0.0
|
1.0
|
C2'
|
A:DA8
|
3.1
|
0.0
|
1.0
|
H3'
|
A:DA8
|
3.2
|
0.0
|
1.0
|
H3'
|
A:DG9
|
3.7
|
0.0
|
1.0
|
H2'
|
A:DA8
|
3.7
|
0.0
|
1.0
|
C4'
|
A:DA8
|
3.9
|
0.0
|
1.0
|
C4'
|
A:DG9
|
4.0
|
0.0
|
1.0
|
H1'
|
A:DA8
|
4.1
|
0.0
|
1.0
|
H4'
|
A:DA8
|
4.1
|
0.0
|
1.0
|
C1'
|
A:DA8
|
4.2
|
0.0
|
1.0
|
C3'
|
A:DG9
|
4.3
|
0.0
|
1.0
|
O4'
|
A:DG9
|
4.6
|
0.0
|
1.0
|
N7
|
A:DG19
|
4.7
|
0.0
|
1.0
|
H4'
|
A:DG9
|
4.7
|
0.0
|
1.0
|
O4'
|
A:DA8
|
4.7
|
0.0
|
1.0
|
H8
|
A:DG9
|
4.7
|
0.0
|
1.0
|
H5''
|
A:DA8
|
4.8
|
0.0
|
1.0
|
H8
|
A:DG19
|
4.9
|
0.0
|
1.0
|
C5'
|
A:DA8
|
5.0
|
0.0
|
1.0
|
|
Phosphorus binding site 10 out
of 22 in 136d
Go back to
Phosphorus Binding Sites List in 136d
Phosphorus binding site 10 out
of 22 in the Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 10 of Solution Structure of A Purine(Dot)Purine(Dot)Pyrimidine Dna Triplex Containing G(Dot)Gc and T(Dot)at Triples within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P10
b:0.0
occ:1.00
|
P
|
A:DG10
|
0.0
|
0.0
|
1.0
|
OP1
|
A:DG10
|
1.4
|
0.0
|
1.0
|
OP2
|
A:DG10
|
1.5
|
0.0
|
1.0
|
O3'
|
A:DG9
|
1.6
|
0.0
|
1.0
|
O5'
|
A:DG10
|
1.6
|
0.0
|
1.0
|
C5'
|
A:DG10
|
2.6
|
0.0
|
1.0
|
C3'
|
A:DG9
|
2.6
|
0.0
|
1.0
|
H5''
|
A:DG10
|
2.7
|
0.0
|
1.0
|
H3'
|
A:DG9
|
2.8
|
0.0
|
1.0
|
H2''
|
A:DG9
|
2.9
|
0.0
|
1.0
|
H5'
|
A:DG10
|
2.9
|
0.0
|
1.0
|
C2'
|
A:DG9
|
3.1
|
0.0
|
1.0
|
H2'
|
A:DG9
|
3.6
|
0.0
|
1.0
|
H3'
|
A:DG10
|
3.7
|
0.0
|
1.0
|
C4'
|
A:DG10
|
4.0
|
0.0
|
1.0
|
C4'
|
A:DG9
|
4.0
|
0.0
|
1.0
|
H71
|
A:DT18
|
4.2
|
0.0
|
1.0
|
C3'
|
A:DG10
|
4.4
|
0.0
|
1.0
|
H4'
|
A:DG9
|
4.5
|
0.0
|
1.0
|
C1'
|
A:DG9
|
4.5
|
0.0
|
1.0
|
H5''
|
A:DG9
|
4.7
|
0.0
|
1.0
|
H4'
|
A:DG10
|
4.7
|
0.0
|
1.0
|
O4'
|
A:DG10
|
4.7
|
0.0
|
1.0
|
H1'
|
A:DG9
|
4.8
|
0.0
|
1.0
|
O4'
|
A:DG9
|
4.8
|
0.0
|
1.0
|
C5'
|
A:DG9
|
4.9
|
0.0
|
1.0
|
H8
|
A:DG10
|
4.9
|
0.0
|
1.0
|
H2'
|
A:DG10
|
4.9
|
0.0
|
1.0
|
|
Reference:
I.Radhakrishnan,
D.J.Patel.
Solution Structure of A Purine.Purine.Pyrimidine Dna Triplex Containing G.Gc and T.at Triples. Structure V. 1 135 1993.
ISSN: ISSN 0969-2126
PubMed: 8069626
DOI: 10.1016/0969-2126(93)90028-F
Page generated: Fri Sep 25 11:22:29 2020
|