Phosphorus in PDB 121p: Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des C-Terminal Verkuerzten Menschlichen Krebsproteins P21-H-Ras
Protein crystallography data
The structure of Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des C-Terminal Verkuerzten Menschlichen Krebsproteins P21-H-Ras, PDB code: 121p
was solved by
U.Krengel,
K.Scheffzek,
A.Scherer,
W.Kabsch,
A.Wittinghofer,
E.F.Pai,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
N/A /
1.54
|
Space group
|
P 32 2 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
40.200,
40.200,
161.400,
90.00,
90.00,
120.00
|
R / Rfree (%)
|
19.5 /
n/a
|
Phosphorus Binding Sites:
The binding sites of Phosphorus atom in the Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des C-Terminal Verkuerzten Menschlichen Krebsproteins P21-H-Ras
(pdb code 121p). This binding sites where shown within
5.0 Angstroms radius around Phosphorus atom.
In total 3 binding sites of Phosphorus where determined in the
Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des C-Terminal Verkuerzten Menschlichen Krebsproteins P21-H-Ras, PDB code: 121p:
Jump to Phosphorus binding site number:
1;
2;
3;
Phosphorus binding site 1 out
of 3 in 121p
Go back to
Phosphorus Binding Sites List in 121p
Phosphorus binding site 1 out
of 3 in the Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des C-Terminal Verkuerzten Menschlichen Krebsproteins P21-H-Ras
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 1 of Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des C-Terminal Verkuerzten Menschlichen Krebsproteins P21-H-Ras within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P167
b:11.7
occ:1.00
|
PG
|
A:GCP167
|
0.0
|
11.7
|
1.0
|
O2G
|
A:GCP167
|
1.5
|
12.6
|
1.0
|
O1G
|
A:GCP167
|
1.5
|
13.3
|
1.0
|
O3G
|
A:GCP167
|
1.6
|
13.2
|
1.0
|
C3B
|
A:GCP167
|
1.7
|
10.1
|
1.0
|
PB
|
A:GCP167
|
3.0
|
12.0
|
1.0
|
MG
|
A:MG168
|
3.2
|
14.6
|
1.0
|
O2B
|
A:GCP167
|
3.5
|
9.3
|
1.0
|
O
|
A:HOH175
|
3.6
|
18.2
|
1.0
|
O1B
|
A:GCP167
|
3.7
|
9.3
|
1.0
|
O
|
A:HOH188
|
3.7
|
31.9
|
1.0
|
O
|
A:HOH172
|
3.8
|
13.8
|
1.0
|
NZ
|
A:LYS16
|
3.9
|
10.0
|
1.0
|
N
|
A:THR35
|
4.0
|
10.6
|
1.0
|
N
|
A:GLY13
|
4.1
|
14.7
|
1.0
|
N
|
A:GLY60
|
4.1
|
17.0
|
1.0
|
O
|
A:HOH173
|
4.2
|
10.9
|
1.0
|
O3A
|
A:GCP167
|
4.3
|
12.3
|
1.0
|
CA
|
A:PRO34
|
4.3
|
12.1
|
1.0
|
CE
|
A:LYS16
|
4.5
|
9.0
|
1.0
|
CA
|
A:GLY12
|
4.6
|
14.0
|
1.0
|
OG1
|
A:THR35
|
4.6
|
11.3
|
1.0
|
CB
|
A:THR35
|
4.7
|
12.2
|
1.0
|
C
|
A:PRO34
|
4.7
|
11.7
|
1.0
|
CA
|
A:GLY60
|
4.8
|
22.7
|
1.0
|
O2A
|
A:GCP167
|
4.9
|
11.4
|
1.0
|
O
|
A:THR58
|
4.9
|
16.0
|
1.0
|
CB
|
A:PRO34
|
4.9
|
11.6
|
1.0
|
C
|
A:GLY12
|
4.9
|
14.8
|
1.0
|
CA
|
A:GLY13
|
4.9
|
14.4
|
1.0
|
CA
|
A:THR35
|
4.9
|
11.9
|
1.0
|
O
|
A:HOH170
|
5.0
|
16.1
|
1.0
|
|
Phosphorus binding site 2 out
of 3 in 121p
Go back to
Phosphorus Binding Sites List in 121p
Phosphorus binding site 2 out
of 3 in the Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des C-Terminal Verkuerzten Menschlichen Krebsproteins P21-H-Ras
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 2 of Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des C-Terminal Verkuerzten Menschlichen Krebsproteins P21-H-Ras within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P167
b:12.0
occ:1.00
|
PB
|
A:GCP167
|
0.0
|
12.0
|
1.0
|
O2B
|
A:GCP167
|
1.5
|
9.3
|
1.0
|
O1B
|
A:GCP167
|
1.5
|
9.3
|
1.0
|
O3A
|
A:GCP167
|
1.6
|
12.3
|
1.0
|
C3B
|
A:GCP167
|
1.7
|
10.1
|
1.0
|
PA
|
A:GCP167
|
2.9
|
11.6
|
1.0
|
PG
|
A:GCP167
|
3.0
|
11.7
|
1.0
|
MG
|
A:MG168
|
3.3
|
14.6
|
1.0
|
O2A
|
A:GCP167
|
3.4
|
11.4
|
1.0
|
O2G
|
A:GCP167
|
3.5
|
12.6
|
1.0
|
O3G
|
A:GCP167
|
3.5
|
13.2
|
1.0
|
O1A
|
A:GCP167
|
3.5
|
12.2
|
1.0
|
O
|
A:HOH172
|
3.7
|
13.8
|
1.0
|
N
|
A:LYS16
|
3.7
|
9.1
|
1.0
|
N
|
A:GLY15
|
3.8
|
9.1
|
1.0
|
N
|
A:GLY13
|
3.9
|
14.7
|
1.0
|
NZ
|
A:LYS16
|
3.9
|
10.0
|
1.0
|
O5'
|
A:GCP167
|
4.0
|
10.9
|
1.0
|
CA
|
A:GLY13
|
4.0
|
14.4
|
1.0
|
CA
|
A:GLY15
|
4.2
|
9.0
|
1.0
|
N
|
A:SER17
|
4.2
|
9.8
|
1.0
|
O
|
A:HOH173
|
4.2
|
10.9
|
1.0
|
N
|
A:VAL14
|
4.2
|
11.2
|
1.0
|
O1G
|
A:GCP167
|
4.2
|
13.3
|
1.0
|
C
|
A:GLY13
|
4.3
|
11.5
|
1.0
|
C
|
A:GLY15
|
4.3
|
10.0
|
1.0
|
CB
|
A:LYS16
|
4.4
|
7.8
|
1.0
|
C5'
|
A:GCP167
|
4.4
|
11.2
|
1.0
|
CE
|
A:LYS16
|
4.5
|
9.0
|
1.0
|
CA
|
A:LYS16
|
4.6
|
8.9
|
1.0
|
OG
|
A:SER17
|
4.6
|
9.9
|
1.0
|
CG
|
A:LYS16
|
4.8
|
7.0
|
1.0
|
CB
|
A:SER17
|
4.8
|
10.7
|
1.0
|
C
|
A:VAL14
|
4.9
|
10.1
|
1.0
|
C
|
A:LYS16
|
4.9
|
9.5
|
1.0
|
O
|
A:GLY13
|
5.0
|
11.2
|
1.0
|
|
Phosphorus binding site 3 out
of 3 in 121p
Go back to
Phosphorus Binding Sites List in 121p
Phosphorus binding site 3 out
of 3 in the Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des C-Terminal Verkuerzten Menschlichen Krebsproteins P21-H-Ras
Mono view
Stereo pair view
|
A full contact list of Phosphorus with other atoms in the P binding
site number 3 of Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des C-Terminal Verkuerzten Menschlichen Krebsproteins P21-H-Ras within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:P167
b:11.6
occ:1.00
|
PA
|
A:GCP167
|
0.0
|
11.6
|
1.0
|
O2A
|
A:GCP167
|
1.5
|
11.4
|
1.0
|
O1A
|
A:GCP167
|
1.5
|
12.2
|
1.0
|
O5'
|
A:GCP167
|
1.6
|
10.9
|
1.0
|
O3A
|
A:GCP167
|
1.6
|
12.3
|
1.0
|
C5'
|
A:GCP167
|
2.7
|
11.2
|
1.0
|
PB
|
A:GCP167
|
2.9
|
12.0
|
1.0
|
O2B
|
A:GCP167
|
3.1
|
9.3
|
1.0
|
O
|
A:HOH172
|
3.6
|
13.8
|
1.0
|
C3B
|
A:GCP167
|
3.7
|
10.1
|
1.0
|
O
|
A:HOH186
|
3.8
|
24.8
|
1.0
|
CA
|
A:GLY15
|
3.9
|
9.0
|
1.0
|
C4'
|
A:GCP167
|
3.9
|
11.3
|
1.0
|
O1B
|
A:GCP167
|
3.9
|
9.3
|
1.0
|
O
|
A:HOH170
|
4.1
|
16.1
|
1.0
|
C3'
|
A:GCP167
|
4.2
|
14.2
|
1.0
|
N
|
A:GLY15
|
4.2
|
9.1
|
1.0
|
N
|
A:ALA18
|
4.3
|
10.2
|
1.0
|
CB
|
A:SER17
|
4.3
|
10.7
|
1.0
|
C2'
|
A:GCP167
|
4.3
|
14.8
|
1.0
|
C
|
A:GLY15
|
4.4
|
10.0
|
1.0
|
N
|
A:SER17
|
4.4
|
9.8
|
1.0
|
O4'
|
A:GCP167
|
4.5
|
12.3
|
1.0
|
MG
|
A:MG168
|
4.6
|
14.6
|
1.0
|
N
|
A:LYS16
|
4.7
|
9.1
|
1.0
|
CB
|
A:ALA18
|
4.7
|
10.4
|
1.0
|
C8
|
A:GCP167
|
4.7
|
12.8
|
1.0
|
CA
|
A:SER17
|
4.8
|
10.3
|
1.0
|
OG
|
A:SER17
|
4.9
|
9.9
|
1.0
|
C1'
|
A:GCP167
|
5.0
|
13.9
|
1.0
|
|
Reference:
U.Krengel,
U.Krengel,
K.Scheffzek,
A.Scherer,
W.Kabsch,
A.Wittinghofer,
E.F.Pai.
N/A N/A.
Page generated: Fri Sep 25 11:13:23 2020
|