Phosphorus in PDB 11bg: A Potential Allosteric Subsite Generated By Domain Swapping in Bovine Seminal Ribonuclease

Enzymatic activity of A Potential Allosteric Subsite Generated By Domain Swapping in Bovine Seminal Ribonuclease

All present enzymatic activity of A Potential Allosteric Subsite Generated By Domain Swapping in Bovine Seminal Ribonuclease:
3.1.27.5;

Protein crystallography data

The structure of A Potential Allosteric Subsite Generated By Domain Swapping in Bovine Seminal Ribonuclease, PDB code: 11bg was solved by L.Vitagliano, S.Adinolfi, F.Sica, A.Merlino, A.Zagari, L.Mazzarella, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 12.00 / 1.90
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 36.400, 66.700, 107.700, 90.00, 90.00, 90.00
R / Rfree (%) 18.9 / n/a

Phosphorus Binding Sites:

The binding sites of Phosphorus atom in the A Potential Allosteric Subsite Generated By Domain Swapping in Bovine Seminal Ribonuclease (pdb code 11bg). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 3 binding sites of Phosphorus where determined in the A Potential Allosteric Subsite Generated By Domain Swapping in Bovine Seminal Ribonuclease, PDB code: 11bg:
Jump to Phosphorus binding site number: 1; 2; 3;

Phosphorus binding site 1 out of 3 in 11bg

Go back to Phosphorus Binding Sites List in 11bg
Phosphorus binding site 1 out of 3 in the A Potential Allosteric Subsite Generated By Domain Swapping in Bovine Seminal Ribonuclease


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of A Potential Allosteric Subsite Generated By Domain Swapping in Bovine Seminal Ribonuclease within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P130

b:53.4
occ:1.00
P A:U2G130 0.0 53.4 1.0
O1P A:U2G130 1.5 52.5 1.0
O2P A:U2G130 1.5 53.3 1.0
O5B A:U2G130 1.6 49.7 1.0
O2D A:U2G130 1.6 56.4 1.0
C2D A:U2G130 2.6 60.4 1.0
C5B A:U2G130 2.7 44.2 1.0
OG A:SER123 3.4 22.4 1.0
C3B A:U2G130 3.4 37.9 1.0
C4B A:U2G130 3.6 39.4 1.0
C3D A:U2G130 3.6 61.8 1.0
O3D A:U2G130 3.7 61.5 1.0
O A:HOH295 3.7 23.0 1.0
N A:SER123 3.8 21.7 1.0
C1D A:U2G130 3.9 61.4 1.0
O3B A:U2G130 3.9 39.1 1.0
O A:SER123 4.0 22.5 1.0
O4B A:U2G130 4.2 35.8 1.0
C8G A:U2G130 4.3 23.6 1.0
N1U A:U2G130 4.4 61.4 1.0
CB A:SER123 4.5 21.2 1.0
CA A:ALA122 4.5 19.8 1.0
CA A:SER123 4.6 21.8 1.0
C A:ALA122 4.6 19.0 1.0
CB A:ALA122 4.7 18.7 1.0
C2B A:U2G130 4.7 36.4 1.0
C A:SER123 4.7 22.4 1.0
C1B A:U2G130 4.8 32.9 1.0
OD2 A:ASP83 4.9 21.0 1.0
C4D A:U2G130 4.9 62.9 1.0
N9G A:U2G130 4.9 26.7 1.0
NZ A:LYS104 5.0 34.0 1.0
O4D A:U2G130 5.0 63.2 1.0

Phosphorus binding site 2 out of 3 in 11bg

Go back to Phosphorus Binding Sites List in 11bg
Phosphorus binding site 2 out of 3 in the A Potential Allosteric Subsite Generated By Domain Swapping in Bovine Seminal Ribonuclease


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of A Potential Allosteric Subsite Generated By Domain Swapping in Bovine Seminal Ribonuclease within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P131

b:30.6
occ:0.62
P A:U2G131 0.0 30.6 0.6
O2P A:U2G131 1.5 30.9 0.6
O1P A:U2G131 1.5 31.4 0.6
O5B A:U2G131 1.6 30.1 0.6
O2D A:U2G131 1.6 31.0 0.6
C2D A:U2G131 2.6 32.1 0.6
C5B A:U2G131 2.6 29.2 0.6
C1D A:U2G131 3.7 32.0 0.6
C3D A:U2G131 3.8 33.0 0.6
C4B A:U2G131 3.9 28.3 0.6
O3D A:U2G131 4.0 33.3 0.6
N1U A:U2G131 4.1 32.7 0.6
O4B A:U2G131 4.1 26.8 0.6
C2U A:U2G131 4.5 32.6 0.6
O A:HOH318 4.6 33.2 1.0
O2U A:U2G131 4.6 32.2 0.6
C6U A:U2G131 4.6 32.9 0.6
O4D A:U2G131 4.9 32.7 0.6
C4D A:U2G131 5.0 33.3 0.6
C3B A:U2G131 5.0 28.4 0.6

Phosphorus binding site 3 out of 3 in 11bg

Go back to Phosphorus Binding Sites List in 11bg
Phosphorus binding site 3 out of 3 in the A Potential Allosteric Subsite Generated By Domain Swapping in Bovine Seminal Ribonuclease


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of A Potential Allosteric Subsite Generated By Domain Swapping in Bovine Seminal Ribonuclease within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P133

b:73.7
occ:1.00
P B:U2G133 0.0 73.7 1.0
O1P B:U2G133 1.5 73.5 1.0
O2P B:U2G133 1.5 73.7 1.0
O5B B:U2G133 1.6 70.0 1.0
O2D B:U2G133 1.6 74.0 1.0
C5B B:U2G133 2.7 63.0 1.0
OG B:SER123 3.4 23.4 1.0
C3B B:U2G133 3.6 55.7 1.0
C4B B:U2G133 3.6 57.4 1.0
N B:SER123 3.7 21.0 1.0
C8G B:U2G133 3.7 41.4 1.0
O B:HOH324 4.0 47.0 1.0
O B:HOH310 4.0 43.4 1.0
O B:SER123 4.0 22.4 1.0
O3B B:U2G133 4.1 56.1 1.0
O4B B:U2G133 4.3 53.6 1.0
CB B:SER123 4.4 21.0 1.0
NH1 B:ARG85 4.4 44.3 1.0
CA B:ALA122 4.5 19.5 1.0
OD2 B:ASP83 4.5 28.5 1.0
CA B:SER123 4.5 21.2 1.0
N9G B:U2G133 4.6 43.3 1.0
N7G B:U2G133 4.6 38.7 1.0
C B:ALA122 4.6 20.0 1.0
CB B:ALA122 4.6 18.5 1.0
C B:SER123 4.7 22.5 1.0
C1B B:U2G133 4.8 50.0 1.0
C2B B:U2G133 4.8 54.2 1.0

Reference:

L.Vitagliano, S.Adinolfi, F.Sica, A.Merlino, A.Zagari, L.Mazzarella. A Potential Allosteric Subsite Generated By Domain Swapping in Bovine Seminal Ribonuclease. J.Mol.Biol. V. 293 569 1999.
ISSN: ISSN 0022-2836
PubMed: 10543951
DOI: 10.1006/JMBI.1999.3158
Page generated: Fri Sep 25 11:13:01 2020

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