Phosphorus in PDB 11ba: Binding of A Substrate Analogue to A Domain Swapping Protein in the Complex of Bovine Seminal Ribonuclease with Uridylyl-2',5'-Adenosine

Enzymatic activity of Binding of A Substrate Analogue to A Domain Swapping Protein in the Complex of Bovine Seminal Ribonuclease with Uridylyl-2',5'-Adenosine

All present enzymatic activity of Binding of A Substrate Analogue to A Domain Swapping Protein in the Complex of Bovine Seminal Ribonuclease with Uridylyl-2',5'-Adenosine:
3.1.27.5;

Protein crystallography data

The structure of Binding of A Substrate Analogue to A Domain Swapping Protein in the Complex of Bovine Seminal Ribonuclease with Uridylyl-2',5'-Adenosine, PDB code: 11ba was solved by L.Vitagliano, S.Adinolfi, A.Riccio, F.Sica, A.Zagari, L.Mazzarella, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.06
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 49.450, 60.640, 50.750, 90.00, 117.35, 90.00
R / Rfree (%) 18.4 / n/a

Phosphorus Binding Sites:

The binding sites of Phosphorus atom in the Binding of A Substrate Analogue to A Domain Swapping Protein in the Complex of Bovine Seminal Ribonuclease with Uridylyl-2',5'-Adenosine (pdb code 11ba). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 2 binding sites of Phosphorus where determined in the Binding of A Substrate Analogue to A Domain Swapping Protein in the Complex of Bovine Seminal Ribonuclease with Uridylyl-2',5'-Adenosine, PDB code: 11ba:
Jump to Phosphorus binding site number: 1; 2;

Phosphorus binding site 1 out of 2 in 11ba

Go back to Phosphorus Binding Sites List in 11ba
Phosphorus binding site 1 out of 2 in the Binding of A Substrate Analogue to A Domain Swapping Protein in the Complex of Bovine Seminal Ribonuclease with Uridylyl-2',5'-Adenosine


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Binding of A Substrate Analogue to A Domain Swapping Protein in the Complex of Bovine Seminal Ribonuclease with Uridylyl-2',5'-Adenosine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P125

b:17.0
occ:1.00
P A:UPA125 0.0 17.0 1.0
O1P A:UPA125 1.5 17.1 1.0
O2P A:UPA125 1.5 18.0 1.0
O5B A:UPA125 1.5 16.5 1.0
O2D A:UPA125 1.5 15.8 1.0
C5B A:UPA125 2.6 16.5 1.0
C2D A:UPA125 2.6 14.6 1.0
O3D A:UPA125 3.3 14.4 1.0
C3D A:UPA125 3.6 14.3 1.0
NZ A:LYS41 3.7 17.5 1.0
NE2 B:HIS12 3.7 7.0 1.0
C1D A:UPA125 3.7 13.8 1.0
C4B A:UPA125 3.8 16.9 1.0
ND1 A:HIS119 3.8 13.4 1.0
O A:HOH160 4.0 24.4 1.0
O A:HOH174 4.0 33.3 1.0
O4B A:UPA125 4.1 17.5 1.0
N A:PHE120 4.2 14.4 1.0
C3B A:UPA125 4.3 17.5 1.0
C4D A:UPA125 4.3 14.8 1.0
CE1 B:HIS12 4.3 4.4 1.0
NE2 B:GLN11 4.5 22.1 1.0
CE A:LYS41 4.5 18.1 1.0
O A:PHE120 4.5 16.2 1.0
O4D A:UPA125 4.6 14.6 1.0
CA A:HIS119 4.6 14.4 1.0
CE1 A:HIS119 4.6 13.7 1.0
CG A:HIS119 4.8 13.3 1.0
CD2 B:HIS12 4.8 5.7 1.0
N1U A:UPA125 4.9 13.3 1.0
CB A:HIS119 4.9 13.4 1.0
C A:HIS119 5.0 15.3 1.0
O2U A:UPA125 5.0 12.3 1.0

Phosphorus binding site 2 out of 2 in 11ba

Go back to Phosphorus Binding Sites List in 11ba
Phosphorus binding site 2 out of 2 in the Binding of A Substrate Analogue to A Domain Swapping Protein in the Complex of Bovine Seminal Ribonuclease with Uridylyl-2',5'-Adenosine


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Binding of A Substrate Analogue to A Domain Swapping Protein in the Complex of Bovine Seminal Ribonuclease with Uridylyl-2',5'-Adenosine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P126

b:15.1
occ:1.00
P B:UPA126 0.0 15.1 1.0
O1P B:UPA126 1.5 15.9 1.0
O5B B:UPA126 1.5 15.6 1.0
O2P B:UPA126 1.5 15.3 1.0
O2D B:UPA126 1.6 14.9 1.0
C5B B:UPA126 2.6 16.5 1.0
C2D B:UPA126 2.7 15.1 1.0
O3D B:UPA126 3.4 14.3 1.0
NE2 A:HIS12 3.6 9.3 1.0
C3D B:UPA126 3.6 15.3 1.0
C1D B:UPA126 3.8 14.8 1.0
NZ B:LYS41 3.8 20.8 1.0
C4B B:UPA126 3.8 17.1 1.0
O A:HOH143 3.9 19.2 1.0
ND1 B:HIS119 4.1 14.7 1.0
CE1 A:HIS12 4.1 8.4 1.0
N B:PHE120 4.1 12.8 1.0
O4B B:UPA126 4.1 17.2 1.0
C4D B:UPA126 4.2 15.9 1.0
NE2 A:GLN11 4.2 18.8 1.0
C3B B:UPA126 4.4 17.6 1.0
CE B:LYS41 4.5 19.8 1.0
O B:PHE120 4.5 11.8 1.0
O4D B:UPA126 4.6 15.8 1.0
CA B:HIS119 4.6 12.6 1.0
CD2 A:HIS12 4.7 9.1 1.0
CG B:HIS119 4.8 14.8 1.0
CE1 B:HIS119 4.8 15.7 1.0
C B:HIS119 4.9 13.2 1.0
CB B:HIS119 4.9 14.0 1.0
N1U B:UPA126 5.0 14.0 1.0
O2U B:UPA126 5.0 14.2 1.0

Reference:

L.Vitagliano, S.Adinolfi, A.Riccio, F.Sica, A.Zagari, L.Mazzarella. Binding of A Substrate Analog to A Domain Swapping Protein: X-Ray Structure of the Complex of Bovine Seminal Ribonuclease with Uridylyl(2',5')Adenosine. Protein Sci. V. 7 1691 1998.
ISSN: ISSN 0961-8368
PubMed: 10082366
DOI: 10.1002/PRO.5560070804
Page generated: Fri Sep 25 11:12:44 2020

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