Phosphorus in PDB 11ba: Binding of A Substrate Analogue to A Domain Swapping Protein in the Complex of Bovine Seminal Ribonuclease with Uridylyl-2',5'-Adenosine

Enzymatic activity of Binding of A Substrate Analogue to A Domain Swapping Protein in the Complex of Bovine Seminal Ribonuclease with Uridylyl-2',5'-Adenosine

All present enzymatic activity of Binding of A Substrate Analogue to A Domain Swapping Protein in the Complex of Bovine Seminal Ribonuclease with Uridylyl-2',5'-Adenosine:
3.1.27.5;

Protein crystallography data

The structure of Binding of A Substrate Analogue to A Domain Swapping Protein in the Complex of Bovine Seminal Ribonuclease with Uridylyl-2',5'-Adenosine, PDB code: 11ba was solved by L.Vitagliano, S.Adinolfi, A.Riccio, F.Sica, A.Zagari, L.Mazzarella, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 10.00 / 2.06
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 49.450, 60.640, 50.750, 90.00, 117.35, 90.00
R / Rfree (%) 18.4 / n/a

Phosphorus Binding Sites:

The binding sites of Phosphorus atom in the Binding of A Substrate Analogue to A Domain Swapping Protein in the Complex of Bovine Seminal Ribonuclease with Uridylyl-2',5'-Adenosine (pdb code 11ba). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 2 binding sites of Phosphorus where determined in the Binding of A Substrate Analogue to A Domain Swapping Protein in the Complex of Bovine Seminal Ribonuclease with Uridylyl-2',5'-Adenosine, PDB code: 11ba:
Jump to Phosphorus binding site number: 1; 2;

Phosphorus binding site 1 out of 2 in 11ba

Go back to Phosphorus Binding Sites List in 11ba
Phosphorus binding site 1 out of 2 in the Binding of A Substrate Analogue to A Domain Swapping Protein in the Complex of Bovine Seminal Ribonuclease with Uridylyl-2',5'-Adenosine


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of Binding of A Substrate Analogue to A Domain Swapping Protein in the Complex of Bovine Seminal Ribonuclease with Uridylyl-2',5'-Adenosine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P125

b:17.0
occ:1.00
P A:UPA125 0.0 17.0 1.0
O1P A:UPA125 1.5 17.1 1.0
O2P A:UPA125 1.5 18.0 1.0
O5B A:UPA125 1.5 16.5 1.0
O2D A:UPA125 1.5 15.8 1.0
C5B A:UPA125 2.6 16.5 1.0
C2D A:UPA125 2.6 14.6 1.0
O3D A:UPA125 3.3 14.4 1.0
C3D A:UPA125 3.6 14.3 1.0
NZ A:LYS41 3.7 17.5 1.0
NE2 B:HIS12 3.7 7.0 1.0
C1D A:UPA125 3.7 13.8 1.0
C4B A:UPA125 3.8 16.9 1.0
ND1 A:HIS119 3.8 13.4 1.0
O A:HOH160 4.0 24.4 1.0
O A:HOH174 4.0 33.3 1.0
O4B A:UPA125 4.1 17.5 1.0
N A:PHE120 4.2 14.4 1.0
C3B A:UPA125 4.3 17.5 1.0
C4D A:UPA125 4.3 14.8 1.0
CE1 B:HIS12 4.3 4.4 1.0
NE2 B:GLN11 4.5 22.1 1.0
CE A:LYS41 4.5 18.1 1.0
O A:PHE120 4.5 16.2 1.0
O4D A:UPA125 4.6 14.6 1.0
CA A:HIS119 4.6 14.4 1.0
CE1 A:HIS119 4.6 13.7 1.0
CG A:HIS119 4.8 13.3 1.0
CD2 B:HIS12 4.8 5.7 1.0
N1U A:UPA125 4.9 13.3 1.0
CB A:HIS119 4.9 13.4 1.0
C A:HIS119 5.0 15.3 1.0
O2U A:UPA125 5.0 12.3 1.0

Phosphorus binding site 2 out of 2 in 11ba

Go back to Phosphorus Binding Sites List in 11ba
Phosphorus binding site 2 out of 2 in the Binding of A Substrate Analogue to A Domain Swapping Protein in the Complex of Bovine Seminal Ribonuclease with Uridylyl-2',5'-Adenosine


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of Binding of A Substrate Analogue to A Domain Swapping Protein in the Complex of Bovine Seminal Ribonuclease with Uridylyl-2',5'-Adenosine within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P126

b:15.1
occ:1.00
P B:UPA126 0.0 15.1 1.0
O1P B:UPA126 1.5 15.9 1.0
O5B B:UPA126 1.5 15.6 1.0
O2P B:UPA126 1.5 15.3 1.0
O2D B:UPA126 1.6 14.9 1.0
C5B B:UPA126 2.6 16.5 1.0
C2D B:UPA126 2.7 15.1 1.0
O3D B:UPA126 3.4 14.3 1.0
NE2 A:HIS12 3.6 9.3 1.0
C3D B:UPA126 3.6 15.3 1.0
C1D B:UPA126 3.8 14.8 1.0
NZ B:LYS41 3.8 20.8 1.0
C4B B:UPA126 3.8 17.1 1.0
O A:HOH143 3.9 19.2 1.0
ND1 B:HIS119 4.1 14.7 1.0
CE1 A:HIS12 4.1 8.4 1.0
N B:PHE120 4.1 12.8 1.0
O4B B:UPA126 4.1 17.2 1.0
C4D B:UPA126 4.2 15.9 1.0
NE2 A:GLN11 4.2 18.8 1.0
C3B B:UPA126 4.4 17.6 1.0
CE B:LYS41 4.5 19.8 1.0
O B:PHE120 4.5 11.8 1.0
O4D B:UPA126 4.6 15.8 1.0
CA B:HIS119 4.6 12.6 1.0
CD2 A:HIS12 4.7 9.1 1.0
CG B:HIS119 4.8 14.8 1.0
CE1 B:HIS119 4.8 15.7 1.0
C B:HIS119 4.9 13.2 1.0
CB B:HIS119 4.9 14.0 1.0
N1U B:UPA126 5.0 14.0 1.0
O2U B:UPA126 5.0 14.2 1.0

Reference:

L.Vitagliano, S.Adinolfi, A.Riccio, F.Sica, A.Zagari, L.Mazzarella. Binding of A Substrate Analog to A Domain Swapping Protein: X-Ray Structure of the Complex of Bovine Seminal Ribonuclease with Uridylyl(2',5')Adenosine. Protein Sci. V. 7 1691 1998.
ISSN: ISSN 0961-8368
PubMed: 10082366
DOI: 10.1002/PRO.5560070804
Page generated: Fri Sep 25 11:12:44 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy