Phosphorus in PDB 108d: The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy

Phosphorus Binding Sites:

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>>> Page 1 <<< Page 2, Binding sites: 11 - 14;

Binding sites:

The binding sites of Phosphorus atom in the The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy (pdb code 108d). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 14 binding sites of Phosphorus where determined in the The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy, PDB code: 108d:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Phosphorus binding site 1 out of 14 in 108d

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Phosphorus binding site 1 out of 14 in the The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P2

b:0.0
occ:1.00
P A:DG2 0.0 0.0 1.0
OP1 A:DG2 1.5 0.0 1.0
OP2 A:DG2 1.5 0.0 1.0
O5' A:DG2 1.6 0.0 1.0
O3' A:DC1 1.6 0.0 1.0
C5' A:DG2 2.6 0.0 1.0
C3' A:DC1 2.7 0.0 1.0
H5'' A:DG2 2.7 0.0 1.0
H3' A:DC1 2.8 0.0 1.0
H2'' A:DC1 3.0 0.0 1.0
H5' A:DG2 3.1 0.0 1.0
C2' A:DC1 3.3 0.0 1.0
H3' A:DG2 3.6 0.0 1.0
H2' A:DG2 3.9 0.0 1.0
C4' A:DG2 3.9 0.0 1.0
C4' A:DC1 3.9 0.0 1.0
H2' A:DC1 4.0 0.0 1.0
H4' A:DC1 4.0 0.0 1.0
C3' A:DG2 4.2 0.0 1.0
H1' A:DC1 4.3 0.0 1.0
C1' A:DC1 4.4 0.0 1.0
C2' A:DG2 4.6 0.0 1.0
H4' A:DG2 4.6 0.0 1.0
O4' A:DG2 4.7 0.0 1.0
H8 A:DG2 4.8 0.0 1.0
H5' A:DC1 4.8 0.0 1.0
O4' A:DC1 4.8 0.0 1.0
C5' A:DC1 5.0 0.0 1.0

Phosphorus binding site 2 out of 14 in 108d

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Phosphorus binding site 2 out of 14 in the The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P3

b:0.0
occ:1.00
P A:DC3 0.0 0.0 1.0
OP2 A:DC3 1.5 0.0 1.0
OP1 A:DC3 1.5 0.0 1.0
O5' A:DC3 1.6 0.0 1.0
O3' A:DG2 1.6 0.0 1.0
C5' A:DC3 2.6 0.0 1.0
C3' A:DG2 2.7 0.0 1.0
H2'' A:DG2 2.9 0.0 1.0
H5' A:DC3 2.9 0.0 1.0
H5'' A:DC3 2.9 0.0 1.0
H3' A:DG2 2.9 0.0 1.0
C2' A:DG2 3.2 0.0 1.0
H1' A:DG2 3.6 0.0 1.0
H3' A:DC3 3.9 0.0 1.0
C4' A:DG2 4.0 0.0 1.0
C4' A:DC3 4.0 0.0 1.0
C1' A:DG2 4.0 0.0 1.0
H4' A:DG2 4.1 0.0 1.0
H2' A:DG2 4.1 0.0 1.0
O4' A:DC3 4.4 0.0 1.0
C3' A:DC3 4.5 0.0 1.0
O4' A:DG2 4.6 0.0 1.0
H6 A:DC3 4.7 0.0 1.0
H4' A:DC3 4.8 0.0 1.0

Phosphorus binding site 3 out of 14 in 108d

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Phosphorus binding site 3 out of 14 in the The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P4

b:0.0
occ:1.00
P A:DT4 0.0 0.0 1.0
OP1 A:DT4 1.5 0.0 1.0
OP2 A:DT4 1.5 0.0 1.0
O5' A:DT4 1.6 0.0 1.0
O3' A:DC3 1.6 0.0 1.0
C5' A:DT4 2.6 0.0 1.0
C3' A:DC3 2.7 0.0 1.0
H3' A:DC3 2.8 0.0 1.0
H5' A:DT4 2.9 0.0 1.0
H5'' A:DT4 2.9 0.0 1.0
H2'' A:DC3 3.3 0.0 1.0
C2' A:DC3 3.4 0.0 1.0
H1 A:TOT9 3.7 0.0 1.0
H2' A:DC3 3.8 0.0 1.0
C4' A:DT4 4.0 0.0 1.0
C4' A:DC3 4.0 0.0 1.0
H4' A:DC3 4.2 0.0 1.0
H4' A:DT4 4.2 0.0 1.0
H2 A:TOT9 4.3 0.0 1.0
O4' A:DT4 4.4 0.0 1.0
C1 A:TOT9 4.4 0.0 1.0
C1' A:DC3 4.7 0.0 1.0
H5'' A:DC3 4.7 0.0 1.0
C2 A:TOT9 4.7 0.0 1.0
H1' A:DC3 4.8 0.0 1.0
C5' A:DC3 4.8 0.0 1.0
O4' A:DC3 5.0 0.0 1.0

Phosphorus binding site 4 out of 14 in 108d

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Phosphorus binding site 4 out of 14 in the The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P5

b:0.0
occ:1.00
P A:DA5 0.0 0.0 1.0
OP1 A:DA5 1.5 0.0 1.0
OP2 A:DA5 1.5 0.0 1.0
O3' A:DT4 1.6 0.0 1.0
O5' A:DA5 1.6 0.0 1.0
C5' A:DA5 2.6 0.0 1.0
C3' A:DT4 2.7 0.0 1.0
H5'' A:DA5 2.8 0.0 1.0
H2'' A:DT4 2.9 0.0 1.0
H3' A:DT4 2.9 0.0 1.0
H5' A:DA5 3.0 0.0 1.0
C2' A:DT4 3.3 0.0 1.0
H2' A:DA5 3.7 0.0 1.0
H3' A:DA5 3.8 0.0 1.0
H1' A:DT4 3.9 0.0 1.0
C4' A:DT4 4.0 0.0 1.0
C4' A:DA5 4.0 0.0 1.0
H2' A:DT4 4.0 0.0 1.0
H4' A:DT4 4.1 0.0 1.0
C1' A:DT4 4.2 0.0 1.0
C3' A:DA5 4.3 0.0 1.0
C2' A:DA5 4.5 0.0 1.0
O4' A:DA5 4.6 0.0 1.0
O4' A:DT4 4.7 0.0 1.0
H4' A:DA5 4.8 0.0 1.0
H5' A:DT4 4.8 0.0 1.0
H8 A:DA5 5.0 0.0 1.0

Phosphorus binding site 5 out of 14 in 108d

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Phosphorus binding site 5 out of 14 in the The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P6

b:0.0
occ:1.00
P A:DG6 0.0 0.0 1.0
OP2 A:DG6 1.5 0.0 1.0
OP1 A:DG6 1.5 0.0 1.0
O5' A:DG6 1.6 0.0 1.0
O3' A:DA5 1.6 0.0 1.0
C5' A:DG6 2.6 0.0 1.0
H5'' A:DG6 2.6 0.0 1.0
C3' A:DA5 2.7 0.0 1.0
H5' A:DG6 2.9 0.0 1.0
H3' A:DA5 2.9 0.0 1.0
H4' A:DA5 3.1 0.0 1.0
C4' A:DA5 3.4 0.0 1.0
H542 A:TOT9 3.9 0.0 1.0
C2' A:DA5 4.0 0.0 1.0
H5'' A:DA5 4.0 0.0 1.0
C4' A:DG6 4.0 0.0 1.0
H2'' A:DA5 4.0 0.0 1.0
H3' A:DG6 4.1 0.0 1.0
H1' A:DA5 4.2 0.0 1.0
H4' A:DG6 4.2 0.0 1.0
H581 A:TOT9 4.3 0.0 1.0
C5' A:DA5 4.3 0.0 1.0
O4' A:DA5 4.4 0.0 1.0
H521 A:TOT9 4.5 0.0 1.0
H582 A:TOT9 4.5 0.0 1.0
C1' A:DA5 4.5 0.0 1.0
H541 A:TOT9 4.5 0.0 1.0
C3' A:DG6 4.6 0.0 1.0
C54 A:TOT9 4.7 0.0 1.0
H2' A:DA5 4.8 0.0 1.0
H2' A:DG6 4.8 0.0 1.0
C58 A:TOT9 4.9 0.0 1.0
O4' A:DG6 4.9 0.0 1.0

Phosphorus binding site 6 out of 14 in 108d

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Phosphorus binding site 6 out of 14 in the The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P7

b:0.0
occ:1.00
P A:DC7 0.0 0.0 1.0
OP2 A:DC7 1.5 0.0 1.0
OP1 A:DC7 1.5 0.0 1.0
O5' A:DC7 1.6 0.0 1.0
O3' A:DG6 1.6 0.0 1.0
C5' A:DC7 2.6 0.0 1.0
C3' A:DG6 2.7 0.0 1.0
H5'' A:DC7 2.9 0.0 1.0
H5' A:DC7 2.9 0.0 1.0
H2'' A:DG6 3.0 0.0 1.0
C2' A:DG6 3.2 0.0 1.0
H3' A:DG6 3.3 0.0 1.0
H1' A:DG6 3.3 0.0 1.0
C1' A:DG6 3.8 0.0 1.0
C4' A:DG6 3.8 0.0 1.0
H2' A:DC7 3.8 0.0 1.0
H4' A:DG6 3.9 0.0 1.0
C4' A:DC7 4.0 0.0 1.0
H3' A:DC7 4.1 0.0 1.0
H2' A:DG6 4.2 0.0 1.0
O4' A:DG6 4.2 0.0 1.0
O4' A:DC7 4.3 0.0 1.0
H6 A:DC7 4.5 0.0 1.0
C3' A:DC7 4.5 0.0 1.0
C2' A:DC7 4.6 0.0 1.0
H4' A:DC7 4.8 0.0 1.0

Phosphorus binding site 7 out of 14 in 108d

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Phosphorus binding site 7 out of 14 in the The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 7 of The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
A:P8

b:0.0
occ:1.00
P A:DG8 0.0 0.0 1.0
OP2 A:DG8 1.5 0.0 1.0
OP1 A:DG8 1.5 0.0 1.0
O5' A:DG8 1.6 0.0 1.0
O3' A:DC7 1.6 0.0 1.0
C5' A:DG8 2.6 0.0 1.0
H5' A:DG8 2.7 0.0 1.0
C3' A:DC7 2.7 0.0 1.0
H3' A:DC7 2.9 0.0 1.0
H2'' A:DC7 3.1 0.0 1.0
C2' A:DC7 3.4 0.0 1.0
H5'' A:DG8 3.4 0.0 1.0
H3' A:DG8 3.6 0.0 1.0
H1' A:DC7 3.7 0.0 1.0
C4' A:DG8 3.8 0.0 1.0
C4' A:DC7 4.0 0.0 1.0
C3' A:DG8 4.0 0.0 1.0
H4' A:DC7 4.1 0.0 1.0
C1' A:DC7 4.1 0.0 1.0
H2' A:DC7 4.2 0.0 1.0
O3' A:DG8 4.2 0.0 1.0
H4' A:DG8 4.3 0.0 1.0
O4' A:DC7 4.7 0.0 1.0
O4' A:DG8 4.7 0.0 1.0
HO3' A:DG8 4.8 0.0 1.0

Phosphorus binding site 8 out of 14 in 108d

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Phosphorus binding site 8 out of 14 in the The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy


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Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 8 of The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P2

b:0.0
occ:1.00
P B:DG2 0.0 0.0 1.0
OP2 B:DG2 1.5 0.0 1.0
OP1 B:DG2 1.5 0.0 1.0
O5' B:DG2 1.6 0.0 1.0
O3' B:DC1 1.6 0.0 1.0
C5' B:DG2 2.6 0.0 1.0
C3' B:DC1 2.7 0.0 1.0
H5'' B:DG2 2.7 0.0 1.0
H3' B:DC1 2.9 0.0 1.0
H2'' B:DC1 3.0 0.0 1.0
H5' B:DG2 3.1 0.0 1.0
C2' B:DC1 3.3 0.0 1.0
H3' B:DG2 3.6 0.0 1.0
H2' B:DG2 3.6 0.0 1.0
C4' B:DG2 3.9 0.0 1.0
C4' B:DC1 3.9 0.0 1.0
H2' B:DC1 4.0 0.0 1.0
H4' B:DC1 4.0 0.0 1.0
H8 B:DG2 4.1 0.0 1.0
C3' B:DG2 4.1 0.0 1.0
H1' B:DC1 4.2 0.0 1.0
C1' B:DC1 4.3 0.0 1.0
C2' B:DG2 4.4 0.0 1.0
O4' B:DG2 4.6 0.0 1.0
H4' B:DG2 4.6 0.0 1.0
H5' B:DC1 4.8 0.0 1.0
O4' B:DC1 4.8 0.0 1.0
C5' B:DC1 5.0 0.0 1.0

Phosphorus binding site 9 out of 14 in 108d

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Phosphorus binding site 9 out of 14 in the The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 9 of The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P3

b:0.0
occ:1.00
P B:DC3 0.0 0.0 1.0
OP2 B:DC3 1.5 0.0 1.0
OP1 B:DC3 1.5 0.0 1.0
O5' B:DC3 1.6 0.0 1.0
O3' B:DG2 1.6 0.0 1.0
C5' B:DC3 2.6 0.0 1.0
C3' B:DG2 2.7 0.0 1.0
H2'' B:DG2 2.8 0.0 1.0
H5' B:DC3 2.9 0.0 1.0
H5'' B:DC3 2.9 0.0 1.0
H3' B:DG2 3.0 0.0 1.0
C2' B:DG2 3.2 0.0 1.0
H1' B:DG2 3.6 0.0 1.0
H3' B:DC3 3.9 0.0 1.0
C4' B:DG2 4.0 0.0 1.0
C4' B:DC3 4.0 0.0 1.0
C1' B:DG2 4.0 0.0 1.0
H4' B:DG2 4.1 0.0 1.0
H2' B:DG2 4.1 0.0 1.0
O4' B:DC3 4.4 0.0 1.0
C3' B:DC3 4.5 0.0 1.0
O4' B:DG2 4.5 0.0 1.0
H6 B:DC3 4.7 0.0 1.0
H4' B:DC3 4.8 0.0 1.0

Phosphorus binding site 10 out of 14 in 108d

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Phosphorus binding site 10 out of 14 in the The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 10 of The Solution Structure of A Dna Complex with the Fluorescent Bis Intercalator Toto Determined By uc(Nmr) Spectroscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
B:P4

b:0.0
occ:1.00
P B:DT4 0.0 0.0 1.0
OP1 B:DT4 1.5 0.0 1.0
OP2 B:DT4 1.5 0.0 1.0
O5' B:DT4 1.6 0.0 1.0
O3' B:DC3 1.6 0.0 1.0
C5' B:DT4 2.6 0.0 1.0
C3' B:DC3 2.7 0.0 1.0
H3' B:DC3 2.8 0.0 1.0
H5' B:DT4 2.9 0.0 1.0
H5'' B:DT4 2.9 0.0 1.0
H2'' B:DC3 3.3 0.0 1.0
C2' B:DC3 3.4 0.0 1.0
H31 A:TOT9 3.6 0.0 1.0
H2' B:DC3 3.8 0.0 1.0
C4' B:DT4 4.0 0.0 1.0
C4' B:DC3 4.0 0.0 1.0
H4' B:DC3 4.2 0.0 1.0
H4' B:DT4 4.2 0.0 1.0
H32 A:TOT9 4.3 0.0 1.0
O4' B:DT4 4.4 0.0 1.0
C31 A:TOT9 4.4 0.0 1.0
C1' B:DC3 4.6 0.0 1.0
C32 A:TOT9 4.7 0.0 1.0
H5'' B:DC3 4.7 0.0 1.0
H1' B:DC3 4.7 0.0 1.0
C5' B:DC3 4.9 0.0 1.0
O4' B:DC3 5.0 0.0 1.0

Reference:

H.P.Spielmann, D.E.Wemmer, J.P.Jacobsen. Solution Structure of A Dna Complex with the Fluorescent Bis-Intercalator Toto Determined By uc(Nmr) Spectroscopy. Biochemistry V. 34 8542 1995.
ISSN: ISSN 0006-2960
PubMed: 7612596
DOI: 10.1021/BI00027A004
Page generated: Fri Sep 25 11:05:46 2020

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