Phosphorus in PDB 103d: The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 22;

Binding sites:

The binding sites of Phosphorus atom in the The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs (pdb code 103d). This binding sites where shown within 5.0 Angstroms radius around Phosphorus atom.
In total 22 binding sites of Phosphorus where determined in the The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs, PDB code: 103d:
Jump to Phosphorus binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Phosphorus binding site 1 out of 22 in the The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 1 of The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs within 5.0Å range: probe atom residue distance (Å) B Occ A:P2 b:0.0 occ:1.00 P A:DT2 0.0 0.0 1.0 OP1 A:DT2 1.5 0.0 1.0 OP2 A:DT2 1.5 0.0 1.0 O5' A:DT2 1.6 0.0 1.0 O3' A:DG1 1.6 0.0 1.0 C5' A:DT2 2.6 0.0 1.0 C3' A:DG1 2.7 0.0 1.0 H5' A:DT2 2.9 0.0 1.0 H3' A:DG1 2.9 0.0 1.0 H5'' A:DT2 2.9 0.0 1.0 H2'' A:DG1 2.9 0.0 1.0 C2' A:DG1 3.3 0.0 1.0 H1' A:DG1 3.9 0.0 1.0 C4' A:DG1 4.0 0.0 1.0 C4' A:DT2 4.0 0.0 1.0 H4' A:DG1 4.0 0.0 1.0 H2' A:DT2 4.1 0.0 1.0 H2' A:DG1 4.1 0.0 1.0 H6 A:DT2 4.1 0.0 1.0 H3' A:DT2 4.1 0.0 1.0 C1' A:DG1 4.2 0.0 1.0 O4' A:DT2 4.3 0.0 1.0 C3' A:DT2 4.5 0.0 1.0 O4' A:DG1 4.7 0.0 1.0 H4' A:DT2 4.8 0.0 1.0 C2' A:DT2 4.8 0.0 1.0

Phosphorus binding site 2 out of 22 in the The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 2 of The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs within 5.0Å range: probe atom residue distance (Å) B Occ A:P3 b:0.0 occ:1.00 P A:DG3 0.0 0.0 1.0 OP2 A:DG3 1.5 0.0 1.0 OP1 A:DG3 1.5 0.0 1.0 O5' A:DG3 1.6 0.0 1.0 O3' A:DT2 1.6 0.0 1.0 C5' A:DG3 2.6 0.0 1.0 C3' A:DT2 2.7 0.0 1.0 H5' A:DG3 2.9 0.0 1.0 H2'' A:DT2 2.9 0.0 1.0 H3' A:DT2 2.9 0.0 1.0 H5'' A:DG3 2.9 0.0 1.0 C2' A:DT2 3.3 0.0 1.0 H1' A:DT2 3.7 0.0 1.0 H2' A:DG3 3.9 0.0 1.0 C4' A:DG3 4.0 0.0 1.0 C4' A:DT2 4.0 0.0 1.0 H4' A:DT2 4.0 0.0 1.0 C1' A:DT2 4.1 0.0 1.0 H3' A:DG3 4.1 0.0 1.0 H2' A:DT2 4.1 0.0 1.0 O4' A:DG3 4.3 0.0 1.0 C3' A:DG3 4.5 0.0 1.0 H8 A:DG3 4.6 0.0 1.0 O4' A:DT2 4.7 0.0 1.0 C2' A:DG3 4.7 0.0 1.0 H4' A:DG3 4.8 0.0 1.0 H5'' A:DT2 5.0 0.0 1.0

Phosphorus binding site 3 out of 22 in the The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 3 of The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs within 5.0Å range: probe atom residue distance (Å) B Occ A:P4 b:0.0 occ:1.00 P A:DG4 0.0 0.0 1.0 OP2 A:DG4 1.5 0.0 1.0 OP1 A:DG4 1.5 0.0 1.0 O5' A:DG4 1.6 0.0 1.0 O3' A:DG3 1.6 0.0 1.0 C5' A:DG4 2.6 0.0 1.0 C3' A:DG3 2.7 0.0 1.0 H5' A:DG4 2.8 0.0 1.0 H3' A:DG3 2.9 0.0 1.0 H5'' A:DG4 3.1 0.0 1.0 H2'' A:DG3 3.1 0.0 1.0 H8 A:DG4 3.4 0.0 1.0 C2' A:DG3 3.4 0.0 1.0 H1' A:DG3 3.9 0.0 1.0 C4' A:DG4 3.9 0.0 1.0 C4' A:DG3 3.9 0.0 1.0 H4' A:DG3 3.9 0.0 1.0 H3' A:DG4 4.0 0.0 1.0 C1' A:DG3 4.2 0.0 1.0 H2' A:DG3 4.2 0.0 1.0 O4' A:DG4 4.2 0.0 1.0 C8 A:DG4 4.4 0.0 1.0 C3' A:DG4 4.5 0.0 1.0 O4' A:DG3 4.7 0.0 1.0 H4' A:DG4 4.8 0.0 1.0 H5'' A:DG3 4.9 0.0 1.0 H21 B:DG21 5.0 0.0 1.0 N1 B:DA22 5.0 0.0 1.0

Phosphorus binding site 4 out of 22 in the The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 4 of The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs within 5.0Å range: probe atom residue distance (Å) B Occ A:P5 b:0.0 occ:1.00 P A:DA5 0.0 0.0 1.0 OP1 A:DA5 1.5 0.0 1.0 OP2 A:DA5 1.5 0.0 1.0 O5' A:DA5 1.6 0.0 1.0 O3' A:DG4 1.6 0.0 1.0 C5' A:DA5 2.6 0.0 1.0 C3' A:DG4 2.7 0.0 1.0 H5'' A:DA5 2.8 0.0 1.0 H3' A:DG4 2.9 0.0 1.0 H5' A:DA5 3.1 0.0 1.0 H22 B:DG21 3.2 0.0 1.0 C2' A:DG4 3.4 0.0 1.0 H2' A:DG4 3.4 0.0 1.0 H2' A:DA5 3.4 0.0 1.0 H2'' A:DG4 3.4 0.0 1.0 H8 A:DA5 3.5 0.0 1.0 C4' A:DA5 3.9 0.0 1.0 C4' A:DG4 4.0 0.0 1.0 H3' A:DA5 4.1 0.0 1.0 H4' A:DG4 4.1 0.0 1.0 N2 B:DG21 4.2 0.0 1.0 H5'' A:DG4 4.2 0.0 1.0 C2' A:DA5 4.3 0.0 1.0 O4' A:DA5 4.3 0.0 1.0 N3 B:DG21 4.3 0.0 1.0 C3' A:DA5 4.4 0.0 1.0 C8 A:DA5 4.4 0.0 1.0 H1' B:DG21 4.4 0.0 1.0 C5' A:DG4 4.6 0.0 1.0 C1' A:DA5 4.7 0.0 1.0 C2 B:DG21 4.7 0.0 1.0 H4' A:DA5 4.8 0.0 1.0 C1' A:DG4 4.8 0.0 1.0 H21 B:DG21 4.8 0.0 1.0 O5' A:DG4 4.9 0.0 1.0 H2'' B:DG21 4.9 0.0 1.0 N9 A:DA5 5.0 0.0 1.0 O4' A:DG4 5.0 0.0 1.0

Phosphorus binding site 5 out of 22 in the The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 5 of The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs within 5.0Å range: probe atom residue distance (Å) B Occ A:P6 b:0.0 occ:1.00 P A:DA6 0.0 0.0 1.0 OP2 A:DA6 1.5 0.0 1.0 OP1 A:DA6 1.5 0.0 1.0 O5' A:DA6 1.6 0.0 1.0 O3' A:DA5 1.6 0.0 1.0 C5' A:DA6 2.6 0.0 1.0 C3' A:DA5 2.7 0.0 1.0 H5' A:DA6 2.8 0.0 1.0 H2'' A:DA5 2.9 0.0 1.0 H3' A:DA5 2.9 0.0 1.0 H5'' A:DA6 3.0 0.0 1.0 C2' A:DA5 3.3 0.0 1.0 H1' A:DA5 3.6 0.0 1.0 C4' A:DA6 4.0 0.0 1.0 C4' A:DA5 4.0 0.0 1.0 C1' A:DA5 4.0 0.0 1.0 H4' A:DA5 4.1 0.0 1.0 H2' A:DA5 4.1 0.0 1.0 H3' A:DA6 4.2 0.0 1.0 O4' A:DA6 4.2 0.0 1.0 H2' A:DA6 4.3 0.0 1.0 H8 A:DA6 4.4 0.0 1.0 O4' A:DA5 4.6 0.0 1.0 C3' A:DA6 4.6 0.0 1.0 H4' A:DA6 4.8 0.0 1.0 C2' A:DA6 4.9 0.0 1.0

Phosphorus binding site 6 out of 22 in the The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 6 of The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs within 5.0Å range: probe atom residue distance (Å) B Occ A:P7 b:0.0 occ:1.00 P A:DT7 0.0 0.0 1.0 OP2 A:DT7 1.5 0.0 1.0 OP1 A:DT7 1.5 0.0 1.0 O5' A:DT7 1.6 0.0 1.0 O3' A:DA6 1.6 0.0 1.0 C5' A:DT7 2.6 0.0 1.0 C3' A:DA6 2.7 0.0 1.0 H5' A:DT7 2.8 0.0 1.0 H3' A:DA6 2.9 0.0 1.0 H2'' A:DA6 2.9 0.0 1.0 H5'' A:DT7 3.0 0.0 1.0 C2' A:DA6 3.3 0.0 1.0 C4' A:DT7 4.0 0.0 1.0 H1' A:DA6 4.0 0.0 1.0 C4' A:DA6 4.0 0.0 1.0 H4' A:DA6 4.0 0.0 1.0 H6 A:DT7 4.0 0.0 1.0 H2' A:DA6 4.1 0.0 1.0 H2' A:DT7 4.2 0.0 1.0 O4' A:DT7 4.2 0.0 1.0 C1' A:DA6 4.2 0.0 1.0 H3' A:DT7 4.4 0.0 1.0 C3' A:DT7 4.6 0.0 1.0 H4' A:DT7 4.7 0.0 1.0 O4' A:DA6 4.8 0.0 1.0 C2' A:DT7 4.9 0.0 1.0 H5'' A:DA6 4.9 0.0 1.0 C6 A:DT7 5.0 0.0 1.0

Phosphorus binding site 7 out of 22 in the The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 7 of The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs within 5.0Å range: probe atom residue distance (Å) B Occ A:P8 b:0.0 occ:1.00 P A:DG8 0.0 0.0 1.0 OP1 A:DG8 1.5 0.0 1.0 OP2 A:DG8 1.5 0.0 1.0 O5' A:DG8 1.6 0.0 1.0 O3' A:DT7 1.6 0.0 1.0 C5' A:DG8 2.6 0.0 1.0 C3' A:DT7 2.7 0.0 1.0 H5' A:DG8 2.9 0.0 1.0 H3' A:DT7 2.9 0.0 1.0 H5'' A:DG8 2.9 0.0 1.0 H2'' A:DT7 2.9 0.0 1.0 C2' A:DT7 3.3 0.0 1.0 H1' A:DT7 3.7 0.0 1.0 H2' A:DG8 3.9 0.0 1.0 C4' A:DT7 4.0 0.0 1.0 C4' A:DG8 4.0 0.0 1.0 H4' A:DT7 4.0 0.0 1.0 H3' A:DG8 4.1 0.0 1.0 C1' A:DT7 4.1 0.0 1.0 H2' A:DT7 4.1 0.0 1.0 O4' A:DG8 4.3 0.0 1.0 C3' A:DG8 4.5 0.0 1.0 H8 A:DG8 4.6 0.0 1.0 C2' A:DG8 4.6 0.0 1.0 O4' A:DT7 4.7 0.0 1.0 H4' A:DG8 4.8 0.0 1.0 H5'' A:DT7 4.9 0.0 1.0

Phosphorus binding site 8 out of 22 in the The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 8 of The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs within 5.0Å range: probe atom residue distance (Å) B Occ A:P9 b:0.0 occ:1.00 P A:DG9 0.0 0.0 1.0 OP1 A:DG9 1.5 0.0 1.0 OP2 A:DG9 1.5 0.0 1.0 O5' A:DG9 1.6 0.0 1.0 O3' A:DG8 1.6 0.0 1.0 C5' A:DG9 2.6 0.0 1.0 C3' A:DG8 2.7 0.0 1.0 H5' A:DG9 2.8 0.0 1.0 H3' A:DG8 2.8 0.0 1.0 H5'' A:DG9 3.0 0.0 1.0 H2'' A:DG8 3.1 0.0 1.0 H8 A:DG9 3.4 0.0 1.0 C2' A:DG8 3.4 0.0 1.0 H1' A:DG8 3.8 0.0 1.0 H3' A:DG9 3.9 0.0 1.0 C4' A:DG9 3.9 0.0 1.0 C4' A:DG8 3.9 0.0 1.0 H4' A:DG8 3.9 0.0 1.0 C1' A:DG8 4.2 0.0 1.0 H2' A:DG8 4.2 0.0 1.0 O4' A:DG9 4.3 0.0 1.0 C8 A:DG9 4.4 0.0 1.0 C3' A:DG9 4.5 0.0 1.0 O4' A:DG8 4.7 0.0 1.0 H4' A:DG9 4.8 0.0 1.0 H5'' A:DG8 4.9 0.0 1.0 H21 B:DG16 4.9 0.0 1.0

Phosphorus binding site 9 out of 22 in the The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 9 of The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs within 5.0Å range: probe atom residue distance (Å) B Occ A:P10 b:0.0 occ:1.00 P A:DA10 0.0 0.0 1.0 OP1 A:DA10 1.5 0.0 1.0 OP2 A:DA10 1.5 0.0 1.0 O5' A:DA10 1.6 0.0 1.0 O3' A:DG9 1.6 0.0 1.0 C5' A:DA10 2.6 0.0 1.0 C3' A:DG9 2.7 0.0 1.0 H5'' A:DA10 2.8 0.0 1.0 H3' A:DG9 2.9 0.0 1.0 H5' A:DA10 3.0 0.0 1.0 H22 B:DG16 3.2 0.0 1.0 C2' A:DG9 3.4 0.0 1.0 H2' A:DG9 3.4 0.0 1.0 H8 A:DA10 3.4 0.0 1.0 H2'' A:DG9 3.4 0.0 1.0 H2' A:DA10 3.5 0.0 1.0 C4' A:DA10 3.9 0.0 1.0 C4' A:DG9 4.0 0.0 1.0 H4' A:DG9 4.1 0.0 1.0 N2 B:DG16 4.2 0.0 1.0 H3' A:DA10 4.2 0.0 1.0 H5'' A:DG9 4.2 0.0 1.0 O4' A:DA10 4.3 0.0 1.0 C8 A:DA10 4.3 0.0 1.0 C2' A:DA10 4.4 0.0 1.0 N3 B:DG16 4.4 0.0 1.0 C3' A:DA10 4.4 0.0 1.0 H1' B:DG16 4.5 0.0 1.0 C5' A:DG9 4.6 0.0 1.0 H4' A:DA10 4.8 0.0 1.0 C1' A:DA10 4.8 0.0 1.0 C2 B:DG16 4.8 0.0 1.0 C1' A:DG9 4.8 0.0 1.0 H21 B:DG16 4.8 0.0 1.0 O5' A:DG9 4.9 0.0 1.0 N9 A:DA10 4.9 0.0 1.0 H2'' B:DG16 5.0 0.0 1.0 O4' A:DG9 5.0 0.0 1.0

Phosphorus binding site 10 out of 22 in the The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs


Mono view


Stereo pair view

A full contact list of Phosphorus with other atoms in the P binding site number 10 of The Unusual Structure of the Human Centromere (Gga)2 Motif: Unpaired Guanosine Residues Stacked Between Sheared G(Dot) A Pairs within 5.0Å range: probe atom residue distance (Å) B Occ A:P11 b:0.0 occ:1.00 P A:DA11 0.0 0.0 1.0 OP1 A:DA11 1.5 0.0 1.0 OP2 A:DA11 1.5 0.0 1.0 O5' A:DA11 1.6 0.0 1.0 O3' A:DA10 1.6 0.0 1.0 C5' A:DA11 2.6 0.0 1.0 C3' A:DA10 2.7 0.0 1.0 H5' A:DA11 2.8 0.0 1.0 H2'' A:DA10 2.9 0.0 1.0 H3' A:DA10 2.9 0.0 1.0 H5'' A:DA11 3.0 0.0 1.0 C2' A:DA10 3.3 0.0 1.0 H1' A:DA10 3.6 0.0 1.0 C4' A:DA11 3.9 0.0 1.0 C4' A:DA10 4.0 0.0 1.0 C1' A:DA10 4.0 0.0 1.0 H4' A:DA10 4.0 0.0 1.0 H3' A:DA11 4.1 0.0 1.0 H2' A:DA10 4.1 0.0 1.0 H2' A:DA11 4.2 0.0 1.0 O4' A:DA11 4.3 0.0 1.0 H8 A:DA11 4.5 0.0 1.0 C3' A:DA11 4.5 0.0 1.0 O4' A:DA10 4.5 0.0 1.0 H4' A:DA11 4.8 0.0 1.0 C2' A:DA11 4.9 0.0 1.0

S.H.Chou, L.Zhu, B.R.Reid. The Unusual Structure of the Human Centromere (Gga)2 Motif. Unpaired Guanosine Residues Stacked Between Sheared G.A Pairs. J.Mol.Biol. V. 244 259 1994.
ISSN: ISSN 0022-2836
PubMed: 7966337
DOI: 10.1006/JMBI.1994.1727